Gcaud2347.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2347.t1
Unique Name	Gcaud2347.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	524

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:32199..33770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010688431.1
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14791
GOs	GO:0001932,GO:0001933,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0006325,GO:0006355,GO:0006356,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0012505,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0033135,GO:0033137,GO:0033139,GO:0033140,GO:0034770,GO:0034773,GO:0034968,GO:0035064,GO:0036211,GO:0042325,GO:0042326,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045936,GO:0045943,GO:0046425,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:1901564,GO:1901836,GO:1901838,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1904892,GO:1990889,GO:2000112,GO:2000736,GO:2000738,GO:2001141
Evalue	5.79e-51
EggNOG OGs	KOG0270@1\|root,KOG0270@2759\|Eukaryota,37HSM@33090\|Viridiplantae,3GET6@35493\|Streptophyta
Description	Periodic tryptophan protein 1 homolog
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2347	Gcaud2347	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 32199..33770 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2347.t1.start1	Gcaud2347.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 32199..32201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2347.t1.CDS1	Gcaud2347.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 32199..33770 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2347.t1.exon1	Gcaud2347.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 32199..33770 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2347.t1.stop1	Gcaud2347.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 33768..33770 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2347.t1	Gcaud2347.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 32199..33770 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+

mRNA sequence

>Gcaud2347.t1 ID=Gcaud2347.t1|Name=Gcaud2347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=524bp
MLVDLTWVPRGVAKTKLPQGVDRDIDMESSEAANKNTNMMESDNEPEVDM
AEVLANDLDNLSFYKKGEKDPHLSSDPKANDLFDEEELEDIVIRSTDSLI
ISAHSGEDVSLLMTHVFDDNPDESDDDEESAYEPHTYIHHDLVLPTLPLC
AAHTSLEVKEEIVNLVAVGMFTPGIEIWDVDQVNNLEPVVSLGGYGPSSV
VKDALAAASKVQLTGKKKRRKKPKLKLREGSHQDAVMSLSWNAIQREYLA
SGSADQTVKIWDIESAHCASTFSHHTDKVQAVAFHPSEAELLLTGSFDRT
IQILDVRDTGKRRQWSVSTDVETCSWGYGPTMNLVLATTEDGYVSAFDTR
ISGDTSSYLCRWLAHKSAVSASVVSRDVPGMMVTGSVDKQIKVWDISQMS
SNTEAQLVYERPSRVGAVFALSLCPVPQPGTNASPFVLAFGGSKGSMAVT
DLAVESEAVRERFLPHCGIEAAGVIRKRSGRGIHVDRTPRSHQVKAVGSV
GPGKGGSDRETSSESSGSDDDQT*

spliced messenger RNA

>Gcaud2347.t1 ID=Gcaud2347.t1|Name=Gcaud2347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCGATTTGACATGGGTTCCCCGCGGCGTAGCTAAAACCAAGCT
GCCGCAAGGGGTGGACCGAGATATTGACATGGAATCTTCAGAAGCTGCGA
ATAAGAACACAAATATGATGGAAAGCGATAACGAACCAGAAGTAGATATG
GCTGAAGTGCTGGCTAATGATCTGGACAATCTTTCGTTTTATAAAAAGGG
AGAAAAAGACCCACATCTTTCATCTGATCCCAAAGCAAATGACCTTTTCG
ACGAAGAAGAACTCGAGGACATAGTGATTCGATCAACAGACTCACTCATA
ATTTCTGCTCATTCAGGAGAAGATGTTTCCCTTCTGATGACTCATGTCTT
CGATGATAATCCGGATGAATCTGATGATGATGAAGAAAGCGCCTATGAGC
CACACACATATATTCACCACGATCTCGTTCTTCCCACCCTACCGCTTTGT
GCGGCCCATACAAGTCTTGAAGTGAAAGAAGAAATTGTAAATCTTGTAGC
GGTTGGCATGTTCACTCCAGGAATAGAAATATGGGACGTTGATCAAGTCA
ACAACCTGGAGCCCGTGGTCTCTCTTGGTGGATATGGGCCAAGTTCTGTT
GTCAAAGACGCGCTCGCAGCAGCAAGCAAGGTACAGCTAACTGGGAAGAA
AAAGAGAAGAAAGAAACCGAAGCTCAAGCTTCGAGAAGGCTCGCACCAGG
ACGCTGTCATGAGTCTCTCGTGGAATGCTATCCAAAGGGAGTATCTTGCA
AGTGGCTCCGCTGATCAAACGGTCAAAATCTGGGATATTGAATCTGCTCA
CTGTGCGTCTACATTTTCACATCACACTGACAAAGTGCAGGCAGTGGCGT
TTCATCCATCAGAAGCGGAACTACTTCTAACAGGATCCTTTGACAGGACC
ATTCAAATACTCGACGTTCGAGATACAGGGAAAAGAAGACAATGGTCTGT
AAGCACTGACGTTGAAACTTGCTCCTGGGGTTATGGGCCTACCATGAACT
TAGTTCTAGCCACAACCGAAGATGGTTATGTATCTGCGTTCGACACTAGA
ATTTCAGGAGACACGTCTTCATACCTATGTAGATGGCTGGCACATAAGAG
CGCAGTATCCGCGAGCGTTGTTTCTAGGGATGTGCCTGGTATGATGGTAA
CTGGCAGTGTTGACAAACAGATTAAGGTGTGGGACATATCGCAAATGAGT
TCTAATACAGAAGCGCAGTTGGTTTACGAACGACCATCAAGGGTGGGCGC
CGTGTTTGCTTTATCTCTATGCCCTGTCCCTCAACCGGGAACAAATGCTT
CACCATTCGTACTAGCTTTCGGAGGCTCAAAAGGTTCCATGGCTGTGACA
GATCTGGCCGTAGAGAGCGAAGCTGTGAGAGAAAGATTTCTTCCCCATTG
CGGAATAGAAGCAGCAGGCGTAATCAGAAAACGAAGCGGTCGAGGAATTC
ATGTCGATCGTACTCCTCGATCTCATCAAGTCAAAGCGGTTGGCTCCGTT
GGGCCTGGAAAAGGCGGAAGCGATCGTGAAACTTCATCAGAAAGCTCTGG
TTCAGATGATGATCAAACTTGA

protein sequence of Gcaud2347.t1

>Gcaud2347.t1 ID=Gcaud2347.t1|Name=Gcaud2347.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=524bp
MLVDLTWVPRGVAKTKLPQGVDRDIDMESSEAANKNTNMMESDNEPEVDM
AEVLANDLDNLSFYKKGEKDPHLSSDPKANDLFDEEELEDIVIRSTDSLI
ISAHSGEDVSLLMTHVFDDNPDESDDDEESAYEPHTYIHHDLVLPTLPLC
AAHTSLEVKEEIVNLVAVGMFTPGIEIWDVDQVNNLEPVVSLGGYGPSSV
VKDALAAASKVQLTGKKKRRKKPKLKLREGSHQDAVMSLSWNAIQREYLA
SGSADQTVKIWDIESAHCASTFSHHTDKVQAVAFHPSEAELLLTGSFDRT
IQILDVRDTGKRRQWSVSTDVETCSWGYGPTMNLVLATTEDGYVSAFDTR
ISGDTSSYLCRWLAHKSAVSASVVSRDVPGMMVTGSVDKQIKVWDISQMS
SNTEAQLVYERPSRVGAVFALSLCPVPQPGTNASPFVLAFGGSKGSMAVT
DLAVESEAVRERFLPHCGIEAAGVIRKRSGRGIHVDRTPRSHQVKAVGSV
GPGKGGSDRETSSESSGSDDDQT*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2347.t1 ID=Gcaud2347.t1|Name=Gcaud2347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+ (Gracilaria caudata M_176_S67 male)
ATGCTTGTCGATTTGACATGGGTTCCCCGCGGCGTAGCTAAAACCAAGCT
GCCGCAAGGGGTGGACCGAGATATTGACATGGAATCTTCAGAAGCTGCGA
ATAAGAACACAAATATGATGGAAAGCGATAACGAACCAGAAGTAGATATG
GCTGAAGTGCTGGCTAATGATCTGGACAATCTTTCGTTTTATAAAAAGGG
AGAAAAAGACCCACATCTTTCATCTGATCCCAAAGCAAATGACCTTTTCG
ACGAAGAAGAACTCGAGGACATAGTGATTCGATCAACAGACTCACTCATA
ATTTCTGCTCATTCAGGAGAAGATGTTTCCCTTCTGATGACTCATGTCTT
CGATGATAATCCGGATGAATCTGATGATGATGAAGAAAGCGCCTATGAGC
CACACACATATATTCACCACGATCTCGTTCTTCCCACCCTACCGCTTTGT
GCGGCCCATACAAGTCTTGAAGTGAAAGAAGAAATTGTAAATCTTGTAGC
GGTTGGCATGTTCACTCCAGGAATAGAAATATGGGACGTTGATCAAGTCA
ACAACCTGGAGCCCGTGGTCTCTCTTGGTGGATATGGGCCAAGTTCTGTT
GTCAAAGACGCGCTCGCAGCAGCAAGCAAGGTACAGCTAACTGGGAAGAA
AAAGAGAAGAAAGAAACCGAAGCTCAAGCTTCGAGAAGGCTCGCACCAGG
ACGCTGTCATGAGTCTCTCGTGGAATGCTATCCAAAGGGAGTATCTTGCA
AGTGGCTCCGCTGATCAAACGGTCAAAATCTGGGATATTGAATCTGCTCA
CTGTGCGTCTACATTTTCACATCACACTGACAAAGTGCAGGCAGTGGCGT
TTCATCCATCAGAAGCGGAACTACTTCTAACAGGATCCTTTGACAGGACC
ATTCAAATACTCGACGTTCGAGATACAGGGAAAAGAAGACAATGGTCTGT
AAGCACTGACGTTGAAACTTGCTCCTGGGGTTATGGGCCTACCATGAACT
TAGTTCTAGCCACAACCGAAGATGGTTATGTATCTGCGTTCGACACTAGA
ATTTCAGGAGACACGTCTTCATACCTATGTAGATGGCTGGCACATAAGAG
CGCAGTATCCGCGAGCGTTGTTTCTAGGGATGTGCCTGGTATGATGGTAA
CTGGCAGTGTTGACAAACAGATTAAGGTGTGGGACATATCGCAAATGAGT
TCTAATACAGAAGCGCAGTTGGTTTACGAACGACCATCAAGGGTGGGCGC
CGTGTTTGCTTTATCTCTATGCCCTGTCCCTCAACCGGGAACAAATGCTT
CACCATTCGTACTAGCTTTCGGAGGCTCAAAAGGTTCCATGGCTGTGACA
GATCTGGCCGTAGAGAGCGAAGCTGTGAGAGAAAGATTTCTTCCCCATTG
CGGAATAGAAGCAGCAGGCGTAATCAGAAAACGAAGCGGTCGAGGAATTC
ATGTCGATCGTACTCCTCGATCTCATCAAGTCAAAGCGGTTGGCTCCGTT
GGGCCTGGAAAAGGCGGAAGCGATCGTGAAACTTCATCAGAAAGCTCTGG
TTCAGATGATGATCAAACTTGA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+

>Gcaud2347.t1 ID=Gcaud2347.t1|Name=Gcaud2347.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1572bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:32199..33770+ (Gracilaria caudata M_176_S67 male)
ATGCTTGTCGATTTGACATGGGTTCCCCGCGGCGTAGCTAAAACCAAGCT
GCCGCAAGGGGTGGACCGAGATATTGACATGGAATCTTCAGAAGCTGCGA
ATAAGAACACAAATATGATGGAAAGCGATAACGAACCAGAAGTAGATATG
GCTGAAGTGCTGGCTAATGATCTGGACAATCTTTCGTTTTATAAAAAGGG
AGAAAAAGACCCACATCTTTCATCTGATCCCAAAGCAAATGACCTTTTCG
ACGAAGAAGAACTCGAGGACATAGTGATTCGATCAACAGACTCACTCATA
ATTTCTGCTCATTCAGGAGAAGATGTTTCCCTTCTGATGACTCATGTCTT
CGATGATAATCCGGATGAATCTGATGATGATGAAGAAAGCGCCTATGAGC
CACACACATATATTCACCACGATCTCGTTCTTCCCACCCTACCGCTTTGT
GCGGCCCATACAAGTCTTGAAGTGAAAGAAGAAATTGTAAATCTTGTAGC
GGTTGGCATGTTCACTCCAGGAATAGAAATATGGGACGTTGATCAAGTCA
ACAACCTGGAGCCCGTGGTCTCTCTTGGTGGATATGGGCCAAGTTCTGTT
GTCAAAGACGCGCTCGCAGCAGCAAGCAAGGTACAGCTAACTGGGAAGAA
AAAGAGAAGAAAGAAACCGAAGCTCAAGCTTCGAGAAGGCTCGCACCAGG
ACGCTGTCATGAGTCTCTCGTGGAATGCTATCCAAAGGGAGTATCTTGCA
AGTGGCTCCGCTGATCAAACGGTCAAAATCTGGGATATTGAATCTGCTCA
CTGTGCGTCTACATTTTCACATCACACTGACAAAGTGCAGGCAGTGGCGT
TTCATCCATCAGAAGCGGAACTACTTCTAACAGGATCCTTTGACAGGACC
ATTCAAATACTCGACGTTCGAGATACAGGGAAAAGAAGACAATGGTCTGT
AAGCACTGACGTTGAAACTTGCTCCTGGGGTTATGGGCCTACCATGAACT
TAGTTCTAGCCACAACCGAAGATGGTTATGTATCTGCGTTCGACACTAGA
ATTTCAGGAGACACGTCTTCATACCTATGTAGATGGCTGGCACATAAGAG
CGCAGTATCCGCGAGCGTTGTTTCTAGGGATGTGCCTGGTATGATGGTAA
CTGGCAGTGTTGACAAACAGATTAAGGTGTGGGACATATCGCAAATGAGT
TCTAATACAGAAGCGCAGTTGGTTTACGAACGACCATCAAGGGTGGGCGC
CGTGTTTGCTTTATCTCTATGCCCTGTCCCTCAACCGGGAACAAATGCTT
CACCATTCGTACTAGCTTTCGGAGGCTCAAAAGGTTCCATGGCTGTGACA
GATCTGGCCGTAGAGAGCGAAGCTGTGAGAGAAAGATTTCTTCCCCATTG
CGGAATAGAAGCAGCAGGCGTAATCAGAAAACGAAGCGGTCGAGGAATTC
ATGTCGATCGTACTCCTCGATCTCATCAAGTCAAAGCGGTTGGCTCCGTT
GGGCCTGGAAAAGGCGGAAGCGATCGTGAAACTTCATCAGAAAGCTCTGG
TTCAGATGATGATCAAACTTGA