Gcaud7207.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7207.t1
Unique NameGcaud7207.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length1594
Homology
BLAST of Gcaud7207.t1 vs. uniprot
Match: A0A2V3INI9_9FLOR (C3HC-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INI9_9FLOR)

HSP 1 Score: 569 bits (1466), Expect = 8.720e-172
Identity = 602/1674 (35.96%), Postives = 819/1674 (48.92%), Query Frame = 0
Query:    1 MASEKEDAMEKALQTDQVADPQRDSVQPDMDPGVIDVEEEAIDVEDAEXXXXXXXXSSGDENANV------VNLVSPSSGAGPQADVDVIDLEEAXXXGEEGGVEEEGSRVDDFV--------RDDVEEDANGAP----------DNEKDGVKERVSAEEANQNGSEAAQLK---EQEVKQVAIKKEPDDKQLAQTS------ESQQKQPSTDVSKADMGFEKDLGESSSMQAGAGERERTSTVPPARIERDRDTDQLV-ADGEEPQLDDSKPPQDLSQDFPKKEGVVGKVQ-PS------EQNEAAAKE----APESLPQAESGDNAIDENGADAHGEGPGTSEGVANAVQ-APAEETAS-SMAQDNQNEEGKEIISQPKSDADDAAPEIVRDRADADA--ADKAEPEVATDNSLPVVAPLKEDSAIESSGAKPEDAMDLDDAEEEXXXXXXXXXXXXXXXENGNADMELSEEEPAHDLRADGDEESEPPTATNESGGESLTTAATDHEPAE-----------------LSRRDATQGVINSEKEVE-STTRMELDSDSKGRAEQRLGQTPMKEDEDLKPPGLAEATDVQLSGATENEDANASKHAKSDTK--TAADSNLPADEDIAVSASPSGERPETEIVSSEAADGLGGSPSANLTAPLFGMRPSGFPAQPVSFRTPPSFQRTSLSPNARPFIPAAHREAMRIAALRSAVNKDEIASADGPVPMDSEVVKETPTASVPEAKEKEDSKLLFSPQQLAAPLQMESEPVQHQES--VSAPSTLQPADVQAAKQSATQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKALPLKVKKDAITKPDSKTQGKKVTFSLSHSKAVESSEPQTAPPHSESSVVVSESVHEGRPEEQKLKEENSDDGSMYEVSHVPVSVRIGNGNVMKRDSLSTVRLTVAKHGEAKLEMFKEGASSLSLFESLSASRNILRVRKVSNRPVMTVALMSNNNGGSQVAKKYFLHLGHHLYDKVFKACVAHLNSTGPNKRTGGMDSAASVTSATKRLSTPIGSDVEDIQATGIKRSVHDVRTADPKRLKAAEKRRMLQETKAKLLENLKATRKKKAGSGAGEKDHGSTDKAASIAASVPGIATHNSTAKPPTSQVVPKTPLQSITKVEAQKSAATFGSTGAVKSLNQGIQNTKPGEGTVQTPLAGFEKRKLLADKHAQSVRQKDISQERMQTDSLQKGAPKSEGGLLTTSGSSLKRKKPVGSMSAQPYAHGKRSLDQAKSTDLKRQRIGSEKNASLVGASVS---AQEKLKALREQIKAPSRGVSAKNMMTSVASATKSAVPRPSFDDMEEVKKIRTLT-------VNLTKEKEEMTKKVAVMEEQKKKMEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVKTAEEAARNDQENEEEKKISLSRCDHDNVLDFFYRLRSFKASTWPV-EEEDIGALACARHGWYNSGVNELKSSEGVTLVLGDLFESADAYERKIEEMKTALVQKHALLSGWRGKQCARDIGKELLSKERLEKNVAELRSCTAMKRVRGFAETARNLCELAAACGWRATEWGVRCEWCA-VEVRDVHLRESHFGYCLLAREAGEVRRNVELLGLDWEVEGARLGYFFRSSYGDTME 1591
            M  E EDA+EK  Q D    PQ     PD DPGVIDV++E I      XXXXX     G+ENA V      +NLV+P   A  Q DVDVIDLEEA    +E GV E  ++VDD          R  +EED   +           D E+D    RV A + +++G E   ++   + E  +  I+ +  D Q  + +      E+QQ +    +      F      S   +   GE   T  + P   E+ +DT++      E  +L  S   + +S++  + EG  G VQ PS      E NE AA +      + + Q  S D   D NG D     P   + VA   + AP E   S ++A     EEG  + ++    + D  P+     AD++   A K   + A +N +            + + +K E   DL+D ++E               +N + D +L+++EP  D         E P  T +   E L ++ TD E  E                 L+ +      ++SEK  +    + ++D  S   A     Q    E  D      A  T+V   G T   + ++  + K + K  TAA +    DE  A   + S  + + +  S + +    GS + NLTAPLFGM+    P  PVSF +PPSFQR+ LSP+A PFIPAAHR+A R A  ++ ++       D     D    ++  T   P  KE         P+++  P       V H  S  VS P   Q A V    QS                                   +P + +KD+  K +SK Q +KVTF    +  V  ++ + +P       +   S  E R +EQ+LK+E +D+GSMYEVSHVP+SVRIGNG  +KRDSLST+RL ++K GEAKLEMFKE ASSL LFESLS +RN +R+RKV+ R VMTV LM+NNNGG+QVAKKY++HLG H+YDK+F   V HLN  GP +       +A + S+ KR +   GSD E  ++   KRS+      DPKR+K AE+RR L ETKAKLLENLKA RK KAG+G   KDH +T K+    A+ P      ST+    SQ+ P            + +A   G++         IQ T        T   GF+   L       + + +     +     L+ G P      L    +S + K+P           G+      +S ++K+ R+  EK  +   ASVS    Q KLK LR++ +    G SA   +      T+S          +EVK +R L            K+K E  K +A  +E+ K      XXXXXXXXXXXXXXXXXXXXXXX     K                                 ++T   AA + +EN    K S SRCDH+NV DFF RL SFK STWPV E+ DIGA ACARHGWYNS V+ L+S++GV L L DL++  D +  +++ + TALVQ+H  LSGWRGKQCARDIGKELL +E L KNV+E++     KRVRGF E A  LCEL AACGW+     VRCEWC  V V D+HLRESH+ +C+ A E  EVRRN+ELLGLDWEVEG RLG+FFRSSYGD ++
Sbjct:    1 MVPENEDAVEKVAQPDLENLPQ-----PDTDPGVIDVDDEGIXXX---XXXXXEDECKGEENAVVDDAGSTINLVTPPPDARVQKDVDVIDLEEA----DEEGVPEGDAQVDDEDGEAQTVGGRGTLEEDGEDSDIHDASKGNHDDGEEDEGTPRVDASK-DESGDEILPVESDGQTENVEHEIEHDNPDNQKGREALSITPVENQQHEARPQLVSNSGVF---ANPSEQTEQDIGEETVTEEIAPLPDEKTKDTEKSEHVPSESQKLLTSV--EKVSRETTEAEG--GPVQHPSSTVPVTEANERAAFQLFSAVRDDVLQTTS-DATNDANGQDPGAVEPDEKDNVAQIAELAPTEPQESRTLAAKESREEG--LDAEHLKLSGDMKPQESSSAADSETGKAQKVADDAAGENEV---------DETQEAHSKSEGVSDLEDGDDEEVVEE----------DNMDMDADLTDDEPVQD---------EQPN-TLDRKPEKLESSKTDTEFTEDNQXXXXXXXXXXXXXVLTAKSENNDAVHSEKHRDMEIVQKDVDDGSGMLAINTKDQLRAVETVDEVHKTNAPDTEVVSHGDTSFSEKSSLSNNKLEGKPTTAATAESIRDEGEAQEVTDSNSKMDIDTPSKDMS--FKGSANTNLTAPLFGMQTMELPKFPVSFSSPPSFQRSRLSPSAPPFIPAAHRDANRAATPQTELDSTSHMDVDSSRTEDKPT-EQLKTMLAPAFKESAARGSQLKPEKICPPSSASPPSVPHLSSAKVSNPPVPQTAGV---SQSVAPG------------------------------GIP-QSEKDSF-KEESKAQERKVTFGSIETITVPKADSRQSPTRPAQDSI---SGSEPRVDEQELKDEETDEGSMYEVSHVPISVRIGNGTAIKRDSLSTLRLAISKSGEAKLEMFKEAASSLLLFESLSNTRNTIRIRKVAKRTVMTVTLMTNNNGGAQVAKKYYVHLGKHIYDKLFNIFVIHLNEAGPARPV----QSAPLNSSGKRAAPSSGSDAEGTKSVPGKRSLEVTDKKDPKRVKVAERRRQLLETKAKLLENLKAVRKNKAGTGV--KDHPATGKSLKRTAATPVPPPSLSTS----SQLKPSV------STTPRSTAPPSGASSTPAPPATTIQGTASHSDNPSTIAHGFDSTALKTPNKNNTTKDETAVGGQAGISKLKSGQP------LQAPSTSTRGKRPRPEQQLHRLQPGQNQSTGQESNNVKKMRVTEEK--AQAAASVSNPNMQGKLKFLRDRARRGGYGGSAATPVAGRRDPTES----------DEVKNLRILLNEKISSQTEAEKQKLEAMKGMATAKEETKMAXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDERKEMENVLTAKRAESELSSRQKNELSAEVSKLLKHMETVL-AAGSPRENL--NKESFSRCDHNNVSDFFDRLHSFKPSTWPVMEDSDIGARACARHGWYNSDVDVLRSTDGVELRLRDLYDDVDVHLEEVQRVTTALVQEHQFLSGWRGKQCARDIGKELLDRETLIKNVSEIQKHDVKKRVRGFGERADRLCELIAACGWKPHGKAVRCEWCGIVAVGDLHLRESHYKFCMFAEEQDEVRRNIELLGLDWEVEGDRLGWFFRSSYGDVVD 1544          
BLAST of Gcaud7207.t1 vs. uniprot
Match: R7QSH1_CHOCR (C3HC-type domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QSH1_CHOCR)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-12
Identity = 71/244 (29.10%), Postives = 114/244 (46.72%), Query Frame = 0
Query: 1372 EEEKKISLSRCDHDNVLDFFYRLRSFKASTWP--VEEEDIGALACARHGWYNSGVNELKSSEG--VTLVLGDLFESADAYERKIEEMKTALVQK-HALLSGWRGKQCARDI-----GKELLSKERLEKNVAELRSCTAMKRVRGF-AETARNLCELAAA-------C-GWRAT----EWGVRCEWCAVEVR---------------DVHLRESHFGYCLLAREAGEVRRNVELLGLDWEVEGAR 1577
            E  K  SLSRC+  NV DFF RL +F+ STW        +  + CARHGW+NSG++EL SSEG  +T      F+SA + + +IE ++  +V   H LLSGW G+    +       K   +  +L+ N  +L S   ++ +    +++  +  +L+AA       C  W+A     +  + C+WC   V                +  +  SH+ +C    E G+    V  + L   V+G +
Sbjct: 1427 EAHKPASLSRCEPKNVSDFFDRLHTFRPSTWRGFARGHALSPVECARHGWHNSGIDELTSSEGSVITTKFETCFDSA-SMKAEIERVRKLVVGGGHRLLSGWIGESSPFEFESLEGSKRTCNAAQLKTNAKQLESTRVVEILANRDSDSGLSSKDLSAADKYGRLACYNWKARGSEEDLDLYCDWCGRSVLLTPEDMVRSGGKGCVEFDVATSHYVFCPFRGEEGKRNAEVMRMSLAVAVDGVK 1669          
The following BLAST results are available for this feature:
BLAST of Gcaud7207.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INI9_9FLOR8.720e-17235.96C3HC-type domain-containing protein n=1 Tax=Gracil... [more]
R7QSH1_CHOCR1.150e-1229.10C3HC-type domain-containing protein n=2 Tax=Chondr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..57
NoneNo IPR availableCOILSCoilCoilcoord: 394..421
NoneNo IPR availableCOILSCoilCoilcoord: 999..1025
NoneNo IPR availableCOILSCoilCoilcoord: 1267..1336
NoneNo IPR availableGENE3D1.10.287.1490coord: 1242..1404
e-value: 3.3E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..421
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 481..516
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..628
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1142..1170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 649..832
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 691..752
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1126..1202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1186..1200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..359
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 775..810
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 607..623
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 813..832
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 987..1045
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1126..1141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 987..1040
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 422..439
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 760..774
NoneNo IPR availablePANTHERPTHR34491A-TYPE INCLUSION PROTEIN, PUTATIVE-RELATEDcoord: 29..1481
IPR012935Zinc finger, C3HC-likePFAMPF07967zf-C3HCcoord: 1388..1496
e-value: 1.3E-9
score: 38.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_476_length_24381_cov_4.240099contigNODE_476_length_24381_cov_4.240099:10767..15548 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7207.t1Gcaud7207.t1Gracilaria caudata M_176_S67 malemRNANODE_476_length_24381_cov_4.240099 10767..15548 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7207.t1 ID=Gcaud7207.t1|Name=Gcaud7207.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=1594bp
MASEKEDAMEKALQTDQVADPQRDSVQPDMDPGVIDVEEEAIDVEDAEEE
EEEEQKSSGDENANVVNLVSPSSGAGPQADVDVIDLEEAEEDGEEGGVEE
EGSRVDDFVRDDVEEDANGAPDNEKDGVKERVSAEEANQNGSEAAQLKEQ
EVKQVAIKKEPDDKQLAQTSESQQKQPSTDVSKADMGFEKDLGESSSMQA
GAGERERTSTVPPARIERDRDTDQLVADGEEPQLDDSKPPQDLSQDFPKK
EGVVGKVQPSEQNEAAAKEAPESLPQAESGDNAIDENGADAHGEGPGTSE
GVANAVQAPAEETASSMAQDNQNEEGKEIISQPKSDADDAAPEIVRDRAD
ADAADKAEPEVATDNSLPVVAPLKEDSAIESSGAKPEDAMDLDDAEEEDH
EDAAEEEHENMEDENGNADMELSEEEPAHDLRADGDEESEPPTATNESGG
ESLTTAATDHEPAELSRRDATQGVINSEKEVESTTRMELDSDSKGRAEQR
LGQTPMKEDEDLKPPGLAEATDVQLSGATENEDANASKHAKSDTKTAADS
NLPADEDIAVSASPSGERPETEIVSSEAADGLGGSPSANLTAPLFGMRPS
GFPAQPVSFRTPPSFQRTSLSPNARPFIPAAHREAMRIAALRSAVNKDEI
ASADGPVPMDSEVVKETPTASVPEAKEKEDSKLLFSPQQLAAPLQMESEP
VQHQESVSAPSTLQPADVQAAKQSATQENVVSADTLQPTLPVQPQPSANE
SKLVSARKALPLKVKKDAITKPDSKTQGKKVTFSLSHSKAVESSEPQTAP
PHSESSVVVSESVHEGRPEEQKLKEENSDDGSMYEVSHVPVSVRIGNGNV
MKRDSLSTVRLTVAKHGEAKLEMFKEGASSLSLFESLSASRNILRVRKVS
NRPVMTVALMSNNNGGSQVAKKYFLHLGHHLYDKVFKACVAHLNSTGPNK
RTGGMDSAASVTSATKRLSTPIGSDVEDIQATGIKRSVHDVRTADPKRLK
AAEKRRMLQETKAKLLENLKATRKKKAGSGAGEKDHGSTDKAASIAASVP
GIATHNSTAKPPTSQVVPKTPLQSITKVEAQKSAATFGSTGAVKSLNQGI
QNTKPGEGTVQTPLAGFEKRKLLADKHAQSVRQKDISQERMQTDSLQKGA
PKSEGGLLTTSGSSLKRKKPVGSMSAQPYAHGKRSLDQAKSTDLKRQRIG
SEKNASLVGASVSAQEKLKALREQIKAPSRGVSAKNMMTSVASATKSAVP
RPSFDDMEEVKKIRTLTVNLTKEKEEMTKKVAVMEEQKKKMEAEVERLQK
ELSKANSETAESRSEVARLRMENKTAEKNVAETVESLKKSGQELKELWKK
VSDTLEVVKTAEEAARNDQENEEEKKISLSRCDHDNVLDFFYRLRSFKAS
TWPVEEEDIGALACARHGWYNSGVNELKSSEGVTLVLGDLFESADAYERK
IEEMKTALVQKHALLSGWRGKQCARDIGKELLSKERLEKNVAELRSCTAM
KRVRGFAETARNLCELAAACGWRATEWGVRCEWCAVEVRDVHLRESHFGY
CLLAREAGEVRRNVELLGLDWEVEGARLGYFFRSSYGDTMEEG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like