Gcaud1790.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1790.t1
Unique NameGcaud1790.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:12647..14092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707300.1
Preferred namePRK
PFAMsPRK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00855
KEGG ReactionR01523
KEGG Pathwayko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166
GOsGO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008655,GO:0008974,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034404,GO:0034641,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043174,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046983,GO:0048046,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097718,GO:0098542,GO:0099080,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue2.41e-183
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota
EC2.7.1.19
DescriptionUMP salvage
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1790Gcaud1790Gracilaria caudata M_176_S67 malegeneNODE_472_length_24489_cov_3.453562 12647..14092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1Gcaud1790.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_472_length_24489_cov_3.453562 12647..14092 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1.start1Gcaud1790.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_472_length_24489_cov_3.453562 12647..12649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1.CDS1Gcaud1790.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 12647..13656 +
Gcaud1790.t1.CDS2Gcaud1790.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 13832..13889 +
Gcaud1790.t1.CDS3Gcaud1790.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 14045..14092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1.exon1Gcaud1790.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 12647..13656 +
Gcaud1790.t1.exon2Gcaud1790.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 13832..13889 +
Gcaud1790.t1.exon3Gcaud1790.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 14045..14092 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1.intron1Gcaud1790.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_472_length_24489_cov_3.453562 13657..13831 +
Gcaud1790.t1.intron2Gcaud1790.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_472_length_24489_cov_3.453562 13890..14044 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1790.t1.stop1Gcaud1790.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_472_length_24489_cov_3.453562 14090..14092 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp
MGRKNISRPVIIGVAADSGCGKSTFLRRVTSIFGTNVSKAHTPVGDFISV
ICLDDYHTHDRKGRREAKVTALDERANNFDLMASQVAALKEGKSIMKPIY
NHETGEIDPPELIEPNHVIVIEGLHPMYDSRVRELLDFTVYLDLADEVKI
AWKIQRDMAERGHTLDNILASIESRKPDFERFVDPQKKNCDVVMEILPTQ
LIPDDTERKVLRVRLLQDEGNKMLDPVFLYDEGSTIDWVPCGRKLTCSYP
GIKFHYGPDTYYDKPVSVFEVDGGFEKLEEMVYVETHIERSGTKFFGEIT
QSLLRNPNAPGSTNGTGLVQVLMAMMMRNVYEKITGSFGKKCDGRGDVVG
CLSASKGTAAVGSYPVIVVII*
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spliced messenger RNA

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGTTTTGGTAAAAAGTGTGATGGTCGTGGTGACGTTGTCGGC
TGTCTGTCGGCATCGAAGGGGACAGCGGCTGTCGGCAGTTATCCCGTAAT
TGTGGTTATTATTTAA
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protein sequence of Gcaud1790.t1

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=372bp
MGRKNISRPVIIGVAADSGCGKSTFLRRVTSIFGTNVSKAHTPVGDFISV
ICLDDYHTHDRKGRREAKVTALDERANNFDLMASQVAALKEGKSIMKPIY
NHETGEIDPPELIEPNHVIVIEGLHPMYDSRVRELLDFTVYLDLADEVKI
AWKIQRDMAERGHTLDNILASIESRKPDFERFVDPQKKNCDVVMEILPTQ
LIPDDTERKVLRVRLLQDEGNKMLDPVFLYDEGSTIDWVPCGRKLTCSYP
GIKFHYGPDTYYDKPVSVFEVDGGFEKLEEMVYVETHIERSGTKFFGEIT
QSLLRNPNAPGSTNGTGLVQVLMAMMMRNVYEKITGSFGKKCDGRGDVVG
CLSASKGTAAVGSYPVIVVII*
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mRNA from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGGTCTGTGGCGGTTTCTAGCAGCTGAGAGCGGCCGTGAGGT
GTGTGTGTGAGATGTTGTGCGGGCTGCTGTACGAGCTGCGGAGGCTTGCA
GGGGCTGGTGGCGTTGAGGAAAGCGTGGATTGGGGGCGGACGGGGCTCTC
TGTGAGGCAATAGTCTTTTATTTTGCTCGAGCCAGTTTTGGTAAAAAGTG
TGATGGTCGTGGTGACGTTGTCGGCTGTCTGTCGGCATCGAAGGTAAGCT
CCTCACTACACTTCACCGCCTCCGCCTCGTGCTGCGACAGTACAGTAGTC
GGAAAAGCAAAAACTGCGGCACTCGTCACGTTCCCCCACGgggaattgaa
ccccggcctcctgagtgagagtcagaaatcctaaccactagaccaTAGGG
GACAGCGGCTGTCGGCAGTTATCCCGTAATTGTGGTTATTATTTAA
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Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1116bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGTTTTGGTAAAAAGTGTGATGGTCGTGGTGACGTTGTCGGC
TGTCTGTCGGCATCGAAGGGGACAGCGGCTGTCGGCAGTTATCCCGTAAT
TGTGGTTATTATTTAA
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