Gcaud8025.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8025.t1
Unique Name	Gcaud8025.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	582

Homology

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BLAST of Gcaud8025.t1 vs. uniprot
Match: R7QFH6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH6_CHOCR)

HSP 1 Score: 643 bits (1659), Expect = 7.910e-224
Identity = 345/585 (58.97%), Postives = 416/585 (71.11%), Query Frame = 0

Query:    1 MTQVLIVIAVVYGAILNLLAQPWSSTESMLERRRNDVVAIILWLGLLGLAAETTRSGIKAVDTESALDLQDWTALILPFALAAPYLLELIATLVRQIEMWRWMRNATIHALPIAWLYRTMTVGELDHDGLWFCRRCWAPWNISVYDLNIFS----RDCSFWSCTSRDASLYRLCHRWLLVLFSSVNYMRKRTVVNFNRGQYFRAFQTFIAFVFTSFLTFFTGSLFLFSLFEVLLLLAFDYLWWLNCRAKGIIIARYRTVYFGRQEMQRIFEHSIEIKTSLHVYEGLSLDIVHNRIMGAVITTTAVLENSFRSAYLSVPVYEFCISNRKALRERYGYVGCNLDRLIKQVRLLLEMRHTPGLLSITSSSGTIEASLHNNIESILSVAIFFKSIVLYNIVSRIAEIESIIEKRLTSDSDLSGEAITRERVVYIDARNAMFWILWILVTIDWQDPQAFWSAKRSDKIEVDQIERLYDEFPDNKTDVLYVIATFLSRCRYCDRYGFQDETSFYPEVRSLGVIHGKDIIEQEFEVLSKALQRHRSLTLLDWVAREYNISWS-DRGRGGGLLHCSWEDNTGAKVEAECELVL 580
            M+QVLIV+ + YG++LNLLA+PWSST+S+LERRRND++A          A  T RSGI    T+ A DLQDWTALILPFALAAPYLLELIATLVRQ+EMW WMR A IHALPIAWLYRT+TV E D DG+WF    W P   ++  L+  S    R  SFW  TSR ASL+ L + WL VL S+  Y   +   N  R Q           + T  LT   G L+  SL E LLLL+FD+ WW+ C     I+ARY TV+FGRQEMQ IFE S+ IK SL V EGL ++ VH+RIM AVITTTAVLEN+FR AYL VPVYE  ISNRKALR++Y YVGCNLDRLIKQVR+LLE+RHT GLLSITSSSGTIEASLHNNIESILSVA+FF S  LY+I +R+AE+E +IE+R+  +  ++ EA+TRERVVYIDARNAMFW+LWI+VT +W D   FW+  + + I+ ++ ER   EFP+ +T+ LYVIATFLSRCRYCDRYG QDE  FY EVR LG   G   +E  F+ LS  L   RSL+LL+WV REY + W  +R RGGGL  C W+ +TG + EA C + L
Sbjct:   59 MSQVLIVVVITYGSLLNLLAKPWSSTDSLLERRRNDILAXXXXXXXXXXAVLTVRSGIANSTTDDAFDLQDWTALILPFALAAPYLLELIATLVRQLEMWPWMRAACIHALPIAWLYRTITVAEQDPDGIWFRSHLWRPSPPTLRKLSTLSPASPRVKSFWETTSRRASLHHLFYTWLTVLVSASRYAAHQVRHNSRRSQILPCVNATCTLLLTVILTSLMGLLYASSLVEFLLLLSFDFHWWVRCHIHERILARYDTVHFGRQEMQSIFEQSMAIKRSLRVCEGLDVERVHDRIMTAVITTTAVLENAFRRAYLVVPVYEQSISNRKALRDKYEYVGCNLDRLIKQVRVLLEVRHTSGLLSITSSSGTIEASLHNNIESILSVALFFPSTTLYHITARVAELEGMIEERVRQNPGMAAEAVTRERVVYIDARNAMFWLLWIVVTKEWVDVAGFWAGDQREGIDREEDERTQKEFPNARTETLYVIATFLSRCRYCDRYGMQDEGGFYKEVRELGKKIGPKRVEAVFDELSGTLSICRSLSLLEWVTREYKLEWGGERERGGGL-RCMWQSDTGERKEAVCNIAL 642

The following BLAST results are available for this feature:

BLAST of Gcaud8025.t1 vs. uniprot

BLAST of Gcaud8025.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QFH6_CHOCR	7.910e-224	58.97	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 72..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 24..34
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..52
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 216..220
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 240..581
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 95..196
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 221..239
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 197..215
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 53..71
None	No IPR available	TMHMM	TMhelix		coord: 4..26
None	No IPR available	TMHMM	TMhelix		coord: 72..94
None	No IPR available	TMHMM	TMhelix		coord: 38..57
None	No IPR available	TMHMM	TMhelix		coord: 204..226

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_47_length_66049_cov_4.331180	contig	NODE_47_length_66049_cov_4.331180:32972..34717 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8025.t1	Gcaud8025.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_47_length_66049_cov_4.331180 32972..34717 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8025.t1 ID=Gcaud8025.t1|Name=Gcaud8025.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=582bp
MTQVLIVIAVVYGAILNLLAQPWSSTESMLERRRNDVVAIILWLGLLGLA
AETTRSGIKAVDTESALDLQDWTALILPFALAAPYLLELIATLVRQIEMW
RWMRNATIHALPIAWLYRTMTVGELDHDGLWFCRRCWAPWNISVYDLNIF
SRDCSFWSCTSRDASLYRLCHRWLLVLFSSVNYMRKRTVVNFNRGQYFRA
FQTFIAFVFTSFLTFFTGSLFLFSLFEVLLLLAFDYLWWLNCRAKGIIIA
RYRTVYFGRQEMQRIFEHSIEIKTSLHVYEGLSLDIVHNRIMGAVITTTA
VLENSFRSAYLSVPVYEFCISNRKALRERYGYVGCNLDRLIKQVRLLLEM
RHTPGLLSITSSSGTIEASLHNNIESILSVAIFFKSIVLYNIVSRIAEIE
SIIEKRLTSDSDLSGEAITRERVVYIDARNAMFWILWILVTIDWQDPQAF
WSAKRSDKIEVDQIERLYDEFPDNKTDVLYVIATFLSRCRYCDRYGFQDE
TSFYPEVRSLGVIHGKDIIEQEFEVLSKALQRHRSLTLLDWVAREYNISW
SDRGRGGGLLHCSWEDNTGAKVEAECELVLV*