Gcaud770.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud770.t1
Unique Name	Gcaud770.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	512

Homology

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BLAST of Gcaud770.t1 vs. uniprot
Match: R7QCY2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCY2_CHOCR)

HSP 1 Score: 135 bits (340), Expect = 1.070e-30
Identity = 130/415 (31.33%), Postives = 191/415 (46.02%), Query Frame = 0

Query:  169 TRLNTKLNSLPSGGAFSFMNSSEDV--DTASVASXXXXXXXXXXEDFHESRKLIRVDGSAKLSTASGVLDSSTDDEADDHAFSIDGAESVDEEEAVQVRSFGRTLAQMSLQPQSQDIVTEV---NSSLAPIPVACNTTPDRARRKQSSGSKAYTMPVSRPCSSNTLQEHILNGCE-GRGGGSKRRSRLRVTFFRRGSAKNVGRAA--------------------------------VADDERFVDDEDVIEQRMGS-FSTISCFSTRRSSTRLRAMRS------------------DRTEEGGSSSNCGEAQRKGGAQMVAVPEF----EGRR--------MVKNISLQRDDFIDFTTNGRSTSVKRSPWLTRFKSGAEDGSVSGSELGELHGTAS---SQRRVKRLLRVFGRK 511
            TR+NTKLNS+PSGGAFSFMNSSED+  D+   +           +D   SR++IRVDGSAKLS+ASG+ D           F I+GAE VDEEE +QVRSFGR+ A++SL+     I+ +    + + + +  A   + +   R++SS  +    P  RP  S+   +  L G    R    +R+SR+R+TF +R +  N  + A                                V        D D+          T SCF +R+ +   R  RS                  D+++ GG     G  + +   Q+V+ P+     EGRR        +VKN+SLQ+DD+IDF TN   +  +R PWL R  S     S +  +   +        ++++ KR  RVF RK
Sbjct:  128 TRINTKLNSMPSGGAFSFMNSSEDIVSDSLDTSDSDTETASSTDDDLRSSRRMIRVDGSAKLSSASGLNDDDFLXXXXXDGFGIEGAERVDEEEDIQVRSFGRSFARVSLKDGEDVIIRDPRKKDGARSEVAFALPGSEEDGGRRRSSSVRVPDRP--RPLESDG--DSGLRGMNTSRSDPPRRKSRMRLTFNKRAATANAVKNAQRKSMXXXXXXXXXXXXXXXXXXXXXXXSIDRVLATRSMQPDVDMSSDTDSDVMMTGSCFPSRKGTASRRRTRSSTSNVKPGASVDIAWPQQDKSKLGG----WGRKKSQAAGQLVSPPDMSNMVEGRRRHPSPERKIVKNVSLQKDDWIDFATNAARS--QRHPWLVRVLSANRMSSPAKKQTRPIAAQTEQDKTRKKSKRFWRVFSRK 532

The following BLAST results are available for this feature:

BLAST of Gcaud770.t1 vs. uniprot

BLAST of Gcaud770.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QCY2_CHOCR	1.070e-30	31.33	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4768_length_2008_cov_3.137715	contig	NODE_4768_length_2008_cov_3.137715:69..1604 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1	Gcaud770.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_4768_length_2008_cov_3.137715 69..1604 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=512bp
MATPPLPPVSKGVGFSDHLIVLGSSSPAASCAPTTLPKGRVFVKRGQIAN
RQLMNDAAQSAHTALPPTQLTVQSSPPPPPPPPLRPATETRIPPEEVVLR
PPDRRRARFFADGSQPAADNLSSASASPVAAREREQSSDSDSENGTLQSA
RVSSVHVLDLDDHQLARCTRLNTKLNSLPSGGAFSFMNSSEDVDTASVAS
SSSSSSSSSSEDFHESRKLIRVDGSAKLSTASGVLDSSTDDEADDHAFSI
DGAESVDEEEAVQVRSFGRTLAQMSLQPQSQDIVTEVNSSLAPIPVACNT
TPDRARRKQSSGSKAYTMPVSRPCSSNTLQEHILNGCEGRGGGSKRRSRL
RVTFFRRGSAKNVGRAAVADDERFVDDEDVIEQRMGSFSTISCFSTRRSS
TRLRAMRSDRTEEGGSSSNCGEAQRKGGAQMVAVPEFEGRRMVKNISLQR
DDFIDFTTNGRSTSVKRSPWLTRFKSGAEDGSVSGSELGELHGTASSQRR
VKRLLRVFGRK*