Gcaud1790.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1790.t1
Unique Name	Gcaud1790.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	372

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:12647..14092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707300.1
Preferred name	PRK
PFAMs	PRK
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K00855
KEGG Reaction	R01523
KEGG Pathway	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00166
GOs	GO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008655,GO:0008974,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034404,GO:0034641,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043174,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046983,GO:0048046,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097718,GO:0098542,GO:0099080,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	2.41e-183
EggNOG OGs	COG0572@1\|root,KOG4203@2759\|Eukaryota
EC	2.7.1.19
Description	UMP salvage
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1790	Gcaud1790	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 12647..14092 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1	Gcaud1790.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 12647..14092 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1.start1	Gcaud1790.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 12647..12649 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1.CDS1	Gcaud1790.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 12647..13656 +
Gcaud1790.t1.CDS2	Gcaud1790.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 13832..13889 +
Gcaud1790.t1.CDS3	Gcaud1790.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 14045..14092 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1.exon1	Gcaud1790.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 12647..13656 +
Gcaud1790.t1.exon2	Gcaud1790.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 13832..13889 +
Gcaud1790.t1.exon3	Gcaud1790.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 14045..14092 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1.intron1	Gcaud1790.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_472_length_24489_cov_3.453562 13657..13831 +
Gcaud1790.t1.intron2	Gcaud1790.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_472_length_24489_cov_3.453562 13890..14044 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1790.t1.stop1	Gcaud1790.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 14090..14092 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+

mRNA sequence

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp
MGRKNISRPVIIGVAADSGCGKSTFLRRVTSIFGTNVSKAHTPVGDFISV
ICLDDYHTHDRKGRREAKVTALDERANNFDLMASQVAALKEGKSIMKPIY
NHETGEIDPPELIEPNHVIVIEGLHPMYDSRVRELLDFTVYLDLADEVKI
AWKIQRDMAERGHTLDNILASIESRKPDFERFVDPQKKNCDVVMEILPTQ
LIPDDTERKVLRVRLLQDEGNKMLDPVFLYDEGSTIDWVPCGRKLTCSYP
GIKFHYGPDTYYDKPVSVFEVDGGFEKLEEMVYVETHIERSGTKFFGEIT
QSLLRNPNAPGSTNGTGLVQVLMAMMMRNVYEKITGSFGKKCDGRGDVVG
CLSASKGTAAVGSYPVIVVII*

spliced messenger RNA

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGTTTTGGTAAAAAGTGTGATGGTCGTGGTGACGTTGTCGGC
TGTCTGTCGGCATCGAAGGGGACAGCGGCTGTCGGCAGTTATCCCGTAAT
TGTGGTTATTATTTAA

protein sequence of Gcaud1790.t1

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=372bp
MGRKNISRPVIIGVAADSGCGKSTFLRRVTSIFGTNVSKAHTPVGDFISV
ICLDDYHTHDRKGRREAKVTALDERANNFDLMASQVAALKEGKSIMKPIY
NHETGEIDPPELIEPNHVIVIEGLHPMYDSRVRELLDFTVYLDLADEVKI
AWKIQRDMAERGHTLDNILASIESRKPDFERFVDPQKKNCDVVMEILPTQ
LIPDDTERKVLRVRLLQDEGNKMLDPVFLYDEGSTIDWVPCGRKLTCSYP
GIKFHYGPDTYYDKPVSVFEVDGGFEKLEEMVYVETHIERSGTKFFGEIT
QSLLRNPNAPGSTNGTGLVQVLMAMMMRNVYEKITGSFGKKCDGRGDVVG
CLSASKGTAAVGSYPVIVVII*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGGTCTGTGGCGGTTTCTAGCAGCTGAGAGCGGCCGTGAGGT
GTGTGTGTGAGATGTTGTGCGGGCTGCTGTACGAGCTGCGGAGGCTTGCA
GGGGCTGGTGGCGTTGAGGAAAGCGTGGATTGGGGGCGGACGGGGCTCTC
TGTGAGGCAATAGTCTTTTATTTTGCTCGAGCCAGTTTTGGTAAAAAGTG
TGATGGTCGTGGTGACGTTGTCGGCTGTCTGTCGGCATCGAAGGTAAGCT
CCTCACTACACTTCACCGCCTCCGCCTCGTGCTGCGACAGTACAGTAGTC
GGAAAAGCAAAAACTGCGGCACTCGTCACGTTCCCCCACGgggaattgaa
ccccggcctcctgagtgagagtcagaaatcctaaccactagaccaTAGGG
GACAGCGGCTGTCGGCAGTTATCCCGTAATTGTGGTTATTATTTAA

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+

>Gcaud1790.t1 ID=Gcaud1790.t1|Name=Gcaud1790.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1116bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:12647..14092+ (Gracilaria caudata M_176_S67 male)
ATGGGCAGGAAGAACATCTCCCGTCCGGTCATCATTGGCGTGGCGGCCGA
TTCGGGCTGTGGGAAGTCCACCTTTTTGAGGAGAGTTACCAGCATCTTTG
GCACCAATGTGAGCAAGGCGCACACACCGGTGGGAGACTTTATCTCCGTG
ATCTGTCTGGATGACTATCACACGCACGATAGAAAGGGGCGAAGGGAGGC
AAAGGTCACTGCGTTGGATGAGCGTGCTAATAACTTTGATTTGATGGCGA
GTCAGGTGGCCGCGTTGAAGGAGGGAAAGAGTATCATGAAGCCTATATAC
AACCACGAGACCGGCGAGATTGACCCACCGGAGCTGATTGAACCTAATCA
CGTGATTGTGATTGAGGGGCTCCATCCCATGTATGACTCGCGCGTACGCG
AACTGCTGGACTTTACCGTGTATCTTGACCTCGCCGATGAGGTGAAGATC
GCGTGGAAGATTCAGAGAGATATGGCCGAACGTGGACATACGTTGGATAA
CATTCTGGCCAGTATCGAGTCGAGAAAGCCCGATTTCGAACGCTTTGTGG
ACCCGCAGAAGAAGAACTGTGACGTGGTGATGGAGATCCTGCCCACGCAG
TTGATCCCGGATGACACGGAGAGAAAGGTGTTGCGCGTTCGACTGCTACA
GGATGAGGGTAACAAGATGTTGGACCCGGTGTTCTTGTATGACGAGGGTT
CCACCATTGACTGGGTGCCGTGCGGAAGGAAGCTGACTTGCTCTTACCCG
GGCATCAAGTTCCATTACGGACCGGATACGTACTACGATAAGCCTGTGTC
GGTGTTTGAGGTGGACGGTGGATTTGAGAAGCTGGAGGAGATGGTGTACG
TCGAGACGCACATTGAGCGTTCTGGAACCAAGTTCTTTGGCGAGATTACG
CAATCCTTGCTGCGTAACCCGAATGCGCCGGGCTCCACGAACGGCACCGG
GCTGGTGCAGGTGCTGATGGCCATGATGATGCGGAACGTGTACGAGAAGA
TCACTGGGAGTTTTGGTAAAAAGTGTGATGGTCGTGGTGACGTTGTCGGC
TGTCTGTCGGCATCGAAGGGGACAGCGGCTGTCGGCAGTTATCCCGTAAT
TGTGGTTATTATTTAA