Gcaud2340.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2340.t1
Unique Name	Gcaud2340.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:16299..17099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2340	Gcaud2340	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 16299..17099 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2340.t1.start1	Gcaud2340.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 16299..16301 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2340.t1.CDS1	Gcaud2340.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 16299..17099 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2340.t1.exon1	Gcaud2340.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 16299..17099 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2340.t1.stop1	Gcaud2340.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 17097..17099 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2340.t1	Gcaud2340.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 16299..17099 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+

mRNA sequence

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MASATPQAPDQLPPAPRFWGPFRPLFGGHTLFEAATSSFIPTFVVFLWRF
LFACFLVIVLVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLIQK
QHQPEPSRLAFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQLAQN
TLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVY
DFLDYRSQSNGITVAYYVGGLAWALVASFIVFLFSRLNRLPCVKVRSTYS
KEGSPASHRNRYFAFV*

spliced messenger RNA

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTGCTACGCCTCAAGCGCCCGATCAGTTACCGCCGGCACCGCG
CTTTTGGGGTCCGTTTCGACCGCTGTTTGGCGGTCACACGCTGTTTGAGG
CGGCCACATCGAGCTTTATACCCACGTTTGTGGTGTTTTTGTGGCGGTTT
TTGTTTGCGTGCTTCCTGGTAATCGTGTTGGTGTACTATGCGGTGATGGA
TGTTTACCGCTTCGAGTCTTACGCTGTTTGGGCACACATTGGATTGGCAC
TTTCATTCTTCTTGCTTTCAATGTGTTCGTTCTTGTTTCTAATACAGAAG
CAGCACCAGCCGGAGCCATCTCGACTGGCGTTTTGTACCATTCTACTGTA
CCAGATTTTCGCCACAGCGGCGGTGTTTTTCGACCTAGTGTTCTGGGTGT
TTCTGTTCGATTACTCGCAAAGTCCCGAATTCTCACAGCTTGCGCAGAAT
ACATTGAATGTGGGCTTGGTGGTGTTCGACCTTGTTCTTTCATTGCGCAT
TCAGTTTAAACTTGTGTACAGCGTGACGTTTGTGGCGTTCACACTGATAT
ACGTCATCTTTGTGTGGGCCCGCTTTGCCGTCACAGATACGTTCGTGTAC
GATTTTCTCGATTACCGAAGCCAATCGAACGGTATCACTGTAGCGTACTA
TGTCGGGGGCTTGGCGTGGGCTTTGGTGGCGTCGTTCATCGTGTTTCTGT
TTTCTCGTTTGAATAGACTGCCTTGCGTGAAGGTTCGGTCTACATATTCC
AAGGAAGGGTCACCTGCTTCACACCGCAATCGCTATTTCGCATTCGTGTA
G

protein sequence of Gcaud2340.t1

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MASATPQAPDQLPPAPRFWGPFRPLFGGHTLFEAATSSFIPTFVVFLWRF
LFACFLVIVLVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLIQK
QHQPEPSRLAFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQLAQN
TLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVY
DFLDYRSQSNGITVAYYVGGLAWALVASFIVFLFSRLNRLPCVKVRSTYS
KEGSPASHRNRYFAFV*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTGCTACGCCTCAAGCGCCCGATCAGTTACCGCCGGCACCGCG
CTTTTGGGGTCCGTTTCGACCGCTGTTTGGCGGTCACACGCTGTTTGAGG
CGGCCACATCGAGCTTTATACCCACGTTTGTGGTGTTTTTGTGGCGGTTT
TTGTTTGCGTGCTTCCTGGTAATCGTGTTGGTGTACTATGCGGTGATGGA
TGTTTACCGCTTCGAGTCTTACGCTGTTTGGGCACACATTGGATTGGCAC
TTTCATTCTTCTTGCTTTCAATGTGTTCGTTCTTGTTTCTAATACAGAAG
CAGCACCAGCCGGAGCCATCTCGACTGGCGTTTTGTACCATTCTACTGTA
CCAGATTTTCGCCACAGCGGCGGTGTTTTTCGACCTAGTGTTCTGGGTGT
TTCTGTTCGATTACTCGCAAAGTCCCGAATTCTCACAGCTTGCGCAGAAT
ACATTGAATGTGGGCTTGGTGGTGTTCGACCTTGTTCTTTCATTGCGCAT
TCAGTTTAAACTTGTGTACAGCGTGACGTTTGTGGCGTTCACACTGATAT
ACGTCATCTTTGTGTGGGCCCGCTTTGCCGTCACAGATACGTTCGTGTAC
GATTTTCTCGATTACCGAAGCCAATCGAACGGTATCACTGTAGCGTACTA
TGTCGGGGGCTTGGCGTGGGCTTTGGTGGCGTCGTTCATCGTGTTTCTGT
TTTCTCGTTTGAATAGACTGCCTTGCGTGAAGGTTCGGTCTACATATTCC
AAGGAAGGGTCACCTGCTTCACACCGCAATCGCTATTTCGCATTCGTGTA
G

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:16299..17099+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTGCTACGCCTCAAGCGCCCGATCAGTTACCGCCGGCACCGCG
CTTTTGGGGTCCGTTTCGACCGCTGTTTGGCGGTCACACGCTGTTTGAGG
CGGCCACATCGAGCTTTATACCCACGTTTGTGGTGTTTTTGTGGCGGTTT
TTGTTTGCGTGCTTCCTGGTAATCGTGTTGGTGTACTATGCGGTGATGGA
TGTTTACCGCTTCGAGTCTTACGCTGTTTGGGCACACATTGGATTGGCAC
TTTCATTCTTCTTGCTTTCAATGTGTTCGTTCTTGTTTCTAATACAGAAG
CAGCACCAGCCGGAGCCATCTCGACTGGCGTTTTGTACCATTCTACTGTA
CCAGATTTTCGCCACAGCGGCGGTGTTTTTCGACCTAGTGTTCTGGGTGT
TTCTGTTCGATTACTCGCAAAGTCCCGAATTCTCACAGCTTGCGCAGAAT
ACATTGAATGTGGGCTTGGTGGTGTTCGACCTTGTTCTTTCATTGCGCAT
TCAGTTTAAACTTGTGTACAGCGTGACGTTTGTGGCGTTCACACTGATAT
ACGTCATCTTTGTGTGGGCCCGCTTTGCCGTCACAGATACGTTCGTGTAC
GATTTTCTCGATTACCGAAGCCAATCGAACGGTATCACTGTAGCGTACTA
TGTCGGGGGCTTGGCGTGGGCTTTGGTGGCGTCGTTCATCGTGTTTCTGT
TTTCTCGTTTGAATAGACTGCCTTGCGTGAAGGTTCGGTCTACATATTCC
AAGGAAGGGTCACCTGCTTCACACCGCAATCGCTATTTCGCATTCGTGTA
G