Gcaud1791.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1791.t1
Unique Name	Gcaud1791.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:14284..15863 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1791	Gcaud1791	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 14284..18879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1	Gcaud1791.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 14284..15863 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1.start1	Gcaud1791.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 14284..14286 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1.CDS1	Gcaud1791.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 14284..15791 +
Gcaud1791.t1.CDS2	Gcaud1791.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 15839..15863 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1.exon1	Gcaud1791.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 14284..15791 +
Gcaud1791.t1.exon2	Gcaud1791.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 15839..15863 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1.intron1	Gcaud1791.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_472_length_24489_cov_3.453562 15792..15838 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1791.t1.stop1	Gcaud1791.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 15861..15863 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+

mRNA sequence

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp
MGDDAARHFKRSCAARYAPLVQLSATQHCDAAVRTASSHRSVLSLLSEHL
PAANRPPLRLLTPAQLKETSSRSFARTLLDGARDADRHLAAVAAALKLRL
EQLTVAGRHERFVLPLLNVVAVWVCEPQIAQAVSVSSMREAPTVLLVARP
TAQDNAALQSVRESLASHPAPLLVLRLNEQKDAQQTDTEHSEHSAVAVAA
QLDSSARAVLNEQLNDAVAAADSARRAVRSSFRSWFSTSSASTPAMPTVD
SKPPPRAPIDDASSSSATDAAQLAPNTLAAAMRTLADLALMAGRYTDASD
AYRMLAAEVRTFSSTAAIHHASALELGAISLALIDGSNAAIGSALESAVL
RYVDANRPELAARAALRAVDFCLAAGYPDSAAGVLVRAIGALRPGISDTT
PPLVDAVLAVLCAVCTEAFVTLKHPRRASRFAFFAAIRFARLRYFAAAAA
AAAAIDGSALQRAAIRHHVQYWMGEAALSAGNPVSAVRHLSSVLVEAKKS
SQPVEDWCCS*

spliced messenger RNA

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGACGCCGCGCGCCACTTCAAGCGGAGTTGCGCCGCCAGGTA
CGCGCCGCTGGTGCAACTCAGCGCCACGCAGCATTGCGACGCCGCCGTGC
GCACCGCCAGCAGCCATCGCAGCGTGCTGTCGTTGTTGAGCGAGCATCTG
CCCGCCGCCAATCGCCCGCCGTTGCGATTGCTCACGCCCGCGCAGCTCAA
GGAGACGTCGTCGCGATCGTTTGCGAGGACGCTTTTGGACGGCGCTAGGG
ATGCTGATCGCCATCTTGCCGCTGTTGCGGCCGCTTTGAAGCTGCGATTG
GAACAGCTTACCGTCGCGGGTAGACATGAGCGCTTTGTGCTGCCGTTGTT
GAATGTCGTCGCTGTGTGGGTTTGTGAGCCGCAAATTGCGCAGGCCGTTT
CTGTGTCGTCTATGCGAGAGGCGCCCACTGTGCTGTTGGTTGCAAGACCC
ACTGCGCAGGATAACGCCGCGTTGCAAAGCGTCAGAGAGTCGCTTGCCTC
ACATCCGGCGCCGTTACTCGTGTTGCGACTGAACGAACAGAAAGATGCGC
AGCAAACAGACACCGAGCACTCAGAGCATTCTGCCGTCGCCGTCGCCGCA
CAACTCGACTCGAGCGCGCGTGCAGTGCTCAATGAGCAGTTAAACGACGC
CGTAGCTGCTGCTGATAGCGCGCGAAGGGCAGTTCGATCTTCGTTTCGAT
CGTGGTTCTCCACCTCTTCTGCGTCTACGCCGGCCATGCCTACTGTCGAC
TCAAAGCCTCCGCCACGGGCGCCAATTGACGACGCCTCTTCTTCTTCCGC
TACCGATGCGGCGCAACTGGCGCCGAATACGCTTGCGGCTGCCATGCGTA
CACTGGCCGATCTGGCGCTCATGGCGGGGCGATACACCGATGCGAGCGAT
GCGTACCGAATGCTGGCTGCGGAGGTGAGAACGTTTTCCTCCACTGCGGC
TATTCACCATGCCTCCGCGCTGGAACTAGGTGCCATTTCTCTCGCTTTGA
TAGATGGGAGCAATGCCGCCATTGGCTCTGCTCTGGAGTCAGCTGTGTTG
AGATATGTTGATGCCAATCGTCCCGAGCTCGCTGCCAGGGCGGCGTTACG
AGCGGTTGACTTTTGTCTGGCCGCTGGATATCCGGATAGTGCCGCTGGCG
TTCTTGTTCGTGCGATTGGGGCGTTACGACCTGGCATCTCGGATACGACG
CCGCCGTTGGTGGATGCTGTGTTGGCGGTTTTGTGTGCGGTTTGCACCGA
AGCGTTTGTTACCCTCAAACATCCGCGTCGCGCGTCACGCTTTGCGTTTT
TTGCGGCGATTCGCTTTGCGAGGTTGCGTTACTTtgctgcggccgctgcg
gctgctgcagctattgatggctctgctTTGCAACGTGCGGCGATTCGGCA
TCATGTGCAGTACTGGATGGGAGAGGCTGCGTTGTCGGCTGGGAATCCTG
TGTCGGCGGTTCGACATCTTTCGTCGGTGCTGGTGGAGGCGAAGAAATCG
TCTCAACcCGTTGAAGATTGGTGCTGTTCATAA

protein sequence of Gcaud1791.t1

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=511bp
MGDDAARHFKRSCAARYAPLVQLSATQHCDAAVRTASSHRSVLSLLSEHL
PAANRPPLRLLTPAQLKETSSRSFARTLLDGARDADRHLAAVAAALKLRL
EQLTVAGRHERFVLPLLNVVAVWVCEPQIAQAVSVSSMREAPTVLLVARP
TAQDNAALQSVRESLASHPAPLLVLRLNEQKDAQQTDTEHSEHSAVAVAA
QLDSSARAVLNEQLNDAVAAADSARRAVRSSFRSWFSTSSASTPAMPTVD
SKPPPRAPIDDASSSSATDAAQLAPNTLAAAMRTLADLALMAGRYTDASD
AYRMLAAEVRTFSSTAAIHHASALELGAISLALIDGSNAAIGSALESAVL
RYVDANRPELAARAALRAVDFCLAAGYPDSAAGVLVRAIGALRPGISDTT
PPLVDAVLAVLCAVCTEAFVTLKHPRRASRFAFFAAIRFARLRYFAAAAA
AAAAIDGSALQRAAIRHHVQYWMGEAALSAGNPVSAVRHLSSVLVEAKKS
SQPVEDWCCS*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1580bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+ (Gracilaria caudata M_176_S67 male)
ATGGGCGACGACGCCGCGCGCCACTTCAAGCGGAGTTGCGCCGCCAGGTA
CGCGCCGCTGGTGCAACTCAGCGCCACGCAGCATTGCGACGCCGCCGTGC
GCACCGCCAGCAGCCATCGCAGCGTGCTGTCGTTGTTGAGCGAGCATCTG
CCCGCCGCCAATCGCCCGCCGTTGCGATTGCTCACGCCCGCGCAGCTCAA
GGAGACGTCGTCGCGATCGTTTGCGAGGACGCTTTTGGACGGCGCTAGGG
ATGCTGATCGCCATCTTGCCGCTGTTGCGGCCGCTTTGAAGCTGCGATTG
GAACAGCTTACCGTCGCGGGTAGACATGAGCGCTTTGTGCTGCCGTTGTT
GAATGTCGTCGCTGTGTGGGTTTGTGAGCCGCAAATTGCGCAGGCCGTTT
CTGTGTCGTCTATGCGAGAGGCGCCCACTGTGCTGTTGGTTGCAAGACCC
ACTGCGCAGGATAACGCCGCGTTGCAAAGCGTCAGAGAGTCGCTTGCCTC
ACATCCGGCGCCGTTACTCGTGTTGCGACTGAACGAACAGAAAGATGCGC
AGCAAACAGACACCGAGCACTCAGAGCATTCTGCCGTCGCCGTCGCCGCA
CAACTCGACTCGAGCGCGCGTGCAGTGCTCAATGAGCAGTTAAACGACGC
CGTAGCTGCTGCTGATAGCGCGCGAAGGGCAGTTCGATCTTCGTTTCGAT
CGTGGTTCTCCACCTCTTCTGCGTCTACGCCGGCCATGCCTACTGTCGAC
TCAAAGCCTCCGCCACGGGCGCCAATTGACGACGCCTCTTCTTCTTCCGC
TACCGATGCGGCGCAACTGGCGCCGAATACGCTTGCGGCTGCCATGCGTA
CACTGGCCGATCTGGCGCTCATGGCGGGGCGATACACCGATGCGAGCGAT
GCGTACCGAATGCTGGCTGCGGAGGTGAGAACGTTTTCCTCCACTGCGGC
TATTCACCATGCCTCCGCGCTGGAACTAGGTGCCATTTCTCTCGCTTTGA
TAGATGGGAGCAATGCCGCCATTGGCTCTGCTCTGGAGTCAGCTGTGTTG
AGATATGTTGATGCCAATCGTCCCGAGCTCGCTGCCAGGGCGGCGTTACG
AGCGGTTGACTTTTGTCTGGCCGCTGGATATCCGGATAGTGCCGCTGGCG
TTCTTGTTCGTGCGATTGGGGCGTTACGACCTGGCATCTCGGATACGACG
CCGCCGTTGGTGGATGCTGTGTTGGCGGTTTTGTGTGCGGTTTGCACCGA
AGCGTTTGTTACCCTCAAACATCCGCGTCGCGCGTCACGCTTTGCGTTTT
TTGCGGCGATTCGCTTTGCGAGGTTGCGTTACTTtgctgcggccgctgcg
gctgctgcagctattgatggctctgctTTGCAACGTGCGGCGATTCGGCA
TCATGTGCAGTACTGGATGGGAGAGGCTGCGTTGTCGGCTGGGAATCCTG
TGTCGGCGGTTCGACATCTTTCGTCGGTGCTGGTGGAGGCGAAGAAATCG
TCTCAACcgtgcgaggtcgacgtgcatgcgtctgtggtgcgtgcgtTTTT
ACGAGCGTTGAAGATTGGTGCTGTTCATAA

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+

>Gcaud1791.t1 ID=Gcaud1791.t1|Name=Gcaud1791.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1533bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:14284..15863+ (Gracilaria caudata M_176_S67 male)
ATGGGCGACGACGCCGCGCGCCACTTCAAGCGGAGTTGCGCCGCCAGGTA
CGCGCCGCTGGTGCAACTCAGCGCCACGCAGCATTGCGACGCCGCCGTGC
GCACCGCCAGCAGCCATCGCAGCGTGCTGTCGTTGTTGAGCGAGCATCTG
CCCGCCGCCAATCGCCCGCCGTTGCGATTGCTCACGCCCGCGCAGCTCAA
GGAGACGTCGTCGCGATCGTTTGCGAGGACGCTTTTGGACGGCGCTAGGG
ATGCTGATCGCCATCTTGCCGCTGTTGCGGCCGCTTTGAAGCTGCGATTG
GAACAGCTTACCGTCGCGGGTAGACATGAGCGCTTTGTGCTGCCGTTGTT
GAATGTCGTCGCTGTGTGGGTTTGTGAGCCGCAAATTGCGCAGGCCGTTT
CTGTGTCGTCTATGCGAGAGGCGCCCACTGTGCTGTTGGTTGCAAGACCC
ACTGCGCAGGATAACGCCGCGTTGCAAAGCGTCAGAGAGTCGCTTGCCTC
ACATCCGGCGCCGTTACTCGTGTTGCGACTGAACGAACAGAAAGATGCGC
AGCAAACAGACACCGAGCACTCAGAGCATTCTGCCGTCGCCGTCGCCGCA
CAACTCGACTCGAGCGCGCGTGCAGTGCTCAATGAGCAGTTAAACGACGC
CGTAGCTGCTGCTGATAGCGCGCGAAGGGCAGTTCGATCTTCGTTTCGAT
CGTGGTTCTCCACCTCTTCTGCGTCTACGCCGGCCATGCCTACTGTCGAC
TCAAAGCCTCCGCCACGGGCGCCAATTGACGACGCCTCTTCTTCTTCCGC
TACCGATGCGGCGCAACTGGCGCCGAATACGCTTGCGGCTGCCATGCGTA
CACTGGCCGATCTGGCGCTCATGGCGGGGCGATACACCGATGCGAGCGAT
GCGTACCGAATGCTGGCTGCGGAGGTGAGAACGTTTTCCTCCACTGCGGC
TATTCACCATGCCTCCGCGCTGGAACTAGGTGCCATTTCTCTCGCTTTGA
TAGATGGGAGCAATGCCGCCATTGGCTCTGCTCTGGAGTCAGCTGTGTTG
AGATATGTTGATGCCAATCGTCCCGAGCTCGCTGCCAGGGCGGCGTTACG
AGCGGTTGACTTTTGTCTGGCCGCTGGATATCCGGATAGTGCCGCTGGCG
TTCTTGTTCGTGCGATTGGGGCGTTACGACCTGGCATCTCGGATACGACG
CCGCCGTTGGTGGATGCTGTGTTGGCGGTTTTGTGTGCGGTTTGCACCGA
AGCGTTTGTTACCCTCAAACATCCGCGTCGCGCGTCACGCTTTGCGTTTT
TTGCGGCGATTCGCTTTGCGAGGTTGCGTTACTTtgctgcggccgctgcg
gctgctgcagctattgatggctctgctTTGCAACGTGCGGCGATTCGGCA
TCATGTGCAGTACTGGATGGGAGAGGCTGCGTTGTCGGCTGGGAATCCTG
TGTCGGCGGTTCGACATCTTTCGTCGGTGCTGGTGGAGGCGAAGAAATCG
TCTCAACcCGTTGAAGATTGGTGCTGTTCATAA