Gcaud770.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud770.t1
Unique Name	Gcaud770.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	512

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4768_length_2008_cov_3.137715	contig	NODE_4768_length_2008_cov_3.137715:69..1604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud770	Gcaud770	Gracilaria caudata M_176_S67 male	gene	NODE_4768_length_2008_cov_3.137715 69..1604 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1.start1	Gcaud770.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4768_length_2008_cov_3.137715 69..71 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1.CDS1	Gcaud770.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4768_length_2008_cov_3.137715 69..1604 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1.exon1	Gcaud770.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4768_length_2008_cov_3.137715 69..1604 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1.stop1	Gcaud770.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4768_length_2008_cov_3.137715 1602..1604 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud770.t1	Gcaud770.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4768_length_2008_cov_3.137715 69..1604 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+
coding sequence from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+

mRNA sequence

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=512bp
MATPPLPPVSKGVGFSDHLIVLGSSSPAASCAPTTLPKGRVFVKRGQIAN
RQLMNDAAQSAHTALPPTQLTVQSSPPPPPPPPLRPATETRIPPEEVVLR
PPDRRRARFFADGSQPAADNLSSASASPVAAREREQSSDSDSENGTLQSA
RVSSVHVLDLDDHQLARCTRLNTKLNSLPSGGAFSFMNSSEDVDTASVAS
SSSSSSSSSSEDFHESRKLIRVDGSAKLSTASGVLDSSTDDEADDHAFSI
DGAESVDEEEAVQVRSFGRTLAQMSLQPQSQDIVTEVNSSLAPIPVACNT
TPDRARRKQSSGSKAYTMPVSRPCSSNTLQEHILNGCEGRGGGSKRRSRL
RVTFFRRGSAKNVGRAAVADDERFVDDEDVIEQRMGSFSTISCFSTRRSS
TRLRAMRSDRTEEGGSSSNCGEAQRKGGAQMVAVPEFEGRRMVKNISLQR
DDFIDFTTNGRSTSVKRSPWLTRFKSGAEDGSVSGSELGELHGTASSQRR
VKRLLRVFGRK*

spliced messenger RNA

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCCCGCCCCTACCCCCTGTTTCCAAGGGGGTGGGCTTTTCCGA
TCACCTCATCGTATTAGGTTCTTCTTCGCCCGCCGCATCATGCGCGCCCA
CCACGCTTCCAAAGGGGCGCGTGTTCGTTAAGCGCGGACAGATAGCCAAC
AGGCAGCTCATGAACGATGCAGCCCAGTCCGCACACACCGCTCTCCCTCC
AACACAACTCACTGTGCAATCCTCCccgccacccccaccgccgccgccgt
tgcggcctgccaccgAGACTCGAATCCCGCCCGAAGAAGTGGTTTTACGT
CCCCCAGATCGTCGTCGTGCTCGTTTCTTCGCTGACGGCTCCCAGCCTGC
TGCCGACAACCTCTCCTCTGCTTCTGCTTCCCCGGTTGCGGCTCGTGAGC
GCGAACAGTCTTCCGACTCGGACAGTGAGAATGGCACGCTGCAGTCTGCC
AGGGTTTCCAGTGTGCATGTGCTCGATTTGGACGACCATCAACTAGCCAG
ATGTACTCGTCTGAACACCAAACTCAATTCTTTGCCTTCTGGTGGTGCCT
TTTCGTTTATGAACTCCTCGGAAGATGTGGACACCGCTTCTGTCGCTtcc
tcctcctcctcttcgtcctcatcAAGCTCGGAAGATTTTCACGAATCCAG
AAAACTAATCCGGGTGGATGGCAGTGCCAAACTGTCTACGGCTTCTGGTG
TATTGGACAGCAGTACAGACGACGAGGCAGATGATCACGCGTTTAGCATC
GATGGCGCAGAGTCAGTGGACGAAGAAGAAGCTGTACAAGTACGCTCCTT
CGGTAGAACACTAGCGCAAATGTCGTTGCAACCGCAATCGCAAGACATTG
TGACCGAAGTGAATTCATCATTGGCCCCCATTCCAGTCGCATGTAATACC
ACGCCTGATCGTGCGCGTCGCAAGCAATCGAGCGGCTCTAAGGCTTATAC
CATGCCTGTTAGCAGGCCGTGCAGTTCGAACACGCTACAAGAACACATTC
TGAACGGGTGCGAAGGACGTGGTGGCGGTTCGAAACGCCGCTCTAGGCTA
AGAGTAACGTTTTTTCGACGGGGGTCGGCGAAGAACGTTGGCAGGGCGGC
GGTTGCTGATGACGAGAGATTTGTGGATGACGAAGACGTTATTGAACAAC
GCATGGGATCGTTCTCCACCATCTCGTGTTTTTCGACGAGAAGGTCGAGC
ACTCGATTACGTGCCATGCGCTCGGACCGCACGGAGGAGGGTGGTAGTAG
TAGCAACTGTGGCGAGGCGCAACGGAAGGGAGGCGCTCAGATGGTGGCGG
TGCCGGAGTTTGAGGGGAGGCGAATGGTGAAGAACATCTCGCTGCAACGC
GATGACTTTATTGACTTTACAACGAATGGCAGGAGCACGAGCGTGAAGCG
CAGCCCGTGGCTGACGCGGTTCAAGAGCGGCGCCGAGGATGGCTCGGTGT
CGGGGAGCGAGCTGGGCGAGCTGCACGGCACGGCGTCGTCGCAGCGCCGC
GTGAAGCGTCTGCTGAGGGTGTTTGGGCGCAAATAG

protein sequence of Gcaud770.t1

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=512bp
MATPPLPPVSKGVGFSDHLIVLGSSSPAASCAPTTLPKGRVFVKRGQIAN
RQLMNDAAQSAHTALPPTQLTVQSSPPPPPPPPLRPATETRIPPEEVVLR
PPDRRRARFFADGSQPAADNLSSASASPVAAREREQSSDSDSENGTLQSA
RVSSVHVLDLDDHQLARCTRLNTKLNSLPSGGAFSFMNSSEDVDTASVAS
SSSSSSSSSSEDFHESRKLIRVDGSAKLSTASGVLDSSTDDEADDHAFSI
DGAESVDEEEAVQVRSFGRTLAQMSLQPQSQDIVTEVNSSLAPIPVACNT
TPDRARRKQSSGSKAYTMPVSRPCSSNTLQEHILNGCEGRGGGSKRRSRL
RVTFFRRGSAKNVGRAAVADDERFVDDEDVIEQRMGSFSTISCFSTRRSS
TRLRAMRSDRTEEGGSSSNCGEAQRKGGAQMVAVPEFEGRRMVKNISLQR
DDFIDFTTNGRSTSVKRSPWLTRFKSGAEDGSVSGSELGELHGTASSQRR
VKRLLRVFGRK*

mRNA from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+ (Gracilaria caudata M_176_S67 male)
ATGGCCACCCCGCCCCTACCCCCTGTTTCCAAGGGGGTGGGCTTTTCCGA
TCACCTCATCGTATTAGGTTCTTCTTCGCCCGCCGCATCATGCGCGCCCA
CCACGCTTCCAAAGGGGCGCGTGTTCGTTAAGCGCGGACAGATAGCCAAC
AGGCAGCTCATGAACGATGCAGCCCAGTCCGCACACACCGCTCTCCCTCC
AACACAACTCACTGTGCAATCCTCCccgccacccccaccgccgccgccgt
tgcggcctgccaccgAGACTCGAATCCCGCCCGAAGAAGTGGTTTTACGT
CCCCCAGATCGTCGTCGTGCTCGTTTCTTCGCTGACGGCTCCCAGCCTGC
TGCCGACAACCTCTCCTCTGCTTCTGCTTCCCCGGTTGCGGCTCGTGAGC
GCGAACAGTCTTCCGACTCGGACAGTGAGAATGGCACGCTGCAGTCTGCC
AGGGTTTCCAGTGTGCATGTGCTCGATTTGGACGACCATCAACTAGCCAG
ATGTACTCGTCTGAACACCAAACTCAATTCTTTGCCTTCTGGTGGTGCCT
TTTCGTTTATGAACTCCTCGGAAGATGTGGACACCGCTTCTGTCGCTtcc
tcctcctcctcttcgtcctcatcAAGCTCGGAAGATTTTCACGAATCCAG
AAAACTAATCCGGGTGGATGGCAGTGCCAAACTGTCTACGGCTTCTGGTG
TATTGGACAGCAGTACAGACGACGAGGCAGATGATCACGCGTTTAGCATC
GATGGCGCAGAGTCAGTGGACGAAGAAGAAGCTGTACAAGTACGCTCCTT
CGGTAGAACACTAGCGCAAATGTCGTTGCAACCGCAATCGCAAGACATTG
TGACCGAAGTGAATTCATCATTGGCCCCCATTCCAGTCGCATGTAATACC
ACGCCTGATCGTGCGCGTCGCAAGCAATCGAGCGGCTCTAAGGCTTATAC
CATGCCTGTTAGCAGGCCGTGCAGTTCGAACACGCTACAAGAACACATTC
TGAACGGGTGCGAAGGACGTGGTGGCGGTTCGAAACGCCGCTCTAGGCTA
AGAGTAACGTTTTTTCGACGGGGGTCGGCGAAGAACGTTGGCAGGGCGGC
GGTTGCTGATGACGAGAGATTTGTGGATGACGAAGACGTTATTGAACAAC
GCATGGGATCGTTCTCCACCATCTCGTGTTTTTCGACGAGAAGGTCGAGC
ACTCGATTACGTGCCATGCGCTCGGACCGCACGGAGGAGGGTGGTAGTAG
TAGCAACTGTGGCGAGGCGCAACGGAAGGGAGGCGCTCAGATGGTGGCGG
TGCCGGAGTTTGAGGGGAGGCGAATGGTGAAGAACATCTCGCTGCAACGC
GATGACTTTATTGACTTTACAACGAATGGCAGGAGCACGAGCGTGAAGCG
CAGCCCGTGGCTGACGCGGTTCAAGAGCGGCGCCGAGGATGGCTCGGTGT
CGGGGAGCGAGCTGGGCGAGCTGCACGGCACGGCGTCGTCGCAGCGCCGC
GTGAAGCGTCTGCTGAGGGTGTTTGGGCGCAAATAG

Coding sequence (CDS) from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+

>Gcaud770.t1 ID=Gcaud770.t1|Name=Gcaud770.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1536bp|location=Sequence derived from alignment at NODE_4768_length_2008_cov_3.137715:69..1604+ (Gracilaria caudata M_176_S67 male)
ATGGCCACCCCGCCCCTACCCCCTGTTTCCAAGGGGGTGGGCTTTTCCGA
TCACCTCATCGTATTAGGTTCTTCTTCGCCCGCCGCATCATGCGCGCCCA
CCACGCTTCCAAAGGGGCGCGTGTTCGTTAAGCGCGGACAGATAGCCAAC
AGGCAGCTCATGAACGATGCAGCCCAGTCCGCACACACCGCTCTCCCTCC
AACACAACTCACTGTGCAATCCTCCccgccacccccaccgccgccgccgt
tgcggcctgccaccgAGACTCGAATCCCGCCCGAAGAAGTGGTTTTACGT
CCCCCAGATCGTCGTCGTGCTCGTTTCTTCGCTGACGGCTCCCAGCCTGC
TGCCGACAACCTCTCCTCTGCTTCTGCTTCCCCGGTTGCGGCTCGTGAGC
GCGAACAGTCTTCCGACTCGGACAGTGAGAATGGCACGCTGCAGTCTGCC
AGGGTTTCCAGTGTGCATGTGCTCGATTTGGACGACCATCAACTAGCCAG
ATGTACTCGTCTGAACACCAAACTCAATTCTTTGCCTTCTGGTGGTGCCT
TTTCGTTTATGAACTCCTCGGAAGATGTGGACACCGCTTCTGTCGCTtcc
tcctcctcctcttcgtcctcatcAAGCTCGGAAGATTTTCACGAATCCAG
AAAACTAATCCGGGTGGATGGCAGTGCCAAACTGTCTACGGCTTCTGGTG
TATTGGACAGCAGTACAGACGACGAGGCAGATGATCACGCGTTTAGCATC
GATGGCGCAGAGTCAGTGGACGAAGAAGAAGCTGTACAAGTACGCTCCTT
CGGTAGAACACTAGCGCAAATGTCGTTGCAACCGCAATCGCAAGACATTG
TGACCGAAGTGAATTCATCATTGGCCCCCATTCCAGTCGCATGTAATACC
ACGCCTGATCGTGCGCGTCGCAAGCAATCGAGCGGCTCTAAGGCTTATAC
CATGCCTGTTAGCAGGCCGTGCAGTTCGAACACGCTACAAGAACACATTC
TGAACGGGTGCGAAGGACGTGGTGGCGGTTCGAAACGCCGCTCTAGGCTA
AGAGTAACGTTTTTTCGACGGGGGTCGGCGAAGAACGTTGGCAGGGCGGC
GGTTGCTGATGACGAGAGATTTGTGGATGACGAAGACGTTATTGAACAAC
GCATGGGATCGTTCTCCACCATCTCGTGTTTTTCGACGAGAAGGTCGAGC
ACTCGATTACGTGCCATGCGCTCGGACCGCACGGAGGAGGGTGGTAGTAG
TAGCAACTGTGGCGAGGCGCAACGGAAGGGAGGCGCTCAGATGGTGGCGG
TGCCGGAGTTTGAGGGGAGGCGAATGGTGAAGAACATCTCGCTGCAACGC
GATGACTTTATTGACTTTACAACGAATGGCAGGAGCACGAGCGTGAAGCG
CAGCCCGTGGCTGACGCGGTTCAAGAGCGGCGCCGAGGATGGCTCGGTGT
CGGGGAGCGAGCTGGGCGAGCTGCACGGCACGGCGTCGTCGCAGCGCCGC
GTGAAGCGTCTGCTGAGGGTGTTTGGGCGCAAATAG