Gcaud10071.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10071.t1
Unique NameGcaud10071.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_489_length_23951_cov_4.549455contigNODE_489_length_23951_cov_4.549455:22704..23105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33169.AAS53269
Preferred namePUS1
PFAMsPseudoU_synth_1
Max annot lvl4751|Fungi
KEGG koko:K06173,ko:K15452
GOsGO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016073,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0031120,GO:0034470,GO:0034641,GO:0034660,GO:0040031,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0106032,GO:0140098,GO:1901360,GO:1901363,GO:1990481
Evalue1.77e-19
EggNOG OGsCOG0101@1|root,KOG2553@2759|Eukaryota,38F38@33154|Opisthokonta,3NVYM@4751|Fungi,3QNKA@4890|Ascomycota,3RSJ4@4891|Saccharomycetes,3RZTA@4893|Saccharomycetaceae
EC5.4.99.12,5.4.99.44
Descriptionto Saccharomyces cerevisiae PUS2 (YGL063W) and PUS1 (YPL212C)
COG categoryJ
BiGG ReactioniMM904.YGL063W,iND750.YGL063W
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10071Gcaud10071Gracilaria caudata M_176_S67 malegeneNODE_489_length_23951_cov_4.549455 22704..23105 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1.stop1Gcaud10071.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_489_length_23951_cov_4.549455 22704..22706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1.CDS1Gcaud10071.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 22704..23105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1.exon1Gcaud10071.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 22704..23105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1.start1Gcaud10071.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_489_length_23951_cov_4.549455 23103..23105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1Gcaud10071.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_489_length_23951_cov_4.549455 22704..23105 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=134bp
MPSRAQPVEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFR
PDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFK
QQFIFPSIASREIEEDAMGIYFRTVEAYPITFD*
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spliced messenger RNA

>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:22704..23105- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCGCGCGCGCAGCCTGTTGAATGGCTCACTGTTCACATCAAGGG
ACAGAGTTTCATGCTGCATCAAATACGAAAGATGCTTAGTTTAGCGCTAC
TCACCGCGTTACAAAGGGTTCCGCCAGACGCCATCAGTCGATCGTTTCGA
CCAGATACCTTTATCAACATCCCTCCAGCACCCGCCACAGGCCTGTTTCT
AAACTCTTGTTACTTTGATTGGTATAACCAACGGCACGCAGAGCGGTTGG
AACAACCTTTAGTGCTCGCCCCATTTGATCAGCAGCGCGAACTTTTCAAG
CAACAATTCATCTTTCCCTCTATTGCCAGCAGAGAAATCGAAGAAGATGC
CATGGGAATTTACTTTCGCACCGTTGAGGCATATCCCATAACTTTTGACT
AA
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protein sequence of Gcaud10071.t1

>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MPSRAQPVEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFR
PDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFK
QQFIFPSIASREIEEDAMGIYFRTVEAYPITFD*
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mRNA from alignment at NODE_489_length_23951_cov_4.549455:22704..23105-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:22704..23105- (Gracilaria caudata M_176_S67 male)
ATGCCTTCGCGCGCGCAGCCTGTTGAATGGCTCACTGTTCACATCAAGGG
ACAGAGTTTCATGCTGCATCAAATACGAAAGATGCTTAGTTTAGCGCTAC
TCACCGCGTTACAAAGGGTTCCGCCAGACGCCATCAGTCGATCGTTTCGA
CCAGATACCTTTATCAACATCCCTCCAGCACCCGCCACAGGCCTGTTTCT
AAACTCTTGTTACTTTGATTGGTATAACCAACGGCACGCAGAGCGGTTGG
AACAACCTTTAGTGCTCGCCCCATTTGATCAGCAGCGCGAACTTTTCAAG
CAACAATTCATCTTTCCCTCTATTGCCAGCAGAGAAATCGAAGAAGATGC
CATGGGAATTTACTTTCGCACCGTTGAGGCATATCCCATAACTTTTGACT
AA
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Coding sequence (CDS) from alignment at NODE_489_length_23951_cov_4.549455:22704..23105-

>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=402bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:22704..23105- (Gracilaria caudata M_176_S67 male)
ATGCCTTCGCGCGCGCAGCCTGTTGAATGGCTCACTGTTCACATCAAGGG
ACAGAGTTTCATGCTGCATCAAATACGAAAGATGCTTAGTTTAGCGCTAC
TCACCGCGTTACAAAGGGTTCCGCCAGACGCCATCAGTCGATCGTTTCGA
CCAGATACCTTTATCAACATCCCTCCAGCACCCGCCACAGGCCTGTTTCT
AAACTCTTGTTACTTTGATTGGTATAACCAACGGCACGCAGAGCGGTTGG
AACAACCTTTAGTGCTCGCCCCATTTGATCAGCAGCGCGAACTTTTCAAG
CAACAATTCATCTTTCCCTCTATTGCCAGCAGAGAAATCGAAGAAGATGC
CATGGGAATTTACTTTCGCACCGTTGAGGCATATCCCATAACTTTTGACT
AA
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