Gcaud8025.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8025.t1
Unique Name	Gcaud8025.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_47_length_66049_cov_4.331180	contig	NODE_47_length_66049_cov_4.331180:32972..34717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8025	Gcaud8025	Gracilaria caudata M_176_S67 male	gene	NODE_47_length_66049_cov_4.331180 32972..34717 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1.start1	Gcaud8025.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_47_length_66049_cov_4.331180 32972..32974 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1.CDS1	Gcaud8025.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_47_length_66049_cov_4.331180 32972..34717 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1.exon1	Gcaud8025.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_47_length_66049_cov_4.331180 32972..34717 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1.stop1	Gcaud8025.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_47_length_66049_cov_4.331180 34715..34717 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1	Gcaud8025.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_47_length_66049_cov_4.331180 32972..34717 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+
coding sequence from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+

mRNA sequence

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp
MTQVLIVIAVVYGAILNLLAQPWSSTESMLERRRNDVVAIILWLGLLGLA
AETTRSGIKAVDTESALDLQDWTALILPFALAAPYLLELIATLVRQIEMW
RWMRNATIHALPIAWLYRTMTVGELDHDGLWFCRRCWAPWNISVYDLNIF
SRDCSFWSCTSRDASLYRLCHRWLLVLFSSVNYMRKRTVVNFNRGQYFRA
FQTFIAFVFTSFLTFFTGSLFLFSLFEVLLLLAFDYLWWLNCRAKGIIIA
RYRTVYFGRQEMQRIFEHSIEIKTSLHVYEGLSLDIVHNRIMGAVITTTA
VLENSFRSAYLSVPVYEFCISNRKALRERYGYVGCNLDRLIKQVRLLLEM
RHTPGLLSITSSSGTIEASLHNNIESILSVAIFFKSIVLYNIVSRIAEIE
SIIEKRLTSDSDLSGEAITRERVVYIDARNAMFWILWILVTIDWQDPQAF
WSAKRSDKIEVDQIERLYDEFPDNKTDVLYVIATFLSRCRYCDRYGFQDE
TSFYPEVRSLGVIHGKDIIEQEFEVLSKALQRHRSLTLLDWVAREYNISW
SDRGRGGGLLHCSWEDNTGAKVEAECELVLV*

spliced messenger RNA

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGGTTTTGATTGTTATTGCCGTTGTATACGGTGCAATTCTCAA
CCTTCTTGCGCAACCATGGTCTTCGACTGAGTCTATGCTCGAGCGTCGAC
GAAACGATGTGGTGGCTATCATTCTCTGGCTCGGCCTTCTTGGTCTAGCA
GCAGAAACAACTCGCTCTGGAATTAAGGCTGTGGACACAGAAAGCGCACT
CGATTTACAAGATTGGACAGCTCTCATTCTTCCTTTTGCCCTCGCAGCTC
CATATCTTTTGGAACTCATTGCCACGCTTGTTCGCCAGATTGAAATGTGG
CGTTGGATGCGTAATGCCACTATTCACGCTCTCCCCATTGCATGGCTTTA
TCGAACCATGACCGTTGGAGAACTTGATCATGATGGCTTATGGTTTTGTC
GTCGCTGTTGGGCTCCGTGGAACATATCTGTGTATGACCTCAACATCTTT
TCCAGGGATTGCAGCTTCTGGTCTTGCACCAGTCGCGATGCGTCCTTGTA
TCGTCTCTGTCACAGATGGCTGCTTGTTCTTTTCTCTTCAGTGAATTACA
TGCGCAAACGCACAGTAGTTAACTTTAATCGAGGCCAATACTTTCGAGCA
TTTCAGACTTTTATCGCATTTGTGTTCACATCCTTCCTCACTTTCTTCAC
TGGCAGTCTATTTCTTTTTTCGTTGTTCGAGGTACTTTTGCTGTTGGCCT
TTGATTATCTCTGGTGGTTGAACTGTCGAGCGAAAGGAATCATTATAGCT
CGTTATCGGACAGTTTATTTTGGGCGTCAAGAGATGCAACGTATCTTTGA
GCACAGCATTGAAATCAAGACATCCCTGCATGTCTATGAAGGCCTTAGTC
TCGATATCGTGCACAATAGGATCATGGGAGCCGTTATCACCACAACAGCA
GTACTAGAGAACTCATTCCGCAGTGCCTACCTCTCGGTGCCAGTGTACGA
GTTCTGCATTTCCAATCGAAAGGCATTGAGAGAAAGATACGGATACGTAG
GATGTAATCTAGATCGCCTCATCAAACAGGTTCGATTGTTACTGGAAATG
AGGCACACACCAGGCCTTCTCTCTATCACATCTTCGTCAGGCACTATAGA
AGCGTCTCTTCATAACAACATTGAATCCATTCTCAGCGTTGCCATTTTCT
TCAAATCGATAGTGCTGTACAACATTGTTTCACGTATAGCAGAAATTGAA
TCAATAATCGAGAAACGCTTAACATCAGATTCCGACCTTTCTGGGGAGGC
CATAACTCGCGAACGTGTTGTTTACATAGACGCTCGGAACGCTATGTTTT
GGATCCTATGGATCCTCGTCACAATTGATTGGCAAGATCCTCAGGCTTTT
TGGTCTGCGAAACGCTCAGACAAAATAGAAGTGGATCAAATTGAGAGGCT
GTACGATGAATTTCCTGATAACAAAACAGATGTTCTGTACGTCATTGCAA
CCTTTCTAAGCAGATGCAGATATTGTGACCGTTATGGGTTCCAAGATGAG
ACTAGTTTCTACCCAGAGGTGCGGTCCTTGGGAGTTATACATGGAAAGGA
CATTATTGAGCAAGAATTTGAGGTTTTGTCGAAAGCACTCCAACGACATC
GGTCATTAACCTTACTTGATTGGGTCGCGCGCGAGTACAATATTTCTTGG
AGTGACAGAGGCAGAGGCGGAGGTCTGTTGCATTGCTCTTGGGAGGATAA
TACGGGCGCAAAAGTCGAGGCGGAATGCGAACTTGTCCTCGTATGA

protein sequence of Gcaud8025.t1

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=582bp
MTQVLIVIAVVYGAILNLLAQPWSSTESMLERRRNDVVAIILWLGLLGLA
AETTRSGIKAVDTESALDLQDWTALILPFALAAPYLLELIATLVRQIEMW
RWMRNATIHALPIAWLYRTMTVGELDHDGLWFCRRCWAPWNISVYDLNIF
SRDCSFWSCTSRDASLYRLCHRWLLVLFSSVNYMRKRTVVNFNRGQYFRA
FQTFIAFVFTSFLTFFTGSLFLFSLFEVLLLLAFDYLWWLNCRAKGIIIA
RYRTVYFGRQEMQRIFEHSIEIKTSLHVYEGLSLDIVHNRIMGAVITTTA
VLENSFRSAYLSVPVYEFCISNRKALRERYGYVGCNLDRLIKQVRLLLEM
RHTPGLLSITSSSGTIEASLHNNIESILSVAIFFKSIVLYNIVSRIAEIE
SIIEKRLTSDSDLSGEAITRERVVYIDARNAMFWILWILVTIDWQDPQAF
WSAKRSDKIEVDQIERLYDEFPDNKTDVLYVIATFLSRCRYCDRYGFQDE
TSFYPEVRSLGVIHGKDIIEQEFEVLSKALQRHRSLTLLDWVAREYNISW
SDRGRGGGLLHCSWEDNTGAKVEAECELVLV*

mRNA from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+ (Gracilaria caudata M_176_S67 male)
ATGACGCAGGTTTTGATTGTTATTGCCGTTGTATACGGTGCAATTCTCAA
CCTTCTTGCGCAACCATGGTCTTCGACTGAGTCTATGCTCGAGCGTCGAC
GAAACGATGTGGTGGCTATCATTCTCTGGCTCGGCCTTCTTGGTCTAGCA
GCAGAAACAACTCGCTCTGGAATTAAGGCTGTGGACACAGAAAGCGCACT
CGATTTACAAGATTGGACAGCTCTCATTCTTCCTTTTGCCCTCGCAGCTC
CATATCTTTTGGAACTCATTGCCACGCTTGTTCGCCAGATTGAAATGTGG
CGTTGGATGCGTAATGCCACTATTCACGCTCTCCCCATTGCATGGCTTTA
TCGAACCATGACCGTTGGAGAACTTGATCATGATGGCTTATGGTTTTGTC
GTCGCTGTTGGGCTCCGTGGAACATATCTGTGTATGACCTCAACATCTTT
TCCAGGGATTGCAGCTTCTGGTCTTGCACCAGTCGCGATGCGTCCTTGTA
TCGTCTCTGTCACAGATGGCTGCTTGTTCTTTTCTCTTCAGTGAATTACA
TGCGCAAACGCACAGTAGTTAACTTTAATCGAGGCCAATACTTTCGAGCA
TTTCAGACTTTTATCGCATTTGTGTTCACATCCTTCCTCACTTTCTTCAC
TGGCAGTCTATTTCTTTTTTCGTTGTTCGAGGTACTTTTGCTGTTGGCCT
TTGATTATCTCTGGTGGTTGAACTGTCGAGCGAAAGGAATCATTATAGCT
CGTTATCGGACAGTTTATTTTGGGCGTCAAGAGATGCAACGTATCTTTGA
GCACAGCATTGAAATCAAGACATCCCTGCATGTCTATGAAGGCCTTAGTC
TCGATATCGTGCACAATAGGATCATGGGAGCCGTTATCACCACAACAGCA
GTACTAGAGAACTCATTCCGCAGTGCCTACCTCTCGGTGCCAGTGTACGA
GTTCTGCATTTCCAATCGAAAGGCATTGAGAGAAAGATACGGATACGTAG
GATGTAATCTAGATCGCCTCATCAAACAGGTTCGATTGTTACTGGAAATG
AGGCACACACCAGGCCTTCTCTCTATCACATCTTCGTCAGGCACTATAGA
AGCGTCTCTTCATAACAACATTGAATCCATTCTCAGCGTTGCCATTTTCT
TCAAATCGATAGTGCTGTACAACATTGTTTCACGTATAGCAGAAATTGAA
TCAATAATCGAGAAACGCTTAACATCAGATTCCGACCTTTCTGGGGAGGC
CATAACTCGCGAACGTGTTGTTTACATAGACGCTCGGAACGCTATGTTTT
GGATCCTATGGATCCTCGTCACAATTGATTGGCAAGATCCTCAGGCTTTT
TGGTCTGCGAAACGCTCAGACAAAATAGAAGTGGATCAAATTGAGAGGCT
GTACGATGAATTTCCTGATAACAAAACAGATGTTCTGTACGTCATTGCAA
CCTTTCTAAGCAGATGCAGATATTGTGACCGTTATGGGTTCCAAGATGAG
ACTAGTTTCTACCCAGAGGTGCGGTCCTTGGGAGTTATACATGGAAAGGA
CATTATTGAGCAAGAATTTGAGGTTTTGTCGAAAGCACTCCAACGACATC
GGTCATTAACCTTACTTGATTGGGTCGCGCGCGAGTACAATATTTCTTGG
AGTGACAGAGGCAGAGGCGGAGGTCTGTTGCATTGCTCTTGGGAGGATAA
TACGGGCGCAAAAGTCGAGGCGGAATGCGAACTTGTCCTCGTATGA

Coding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1746bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:32972..34717+ (Gracilaria caudata M_176_S67 male)
ATGACGCAGGTTTTGATTGTTATTGCCGTTGTATACGGTGCAATTCTCAA
CCTTCTTGCGCAACCATGGTCTTCGACTGAGTCTATGCTCGAGCGTCGAC
GAAACGATGTGGTGGCTATCATTCTCTGGCTCGGCCTTCTTGGTCTAGCA
GCAGAAACAACTCGCTCTGGAATTAAGGCTGTGGACACAGAAAGCGCACT
CGATTTACAAGATTGGACAGCTCTCATTCTTCCTTTTGCCCTCGCAGCTC
CATATCTTTTGGAACTCATTGCCACGCTTGTTCGCCAGATTGAAATGTGG
CGTTGGATGCGTAATGCCACTATTCACGCTCTCCCCATTGCATGGCTTTA
TCGAACCATGACCGTTGGAGAACTTGATCATGATGGCTTATGGTTTTGTC
GTCGCTGTTGGGCTCCGTGGAACATATCTGTGTATGACCTCAACATCTTT
TCCAGGGATTGCAGCTTCTGGTCTTGCACCAGTCGCGATGCGTCCTTGTA
TCGTCTCTGTCACAGATGGCTGCTTGTTCTTTTCTCTTCAGTGAATTACA
TGCGCAAACGCACAGTAGTTAACTTTAATCGAGGCCAATACTTTCGAGCA
TTTCAGACTTTTATCGCATTTGTGTTCACATCCTTCCTCACTTTCTTCAC
TGGCAGTCTATTTCTTTTTTCGTTGTTCGAGGTACTTTTGCTGTTGGCCT
TTGATTATCTCTGGTGGTTGAACTGTCGAGCGAAAGGAATCATTATAGCT
CGTTATCGGACAGTTTATTTTGGGCGTCAAGAGATGCAACGTATCTTTGA
GCACAGCATTGAAATCAAGACATCCCTGCATGTCTATGAAGGCCTTAGTC
TCGATATCGTGCACAATAGGATCATGGGAGCCGTTATCACCACAACAGCA
GTACTAGAGAACTCATTCCGCAGTGCCTACCTCTCGGTGCCAGTGTACGA
GTTCTGCATTTCCAATCGAAAGGCATTGAGAGAAAGATACGGATACGTAG
GATGTAATCTAGATCGCCTCATCAAACAGGTTCGATTGTTACTGGAAATG
AGGCACACACCAGGCCTTCTCTCTATCACATCTTCGTCAGGCACTATAGA
AGCGTCTCTTCATAACAACATTGAATCCATTCTCAGCGTTGCCATTTTCT
TCAAATCGATAGTGCTGTACAACATTGTTTCACGTATAGCAGAAATTGAA
TCAATAATCGAGAAACGCTTAACATCAGATTCCGACCTTTCTGGGGAGGC
CATAACTCGCGAACGTGTTGTTTACATAGACGCTCGGAACGCTATGTTTT
GGATCCTATGGATCCTCGTCACAATTGATTGGCAAGATCCTCAGGCTTTT
TGGTCTGCGAAACGCTCAGACAAAATAGAAGTGGATCAAATTGAGAGGCT
GTACGATGAATTTCCTGATAACAAAACAGATGTTCTGTACGTCATTGCAA
CCTTTCTAAGCAGATGCAGATATTGTGACCGTTATGGGTTCCAAGATGAG
ACTAGTTTCTACCCAGAGGTGCGGTCCTTGGGAGTTATACATGGAAAGGA
CATTATTGAGCAAGAATTTGAGGTTTTGTCGAAAGCACTCCAACGACATC
GGTCATTAACCTTACTTGATTGGGTCGCGCGCGAGTACAATATTTCTTGG
AGTGACAGAGGCAGAGGCGGAGGTCTGTTGCATTGCTCTTGGGAGGATAA
TACGGGCGCAAAAGTCGAGGCGGAATGCGAACTTGTCCTCGTATGA