Gcaud2363.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2363.t1
Unique Name	Gcaud2363.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:64595..65482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9778.XP_004385219.1
Preferred name	SRM
PFAMs	Spermine_synt_N,Spermine_synth
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00021,RC00053
KEGG ko	ko:K00797
KEGG Reaction	R01920,R02869,R08359
KEGG Pathway	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100
KEGG Module	M00034,M00133
GOs	GO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010033,GO:0016740,GO:0016765,GO:0034097,GO:0034641,GO:0042221,GO:0042401,GO:0042802,GO:0042803,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0050896,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
Evalue	9.66e-131
EggNOG OGs	COG0421@1\|root,KOG1562@2759\|Eukaryota,39J87@33154\|Opisthokonta,3BCX8@33208\|Metazoa,3D093@33213\|Bilateria,4873X@7711\|Chordata,48XN6@7742\|Vertebrata,3JCNW@40674\|Mammalia,353JT@311790\|Afrotheria
EC	2.5.1.16
Description	Spermidine synthase
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2363	Gcaud2363	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 64595..65482 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2363.t1.stop1	Gcaud2363.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 64595..64597 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2363.t1.CDS1	Gcaud2363.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 64595..65482 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2363.t1.exon1	Gcaud2363.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 64595..65482 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2363.t1.start1	Gcaud2363.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 65480..65482 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2363.t1	Gcaud2363.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 64595..65482 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:64595..65482-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:64595..65482-

mRNA sequence

>Gcaud2363.t1 ID=Gcaud2363.t1|Name=Gcaud2363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=296bp
MEKNMECNSVQMIKDGWFMEKGPLWPGQAMSLEVEEVLEHCRSKHQDIMV
FKSKSYGNVLVLDGIIQCTERDEFAYQEMIAHIPLFSHPNPEKVLIVGGG
DGGVMREVLKHPSVKKVVICEIDEKVIEVSKKYLPSMSSSYSDERTEVLN
MDGLEFMKAKKEEFDVIITDSSDPIGPAETLFGMEYYEVMHQSLKPGGLL
CSQGECMWLHASLIQPLIWSCRRIYAVVEYAYTTIPTYPSGQIGFILCSK
NQSTRFRVPLRKPGEDVLSTLRYYNSEIHSAAFVLPSFARRAILS*

spliced messenger RNA

>Gcaud2363.t1 ID=Gcaud2363.t1|Name=Gcaud2363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:64595..65482- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGAACATGGAGTGCAACAGTGTTCAAATGATAAAAGACGGTTG
GTTCATGGAAAAGGGTCCTTTGTGGCCTGGCCAAGCTATGAGCCTTGAAG
TTGAAGAGGTTTTGGAGCATTGTAGATCGAAGCACCAGGACATCATGGTG
TTCAAGTCAAAATCCTACGGCAACGTTCTTGTTCTTGACGGAATAATTCA
ATGCACAGAGCGTGACGAATTTGCTTATCAGGAGATGATTGCCCATATTC
CCCTATTCTCACACCCCAATCCAGAGAAAGTTCTCATCGTCGGCGGAGGT
GACGGAGGTGTCATGAGAGAAGTACTGAAGCATCCCAGTGTGAAGAAGGT
TGTGATTTGCGAAATCGATGAGAAGGTTATCGAAGTCTCCAAGAAGTACC
TGCCAAGTATGTCTTCATCGTACTCAGATGAAAGAACCGAAGTGTTAAAC
ATGGACGGTTTGGAGTTCATGAAGGCCAAAAAAGAAGAATTCGACGTTAT
TATAACCGATTCATCAGATCCTATTGGCCCAGCTGAAACTCTATTTGGGA
TGGAGTATTACGAAGTTATGCATCAGAGTTTAAAGCCTGGCGGTTTGCTC
TGCTCTCAGGGTGAATGCATGTGGCTTCACGCTAGCCTCATTCAGCCGCT
CATTTGGTCATGCAGAAGAATATATGCTGTAGTAGAATACGCGTACACAA
CAATTCCAACATACCCGTCGGGACAAATTGGATTCATTTTGTGTTCAAAG
AATCAGAGCACACGGTTTCGCGTCCCTTTACGAAAACCAGGGGAAGATGT
GTTGTCAACATTGCGTTATTACAATAGTGAGATACATTCAGCAGCATTTG
TTCTTCCGAGCTTTGCAAGGAGAGCGATTCTTTCTTAG

protein sequence of Gcaud2363.t1

>Gcaud2363.t1 ID=Gcaud2363.t1|Name=Gcaud2363.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=296bp
MEKNMECNSVQMIKDGWFMEKGPLWPGQAMSLEVEEVLEHCRSKHQDIMV
FKSKSYGNVLVLDGIIQCTERDEFAYQEMIAHIPLFSHPNPEKVLIVGGG
DGGVMREVLKHPSVKKVVICEIDEKVIEVSKKYLPSMSSSYSDERTEVLN
MDGLEFMKAKKEEFDVIITDSSDPIGPAETLFGMEYYEVMHQSLKPGGLL
CSQGECMWLHASLIQPLIWSCRRIYAVVEYAYTTIPTYPSGQIGFILCSK
NQSTRFRVPLRKPGEDVLSTLRYYNSEIHSAAFVLPSFARRAILS*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:64595..65482-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2363.t1 ID=Gcaud2363.t1|Name=Gcaud2363.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=888bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:64595..65482- (Gracilaria caudata M_176_S67 male)
ATGGAAAAGAACATGGAGTGCAACAGTGTTCAAATGATAAAAGACGGTTG
GTTCATGGAAAAGGGTCCTTTGTGGCCTGGCCAAGCTATGAGCCTTGAAG
TTGAAGAGGTTTTGGAGCATTGTAGATCGAAGCACCAGGACATCATGGTG
TTCAAGTCAAAATCCTACGGCAACGTTCTTGTTCTTGACGGAATAATTCA
ATGCACAGAGCGTGACGAATTTGCTTATCAGGAGATGATTGCCCATATTC
CCCTATTCTCACACCCCAATCCAGAGAAAGTTCTCATCGTCGGCGGAGGT
GACGGAGGTGTCATGAGAGAAGTACTGAAGCATCCCAGTGTGAAGAAGGT
TGTGATTTGCGAAATCGATGAGAAGGTTATCGAAGTCTCCAAGAAGTACC
TGCCAAGTATGTCTTCATCGTACTCAGATGAAAGAACCGAAGTGTTAAAC
ATGGACGGTTTGGAGTTCATGAAGGCCAAAAAAGAAGAATTCGACGTTAT
TATAACCGATTCATCAGATCCTATTGGCCCAGCTGAAACTCTATTTGGGA
TGGAGTATTACGAAGTTATGCATCAGAGTTTAAAGCCTGGCGGTTTGCTC
TGCTCTCAGGGTGAATGCATGTGGCTTCACGCTAGCCTCATTCAGCCGCT
CATTTGGTCATGCAGAAGAATATATGCTGTAGTAGAATACGCGTACACAA
CAATTCCAACATACCCGTCGGGACAAATTGGATTCATTTTGTGTTCAAAG
AATCAGAGCACACGGTTTCGCGTCCCTTTACGAAAACCAGGGGAAGATGT
GTTGTCAACATTGCGTTATTACAATAGTGAGATACATTCAGCAGCATTTG
TTCTTCCGAGCTTTGCAAGGAGAGCGATTCTTTCTTAG

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:64595..65482-

>Gcaud2363.t1 ID=Gcaud2363.t1|Name=Gcaud2363.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=888bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:64595..65482- (Gracilaria caudata M_176_S67 male)
ATGGAAAAGAACATGGAGTGCAACAGTGTTCAAATGATAAAAGACGGTTG
GTTCATGGAAAAGGGTCCTTTGTGGCCTGGCCAAGCTATGAGCCTTGAAG
TTGAAGAGGTTTTGGAGCATTGTAGATCGAAGCACCAGGACATCATGGTG
TTCAAGTCAAAATCCTACGGCAACGTTCTTGTTCTTGACGGAATAATTCA
ATGCACAGAGCGTGACGAATTTGCTTATCAGGAGATGATTGCCCATATTC
CCCTATTCTCACACCCCAATCCAGAGAAAGTTCTCATCGTCGGCGGAGGT
GACGGAGGTGTCATGAGAGAAGTACTGAAGCATCCCAGTGTGAAGAAGGT
TGTGATTTGCGAAATCGATGAGAAGGTTATCGAAGTCTCCAAGAAGTACC
TGCCAAGTATGTCTTCATCGTACTCAGATGAAAGAACCGAAGTGTTAAAC
ATGGACGGTTTGGAGTTCATGAAGGCCAAAAAAGAAGAATTCGACGTTAT
TATAACCGATTCATCAGATCCTATTGGCCCAGCTGAAACTCTATTTGGGA
TGGAGTATTACGAAGTTATGCATCAGAGTTTAAAGCCTGGCGGTTTGCTC
TGCTCTCAGGGTGAATGCATGTGGCTTCACGCTAGCCTCATTCAGCCGCT
CATTTGGTCATGCAGAAGAATATATGCTGTAGTAGAATACGCGTACACAA
CAATTCCAACATACCCGTCGGGACAAATTGGATTCATTTTGTGTTCAAAG
AATCAGAGCACACGGTTTCGCGTCCCTTTACGAAAACCAGGGGAAGATGT
GTTGTCAACATTGCGTTATTACAATAGTGAGATACATTCAGCAGCATTTG
TTCTTCCGAGCTTTGCAAGGAGAGCGATTCTTTCTTAG