Gcaud7470.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7470.t1
Unique NameGcaud7470.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length247
Homology
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A2V3IVX8_9FLOR (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVX8_9FLOR)

HSP 1 Score: 316 bits (809), Expect = 6.490e-107
Identity = 161/194 (82.99%), Postives = 178/194 (91.75%), Query Frame = 0
Query:   54 DHFS-SADEQRGNPALSQNSIFHENPNPLQRSMVWPPMNPDQPPVWLRNINSATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEYMD 246
            D+FS SADE    P LSQN IF++  NPLQ+ MVWPP+NP+QPP+W+R IN+ATETC+FKA +SA AGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSY+KNFA+FGASFS +ECTVEK+RARHDIWNSVIGGCAAGAFMSSAPSE++P RARA QMAFGCASVAAFSAAIDYYMEYMD
Sbjct:   13 DNFSNSADEA---PPLSQNPIFNDR-NPLQQPMVWPPLNPNQPPLWIRTINNATETCIFKASMSAVAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYAKNFAMFGASFSVSECTVEKLRARHDIWNSVIGGCAAGAFMSSAPSERIPHRARAAQMAFGCASVAAFSAAIDYYMEYMD 202          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A5J4Z0J1_PORPP (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0J1_PORPP)

HSP 1 Score: 166 bits (420), Expect = 3.700e-48
Identity = 79/142 (55.63%), Postives = 105/142 (73.94%), Query Frame = 0
Query:  102 INSATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYME 243
            +N+  E+C FKA +S  AGGG+G+ FGL FGGY+ AVD+AVE++G    + RVGFK A R+M SY+K+FA++GA FS++EC +E  RARHDIWNSV  GC  GA ++SAP + +  +AR  QMA  CA +AAFS AID YM+
Sbjct:   42 LNAVGESCAFKALLSTVAGGGIGLFFGLLFGGYAQAVDEAVESKGTTVQRFRVGFKSAGRAMGSYAKSFAIWGAVFSSSECAIESYRARHDIWNSVAAGCVTGATLASAPKQSIGAKARIQQMAVACAGMAAFSGAIDLYMD 183          
BLAST of Gcaud7470.t1 vs. uniprot
Match: M1VHJ2_CYAM1 (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VHJ2_CYAM1)

HSP 1 Score: 154 bits (390), Expect = 1.190e-43
Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 0
Query:   81 LQRSMVWPPMNPDQPPVWLRNINSATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEY 244
            L  ++ +P  NP +     +      E+C FKA  +A AGGGLGV  GLF GG+S  +D+AVE + P   +LR   K  A  +R+YSKNFAL+GA+++ AEC+VEK RARHD+WNS+I GCA GA ++S P   +  R R  QM+ GC  VAAFS AIDY++E+
Sbjct:   22 LPPNLQFPERNPSE-----KFAEMVLESCAFKAVAAAIAGGGLGVALGLFIGGFSAELDRAVEAQSPWREQLRAYGKALAAQIRTYSKNFALWGATYTIAECSVEKYRARHDLWNSLIAGCATGAVLASQPRASMSARTRGQQMSVGCLGVAAFSCAIDYWLEH 180          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A1X6NRT5_PORUM (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRT5_PORUM)

HSP 1 Score: 152 bits (383), Expect = 2.640e-43
Identity = 77/125 (61.60%), Postives = 93/125 (74.40%), Query Frame = 0
Query:  120 GGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEK-LPPRARAMQMAFGCASVAAFSAAIDYYME 243
            GGGLG+  GL FGGY++ VD+AVE +GP   KLRVGF  A  SM  YS++FA  GA F+  +C VEK RARHD+WNS++GGCAAGA +SSAP  + +P RARA  MA GCA  AAFS AIDY+ME
Sbjct:    2 GGGLGLFAGLLFGGYASGVDRAVEMKGPMRAKLRVGFAAAGTSMAEYSRSFARLGAVFALCDCAVEKARARHDLWNSLLGGCAAGAALSSAPRTRGVPARARAGNMALGCAGFAAFSTAIDYWME 126          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A7J7IQZ2_9RHOD (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQZ2_9RHOD)

HSP 1 Score: 149 bits (377), Expect = 1.070e-41
Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 0
Query:  107 ETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEY 244
            E+C FKA  +A AGGGLGV  GLF GG+S  +D+ VE + P   +LR   +  A  +R+YSKNFAL+GA+++  EC+VEK RARHD+WNS+I GC  GA ++S P  ++  R R  QM+ GC  VAAFS AIDY++E+
Sbjct:   43 ESCAFKAAAAAIAGGGLGVALGLFVGGFSTELDRTVEAQAPWRQQLRAYGRALAAQIRTYSKNFALWGATYTITECSVEKYRARHDLWNSLIAGCMTGAVLASQPRTQMSLRTRGQQMSVGCLGVAAFSCAIDYWLEH 180          
BLAST of Gcaud7470.t1 vs. uniprot
Match: R7QDQ1_CHOCR (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDQ1_CHOCR)

HSP 1 Score: 128 bits (322), Expect = 1.020e-34
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0
Query:  163 MRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEYMD 246
            M SY+K+FA+FG  FS AECTVEK+RARHDIWNS+IGGC  GA MSS P + +P RARA QMA GC  +AAFSAAIDYYMEYM+
Sbjct:    1 MSSYAKSFAMFGLVFSGAECTVEKVRARHDIWNSIIGGCVTGAVMSSQPRQSIPHRARASQMAVGCGGMAAFSAAIDYYMEYME 84          
BLAST of Gcaud7470.t1 vs. uniprot
Match: M2XRN2_GALSU (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRN2_GALSU)

HSP 1 Score: 108 bits (270), Expect = 7.290e-26
Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 0
Query:  102 INSATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEYMD 246
            I  A E+C+FK+ +S  A                   D AVET+G A  KL  G + A  +    +K FAL+G  +S  EC +EK RA+HD+WNS++ GC  G  ++S P   +  +ARA QM+ GC  VA FS A+DY++E+ +
Sbjct:   26 IEKAMESCLFKSMMSGVAXXXXXXXXXXXXXXXXXXXDTAVETQGTAKQKLLAGGRVAKNACVRQAKTFALWGTVYSGTECAIEKYRAKHDLWNSLVAGCITGGVLTSQPKIPMGAKARATQMSVGCGGVAMFSLALDYFLEHRE 170          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A0G4IP81_PLABS (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IP81_PLABS)

HSP 1 Score: 104 bits (260), Expect = 1.600e-24
Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 0
Query:  104 SATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPAS-LKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYME 243
            +A E C  K   S  AGG +G++FGL  G + +++  + E +   S  K+R+  K+     +S+ KNFA+ G  +SA EC +EK RA+HD++N  + GC  GA +S+    K  P+A    M FGCA  AAFSAAID YME
Sbjct:   25 NAMENCAVKGVFSGLAGGAMGLVFGLMMGSFDHSMSMSEEYQAADSRTKIRMTMKDMVAKSKSWGKNFAVVGLIYSATECFIEKQRAKHDLYNVAMAGCVTGAALSA----KSGPQA----MLFGCAGFAAFSAAIDAYME 157          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A2T9ZHV5_9FUNG (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZHV5_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 4.340e-21
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query:  106 TETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVD--KAVETEGPASLKLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYME 243
            T +C+FK G+S  AG GLG +FGL      +++D    V TE     +++   ++  +   S +K FAL  A +S +EC +E  RAR+DI+NSV  GC  GA +++    K         M FGCA  AAFSAAI+YY++
Sbjct:   21 TGSCLFKTGLSGVAGLGLGAIFGLIM----SSIDFTNPVNTEASTKQQIKETLRDMGQKSYSTAKGFALVAAIYSGSECIIESYRARNDIYNSVSAGCVTGAALATKTGPK--------GMLFGCAGFAAFSAAIEYYLQ 148          
BLAST of Gcaud7470.t1 vs. uniprot
Match: A0A087SML1_AUXPR (Mitochondrial import inner membrane translocase subunit tim-22 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SML1_AUXPR)

HSP 1 Score: 93.6 bits (231), Expect = 6.440e-20
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 0
Query:  105 ATETCVFKAGISAFAGGGLGVLFGLFFGGYSNA---VDKAVETEGPASLKLRVGFKEAARSMRS----YSKNFALFGASFSAAECTVEKIRARHDIWNSVIGGCAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEY 244
            A   C  +  +SA  G GLG +FGLF G    A   +D  + TE      +R   K+  R+  S    Y+K F+  GA F+ +EC +EK+RA+HD +NSV  GC AGA ++ +   K         MA GC + AAFSAAID++M++
Sbjct:   51 AMNNCAVRTVLSAVMGAGLGAMFGLFMGTMDGAGLGIDGRLATENQKQ-NVRQIMKDMVRNTSSKSWSYAKGFSAMGALFAGSECVIEKMRAKHDRYNSVYAGCTAGAVLAHSGGPKA--------MALGCGTFAAFSAAIDHFMDH 188          
The following BLAST results are available for this feature:
BLAST of Gcaud7470.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVX8_9FLOR6.490e-10782.99Mitochondrial import inner membrane translocase su... [more]
A0A5J4Z0J1_PORPP3.700e-4855.63Mitochondrial import inner membrane translocase su... [more]
M1VHJ2_CYAM11.190e-4348.78Mitochondrial import inner membrane translocase su... [more]
A0A1X6NRT5_PORUM2.640e-4361.60Mitochondrial import inner membrane translocase su... [more]
A0A7J7IQZ2_9RHOD1.070e-4152.17Mitochondrial import inner membrane translocase su... [more]
R7QDQ1_CHOCR1.020e-3471.43Mitochondrial import inner membrane translocase su... [more]
M2XRN2_GALSU7.290e-2638.62Mitochondrial import inner membrane translocase su... [more]
A0A0G4IP81_PLABS1.600e-2441.84Mitochondrial import inner membrane translocase su... [more]
A0A2T9ZHV5_9FUNG4.340e-2139.29Mitochondrial import inner membrane translocase su... [more]
A0A087SML1_AUXPR6.440e-2038.78Mitochondrial import inner membrane translocase su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 109..235
e-value: 3.1E-25
score: 88.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..75
NoneNo IPR availablePANTHERPTHR14110:SF0MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22coord: 104..244
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 224..242
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..223
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 243..246
NoneNo IPR availableTMHMMTMhelixcoord: 109..131
NoneNo IPR availableTMHMMTMhelixcoord: 221..238
IPR039175Mitochondrial import inner membrane translocase subunit TIM22PANTHERPTHR14110MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22coord: 104..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_477_length_24373_cov_4.435714contigNODE_477_length_24373_cov_4.435714:14734..15474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7470.t1Gcaud7470.t1Gracilaria caudata M_176_S67 malemRNANODE_477_length_24373_cov_4.435714 14734..15474 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7470.t1 ID=Gcaud7470.t1|Name=Gcaud7470.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
LAARRTDAGGERQNLKLISDNLGSLRANALQNACLYTRAASTATMSDPFS
PSDDHFSSADEQRGNPALSQNSIFHENPNPLQRSMVWPPMNPDQPPVWLR
NINSATETCVFKAGISAFAGGGLGVLFGLFFGGYSNAVDKAVETEGPASL
KLRVGFKEAARSMRSYSKNFALFGASFSAAECTVEKIRARHDIWNSVIGG
CAAGAFMSSAPSEKLPPRARAMQMAFGCASVAAFSAAIDYYMEYMD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039175TIM22