Gcaud1791.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1791.t1
Unique Name	Gcaud1791.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	511

Homology

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BLAST of Gcaud1791.t1 vs. uniprot
Match: A0A2V3IRP8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRP8_9FLOR)

HSP 1 Score: 479 bits (1234), Expect = 6.410e-152
Identity = 295/511 (57.73%), Postives = 351/511 (68.69%), Query Frame = 0

Query:    9 FKRSCAARYAPLVQLSATQHCDAAVRTA-SSHRSVLSLLSEHLPAANRPPLRLLTPAQLKETSSRSFARTLLDGARDADRHLAAVAAALKLRLEQLTVAGRHERFVLPLLNVVAVWVCEPQIAQAVSVSSMREAPTVLLVARPTAQDNAALQSVRESLASHPAPLLVLRLNEQKDAQQTDTEHSEHSAVAVAAQLDSSAR---------------AVLNEQLNDAVAAADSARRAVRSSFRSWFSTSSASTPAMPTVDSKPPPRAPIDDASSSSATDAAQLAPNTLAAAMRTLADLALMAGRYTDASDAYRMLAAEVRTFSSTAAIHHASALELGAISLALIDGSNAAIGSALESAVLRYVDANRPELAARAALRAVDFCLAAGYPDSAAGVLVRAIGALRPGISDTT-PPLVDAVLAVLCAVCTEAFVTLKHPRRASRFAFFAAIRFARLRYFAAXXXXXXAIDGSALQRAAIRHHVQYWMGEAALSAGNPVSAVRHLSSVLVEAKKSSQ 502
            FKR  AAR+AP +QL AT HCDAAVRTA ++HR++ SLLS +LP +  PPLR+LT   +  T  R+  R LLD  RD    LA ++ AL  RLE  T+A  H+ F LPLL VVAVWVCEP I+ A++     + P VLLVARPTAQD  ALQ V++SLASHPAP+LVLR                                              A LN +LNDA  AA+  RR+ R+SFRSWFSTS+ ST    T D      +  D  +++S +DA +LAPNT+A AMR LADLALMAGRYTDA +AYR LAAEVR+ SS A++HHASALE+ AISLAL+DGSN+AIGSA ESA++RY DANRPELAARAALRAV FCLAAG+PDSAAGVLVRAI  LRP  + T+ PPL+D VLA LCA C +AF  LKH RRASRFAFFAA+ FARLR+F A      A+D SALQR +IRHHVQYWMGEAALS+  PV+AVR+ SSVL EA+ S Q
Sbjct:   22 FKRRAAARHAPSLQLRATLHCDAAVRTADATHRNLRSLLSAYLPNSAAPPLRVLTAEHVAITPPRALPRALLDSLRDPPSRLAKLSDALLDRLESATLALSHDIFALPLLTVVAVWVCEPDISAALAAFPTHQPPLVLLVARPTAQDAHALQRVQQSLASHPAPVLVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLNLRLNDAALAANRIRRSTRTSFRSWFSTSTTSTXR--TSDDSHLSVSTSDLTAATSTSDATRLAPNTVAFAMRQLADLALMAGRYTDACEAYRNLAAEVRSLSSAASVHHASALEMEAISLALLDGSNSAIGSAFESAIVRYSDANRPELAARAALRAVHFCLAAGFPDSAAGVLVRAITLLRPSEAQTSAPPLLDVVLATLCAACADAFTRLKHMRRASRFAFFAAVSFARLRHFVAAATVATAVDASALQRPSIRHHVQYWMGEAALSSSKPVAAVRNFSSVLAEAQPSPQ 530

The following BLAST results are available for this feature:

BLAST of Gcaud1791.t1 vs. uniprot

BLAST of Gcaud1791.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IRP8_9FLOR	6.410e-152	57.73	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024420	TRAPP III complex, Trs85	PFAM	PF12739	TRAPPC-Trs85	coord: 213..448 e-value: 1.6E-16 score: 60.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..270
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 461..510
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 423..441
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 442..460
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..402
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 403..422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:14284..15863 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1	Gcaud1791.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_472_length_24489_cov_3.453562 14284..15863 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=511bp
MGDDAARHFKRSCAARYAPLVQLSATQHCDAAVRTASSHRSVLSLLSEHL
PAANRPPLRLLTPAQLKETSSRSFARTLLDGARDADRHLAAVAAALKLRL
EQLTVAGRHERFVLPLLNVVAVWVCEPQIAQAVSVSSMREAPTVLLVARP
TAQDNAALQSVRESLASHPAPLLVLRLNEQKDAQQTDTEHSEHSAVAVAA
QLDSSARAVLNEQLNDAVAAADSARRAVRSSFRSWFSTSSASTPAMPTVD
SKPPPRAPIDDASSSSATDAAQLAPNTLAAAMRTLADLALMAGRYTDASD
AYRMLAAEVRTFSSTAAIHHASALELGAISLALIDGSNAAIGSALESAVL
RYVDANRPELAARAALRAVDFCLAAGYPDSAAGVLVRAIGALRPGISDTT
PPLVDAVLAVLCAVCTEAFVTLKHPRRASRFAFFAAIRFARLRYFAAAAA
AAAAIDGSALQRAAIRHHVQYWMGEAALSAGNPVSAVRHLSSVLVEAKKS
SQPVEDWCCS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024420	TRAPP_III_complex_Trs85