Gcaud10071.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud10071.t1
Unique NameGcaud10071.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Homology
BLAST of Gcaud10071.t1 vs. uniprot
Match: A0A2V3J2I6_9FLOR (tRNA pseudouridine synthase A, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2I6_9FLOR)

HSP 1 Score: 171 bits (432), Expect = 1.800e-49
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 0
Query:    9 EWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAYPITF 132
            ++L + ++GQSFMLHQIRKM+SLALLT L +VP DAI R+  P T +NIPPAP TGLFL+ C+FDWYN RHA  L QPL L+ +D QRELFK+ +IFPSIA R +++D+M IYFRTVEA+P+ F
Sbjct:  250 QYLRIRVRGQSFMLHQIRKMVSLALLTCLHQVPSDAIPRALHPATLVNIPPAPPTGLFLDCCHFDWYNNRHAAVLPQPLSLSTYDAQRELFKRNYIFPSIARRAMQDDSMSIYFRTVEAHPVQF 373          
BLAST of Gcaud10071.t1 vs. uniprot
Match: R7QMB7_CHOCR (PseudoU_synth_1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMB7_CHOCR)

HSP 1 Score: 146 bits (368), Expect = 6.100e-40
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 0
Query:   10 WLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAYPITF 132
            W+ ++++GQSFMLHQIRKM+S A+L      P D + +SF  +  IN+PPAPA GLFL+ C+F WYN+RH ERL +PL L  F+  RE FK + IFPSIA R  E+DA+  YFRT E +PI F
Sbjct:  252 WVRIYVRGQSFMLHQIRKMVSAAVLIHNSDAPEDTVQKSFEQNVLINVPPAPAVGLFLDCCHFRWYNERHKERLPEPLSLHSFESAREKFKHEHIFPSIARRAAEDDALEAYFRTAEKHPIQF 374          
BLAST of Gcaud10071.t1 vs. uniprot
Match: PUS1_ASHGO (tRNA pseudouridine synthase 1 n=2 Tax=Eremothecium TaxID=33170 RepID=PUS1_ASHGO)

HSP 1 Score: 92.0 bits (227), Expect = 3.990e-19
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 0
Query:    9 EWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAY 128
            EW+++ I GQSFMLHQIRKM+S+A L A     P+ I++S+ P   INIP APA GL L S  ++ YN+R  E   +P+    + ++ + FK   I+  I   E++E+    +F  ++A+
Sbjct:  337 EWVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQK-INIPKAPALGLLLESPVYEGYNKRLLEFGYEPIDFRNYQKEMDTFKMVHIYDKIYKEEVDENVFNAFFNYIDAF 455          
BLAST of Gcaud10071.t1 vs. uniprot
Match: A0A1G4M9L3_LACFM (LAFE_0C04324g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4M9L3_LACFM)

HSP 1 Score: 91.3 bits (225), Expect = 7.530e-19
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 0
Query:    9 EWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAY 128
            EW+++ I GQSFMLHQIRKM+S+A L      PP+ IS S+ P   INIP APA GL L    ++ YN+R  E   QP+  + +  + + FK + I+  I   E+ E+    +F  ++++
Sbjct:  344 EWVSIKIHGQSFMLHQIRKMISMATLVTRCCCPPERISESYGPQK-INIPKAPALGLLLECPVYEGYNKRLEEFGYQPIDFSKYQDKMDSFKMKHIYDKIYQEEVNENVFNAFFSYIDSF 462          
BLAST of Gcaud10071.t1 vs. uniprot
Match: A0A1Y2G763_9FUNG (Pseudouridine synthase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G763_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-18
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 0
Query:    2 PSRAQPVEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAY 128
            P   Q  EWL++ + GQSFMLHQIRKM+ L ++      P   IS +F+ +  INIP AP+ GL L    FD YN++   +  QP+V  PF ++ E FK+++I+  I   E+E +    Y + ++ +
Sbjct:  288 PKMIQGTEWLSLKVHGQSFMLHQIRKMVGLIVMIIRTDTPLKLISETFKSNK-INIPKAPSLGLLLERPLFDTYNRKFQGK-HQPIVFDPFKEEMEAFKEKYIYEGIIKEELEFNRFDEYLQIMDGH 412          
BLAST of Gcaud10071.t1 vs. uniprot
Match: A0A162N8G9_PHYB8 (PseudoU_synth_1 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162N8G9_PHYB8)

HSP 1 Score: 89.7 bits (221), Expect = 1.390e-18
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 0
Query:    9 EWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAER------LEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAY 128
            EWL+V ++GQSFMLHQIRKM+S+A+LT   + P   I  SF  +  INIP APA GL L    FD +N+    +      + +P+   P+  + E FKQ++I+ +I + E  E     + RTV+A+
Sbjct:  210 EWLSVKLQGQSFMLHQIRKMVSMAILTVRSKTPLKIIKNSF-DNVRINIPKAPAVGLLLERPVFDSFNKSLQMKDATFNAVREPVEFHPYKDEIEAFKQKWIYSTIFAAEAVERGFDTFLRTVDAH 334          
BLAST of Gcaud10071.t1 vs. uniprot
Match: A7TTG9_VANPO (PseudoU_synth_1 domain-containing protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TTG9_VANPO)

HSP 1 Score: 90.5 bits (223), Expect = 1.450e-18
Identity = 47/124 (37.90%), Postives = 73/124 (58.87%), Query Frame = 0
Query:    5 AQPVEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTVEAY 128
            A   EW+++ I GQSFMLHQIRKM+S+A L      P   IS+++ P   INIP APA GL L S  F+ YN+R  +    P+  + F ++ + FK + I+  I   E++E+    +F  ++++
Sbjct:  343 AAKTEWISIKIHGQSFMLHQIRKMISMATLVTRCGCPVSRISQAYGPQK-INIPKAPALGLLLESPVFEGYNKRLEKFGYNPIDFSKFQKEMDAFKMKHIYDKIYKEEVDENVFNAFFSYIDSF 465          
BLAST of Gcaud10071.t1 vs. uniprot
Match: A0A1U8MNH0_GOSHI (tRNA pseudouridine synthase A, mitochondrial-like n=17 Tax=Gossypium TaxID=3633 RepID=A0A1U8MNH0_GOSHI)

HSP 1 Score: 90.5 bits (223), Expect = 1.490e-18
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 0
Query:    8 VEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTV 125
            ++++   + GQSFMLHQIRKM+ +A+       P   I  + R D +INIP AP  GL+L+ C F  YNQ+  +  E+ L +  ++++ E FK +FI+  IAS E EE  +G++  ++
Sbjct:  433 IDFVKCEVVGQSFMLHQIRKMIGMAVAVMRGCAPESLIETALRKDVYINIPTAPEVGLYLDECLFSSYNQKWKDSHEE-LSMKAYEEEAEEFKMKFIYSHIASTEREEGVVGLWLHSL 549          
BLAST of Gcaud10071.t1 vs. uniprot
Match: G7JGT4_MEDTR (tRNA pseudouridine synthase n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7JGT4_MEDTR)

HSP 1 Score: 89.4 bits (220), Expect = 1.690e-18
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    8 VEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTV 125
            +E++   I GQSFMLHQIRKM+ LA+       P   I ++ + D  I +P AP  GL+L+ C+F  YNQ+  +  E+  + A ++++ E FK Q+I+P IAS E +E  +G++  ++
Sbjct:  207 MEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKA-YEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSL 323          
BLAST of Gcaud10071.t1 vs. uniprot
Match: G7JGU0_MEDTR (Putative pseudouridylate synthase, tRNA pseudouridine(38-40) synthase n=10 Tax=Trifolieae TaxID=163742 RepID=G7JGU0_MEDTR)

HSP 1 Score: 89.4 bits (220), Expect = 3.570e-18
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    8 VEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFRPDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFKQQFIFPSIASREIEEDAMGIYFRTV 125
            +E++   I GQSFMLHQIRKM+ LA+       P   I ++ + D  I +P AP  GL+L+ C+F  YNQ+  +  E+  + A ++++ E FK Q+I+P IAS E +E  +G++  ++
Sbjct:  376 MEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKA-YEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSL 492          
The following BLAST results are available for this feature:
BLAST of Gcaud10071.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2I6_9FLOR1.800e-4963.71tRNA pseudouridine synthase A, mitochondrial n=1 T... [more]
R7QMB7_CHOCR6.100e-4054.47PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
PUS1_ASHGO3.990e-1939.17tRNA pseudouridine synthase 1 n=2 Tax=Eremothecium... [more]
A0A1G4M9L3_LACFM7.530e-1939.17LAFE_0C04324g1_1 n=1 Tax=Lachancea fermentati TaxI... [more]
A0A1Y2G763_9FUNG1.110e-1837.80Pseudouridine synthase n=1 Tax=Lobosporangium tran... [more]
A0A162N8G9_PHYB81.390e-1840.48PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A7TTG9_VANPO1.450e-1837.90PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A1U8MNH0_GOSHI1.490e-1838.14tRNA pseudouridine synthase A, mitochondrial-like ... [more]
G7JGT4_MEDTR1.690e-1838.14tRNA pseudouridine synthase n=2 Tax=Medicago trunc... [more]
G7JGU0_MEDTR3.570e-1838.14Putative pseudouridylate synthase, tRNA pseudourid... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 8..73
e-value: 4.9E-8
score: 33.4
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 2..132
e-value: 1.3E-29
score: 105.1
NoneNo IPR availablePANTHERPTHR11142:SF4TRNA PSEUDOURIDINE SYNTHASE Acoord: 7..127
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 38..42
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..133
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 29..37
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 7..127
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 8..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_489_length_23951_cov_4.549455contigNODE_489_length_23951_cov_4.549455:22704..23105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10071.t1Gcaud10071.t1Gracilaria caudata M_176_S67 malemRNANODE_489_length_23951_cov_4.549455 22704..23105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud10071.t1 ID=Gcaud10071.t1|Name=Gcaud10071.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MPSRAQPVEWLTVHIKGQSFMLHQIRKMLSLALLTALQRVPPDAISRSFR
PDTFINIPPAPATGLFLNSCYFDWYNQRHAERLEQPLVLAPFDQQRELFK
QQFIFPSIASREIEEDAMGIYFRTVEAYPITFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020103PsdUridine_synth_cat_dom_sf