Gcaud2357.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2357.t1
Unique Name	Gcaud2357.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:54836..55486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.1383s0003.1.p
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K22378
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031224,GO:0031225,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	1.74e-07
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,37X5F@33090\|Viridiplantae,3GM4C@35493\|Streptophyta,3I15A@3699\|Brassicales
EC	2.3.2.27
Description	Anaphase-promoting complex subunit 11 RING-H2 finger
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2357	Gcaud2357	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 54836..55486 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2357.t1.start1	Gcaud2357.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 54836..54838 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2357.t1.CDS1	Gcaud2357.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 54836..55486 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2357.t1.exon1	Gcaud2357.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 54836..55486 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2357.t1.stop1	Gcaud2357.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 55484..55486 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2357.t1	Gcaud2357.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 54836..55486 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+

mRNA sequence

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=217bp
MQLSPPLVIQSTSIRQDNDRSSPQTEPDTVRPRFYILAFCVAAVLFALFN
IFRRRRLFSRSRSARVSRLFQHSRVHRPPPPVYRPYSTAHPRTTIFVPVV
NHFRDRAAADQFNADFAEAFRSSFSHDLQLTHAAEPPKEVYLRSFQAKDE
DKHFPCPICLDALETEPVSAGRCNHMMHTSCLRGWLAKDVNAACPICRAP
YDDFSSAPTYSSRIVL*

spliced messenger RNA

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACTTTCACCACCACTTGTAATTCAGTCTACCTCAATCAGACAAGA
CAATGACCGGTCTTCACCGCAAACAGAACCAGACACCGTGCGCCCCAGGT
TTTACATTTTAGCCTTTTGCGTGGCGGCTGTACTTTTCGCTTTGTTTAAT
ATATTCCGTCGTCGACGTTTGTTCAGTCGCAGCCGTTCTGCAAGGGTTTC
CCGTCTGTTTCAGCATTCCCGTGTTCACCGTCCACCTCCTCCAGTTTACC
GACCTTACTCTACCGCCCATCCGCGAACTACAATATTTGTACCAGTCGTC
AATCATTTTCGTGATAGAGCTGCTGCGGATCAATTCAATGCCGATTTCGC
AGAGGCCTTTCGATCCTCGTTTTCTCATGATCTTCAACTCACACACGCTG
CAGAGCCGCCCAAGGAAGTATATCTCCGAAGTTTTCAGGCTAAGGATGAG
GACAAGCATTTTCCATGCCCCATTTGCCTAGATGCGCTGGAAACAGAACC
AGTCAGTGCCGGTCGCTGTAATCATATGATGCATACCTCATGTCTCAGAG
GCTGGCTGGCAAAGGATGTCAATGCCGCCTGTCCCATCTGTCGCGCCCCG
TATGATGACTTTTCGTCGGCTCCAACGTATTCGTCTCGAATTGTACTATG
A

protein sequence of Gcaud2357.t1

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=217bp
MQLSPPLVIQSTSIRQDNDRSSPQTEPDTVRPRFYILAFCVAAVLFALFN
IFRRRRLFSRSRSARVSRLFQHSRVHRPPPPVYRPYSTAHPRTTIFVPVV
NHFRDRAAADQFNADFAEAFRSSFSHDLQLTHAAEPPKEVYLRSFQAKDE
DKHFPCPICLDALETEPVSAGRCNHMMHTSCLRGWLAKDVNAACPICRAP
YDDFSSAPTYSSRIVL*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+ (Gracilaria caudata M_176_S67 male)
ATGCAACTTTCACCACCACTTGTAATTCAGTCTACCTCAATCAGACAAGA
CAATGACCGGTCTTCACCGCAAACAGAACCAGACACCGTGCGCCCCAGGT
TTTACATTTTAGCCTTTTGCGTGGCGGCTGTACTTTTCGCTTTGTTTAAT
ATATTCCGTCGTCGACGTTTGTTCAGTCGCAGCCGTTCTGCAAGGGTTTC
CCGTCTGTTTCAGCATTCCCGTGTTCACCGTCCACCTCCTCCAGTTTACC
GACCTTACTCTACCGCCCATCCGCGAACTACAATATTTGTACCAGTCGTC
AATCATTTTCGTGATAGAGCTGCTGCGGATCAATTCAATGCCGATTTCGC
AGAGGCCTTTCGATCCTCGTTTTCTCATGATCTTCAACTCACACACGCTG
CAGAGCCGCCCAAGGAAGTATATCTCCGAAGTTTTCAGGCTAAGGATGAG
GACAAGCATTTTCCATGCCCCATTTGCCTAGATGCGCTGGAAACAGAACC
AGTCAGTGCCGGTCGCTGTAATCATATGATGCATACCTCATGTCTCAGAG
GCTGGCTGGCAAAGGATGTCAATGCCGCCTGTCCCATCTGTCGCGCCCCG
TATGATGACTTTTCGTCGGCTCCAACGTATTCGTCTCGAATTGTACTATG
A

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+

>Gcaud2357.t1 ID=Gcaud2357.t1|Name=Gcaud2357.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=651bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:54836..55486+ (Gracilaria caudata M_176_S67 male)
ATGCAACTTTCACCACCACTTGTAATTCAGTCTACCTCAATCAGACAAGA
CAATGACCGGTCTTCACCGCAAACAGAACCAGACACCGTGCGCCCCAGGT
TTTACATTTTAGCCTTTTGCGTGGCGGCTGTACTTTTCGCTTTGTTTAAT
ATATTCCGTCGTCGACGTTTGTTCAGTCGCAGCCGTTCTGCAAGGGTTTC
CCGTCTGTTTCAGCATTCCCGTGTTCACCGTCCACCTCCTCCAGTTTACC
GACCTTACTCTACCGCCCATCCGCGAACTACAATATTTGTACCAGTCGTC
AATCATTTTCGTGATAGAGCTGCTGCGGATCAATTCAATGCCGATTTCGC
AGAGGCCTTTCGATCCTCGTTTTCTCATGATCTTCAACTCACACACGCTG
CAGAGCCGCCCAAGGAAGTATATCTCCGAAGTTTTCAGGCTAAGGATGAG
GACAAGCATTTTCCATGCCCCATTTGCCTAGATGCGCTGGAAACAGAACC
AGTCAGTGCCGGTCGCTGTAATCATATGATGCATACCTCATGTCTCAGAG
GCTGGCTGGCAAAGGATGTCAATGCCGCCTGTCCCATCTGTCGCGCCCCG
TATGATGACTTTTCGTCGGCTCCAACGTATTCGTCTCGAATTGTACTATG
A