Gcaud1794.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1794.t1
Unique Name	Gcaud1794.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:21920..24058 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1794	Gcaud1794	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 21920..24058 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1794.t1.stop1	Gcaud1794.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 21920..21922 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1794.t1.CDS1	Gcaud1794.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 21920..24058 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1794.t1.exon1	Gcaud1794.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 21920..24058 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1794.t1.start1	Gcaud1794.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 24056..24058 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1794.t1	Gcaud1794.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 21920..24058 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:21920..24058-
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:21920..24058-

mRNA sequence

>Gcaud1794.t1 ID=Gcaud1794.t1|Name=Gcaud1794.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=713bp
MITQPLNVDAATTITTTTTTTRDDLNSFPLLNLDTTTNLSPLPHLPPTDA
KQPCHFDAVAIDNFVNEHASTCTPASATLHIQLDSDDEQPILPAVNLDEF
ANGTEHHAHAHPAIPSVHDILACNATSLAHDNGVVPTCEPMLNDGSLLLK
EHLMACGTHNTYGDLDEENGMAHLLLDAPITDTATPQRRLDSVEDSTAEQ
QHSKVQGARTGDDDMGPVLNPHMQDVSHVISYIYSQQALNDSDGALLMDM
VTSGATGEELKRWCVKFDVQDLCKQHGVELNVENSIKFTQLFRRGWKFDS
DAHTTRRAVAIPATPPATPPAAPPAAPPAASPAAQPSAESIAPPTEPTAQ
SPVETLCQNAAARSNCEASAVTESADIEGLLTLPPSEADEDEARQQELTS
CVRIDDGTHAVSQAGTAEEALLDGDALLMVQEYEPKHLSDDNMLDLLDVS
DSNARLHAMVHHMGDELGALHGAHATLADAADAAAAATVGSSTPRQCASP
SPPAQGSVLAAADAEQQEAGAELLEWGLPRAWAITSAEVTPTRTPPPEPR
CGEHKRTADVALNVSDEELLRTRPKKKRRAAKFEKPVPSRFCHVCSRTPK
NVRLAVCARIREGTCRKVICEKCFAKYAYGNFDAALRLTSAWLCPHCRDA
CPQRAQCRTYQRINDRLRVSRLRQESAKRGAPETPTDQPRARKRGRRGAA
SRAMGGEPHARV*

spliced messenger RNA

>Gcaud1794.t1 ID=Gcaud1794.t1|Name=Gcaud1794.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:21920..24058- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACTCAACCTTTAAACGTCGATGCCGCCACCACCATCACCACCAC
CACCACCACCACTCGGGATGACTTGAACTCATTTCCCTTGCTCAACCTCG
ACACCACCACCAATCTATCCCCGTTACCCCATCTGCCGCCCACCGACGCA
AAGCAACCCTGTCACTTCGATGCAGTCGCCATCGACAATTTTGTGAACGA
ACACGCCAGCACCTGCACGCCAGCCTCCGCCACGCTGCACATCCAGCTGG
ACAGCGACGACGAGCAACCCATTCTCCCCGCCGTCAATCTCGATGAATTT
GCCAACGGCACCGAGCACCACGCCCACGCTCACCCCGCCATTCCGTCTGT
GCACGACATCTTGGCTTGCAACGCTACGTCGCTCGCACATGACAATGGCG
TCGTGCCGACGTGTGAGCCAATGCTCAACGACGGCTCGTTGCTGTTGAAG
GAGCACTTGATGGCATGTGGCACGCATAACACGTACGGCGACCTCGACGA
AGAAAACGGCATGGCACATCTACTACTGGATGCCCCCATCACAGACACCG
CAACCCCGCAGAGAAGGCTCGACAGCGTTGAAGACAGCACCGCCGAGCAG
CAACACAGCAAGGTGCAAGGCGCACGCACTGGTGACGATGACATGGGACC
TGTGTTGAATCCGCATATGCAAGACGTGTCACATGTCATCTCGTACATTT
ACTCGCAACAAGCGCTCAACGACAGCGACGGCGCGCTGCTCATGGACATG
GTCACATCTGGCGCCACTGGCGAGGAGCTGAAGAGGTGGTGCGTCAAGTT
CGACGTGCAGGATCTGTGCAAACAGCACGGCGTCGAGCTCAACGTCGAAA
ACAGCATCAAGTTCACGCAGCTGTTCCGACGTGGATGGAAGTTTGATAGC
GACGCGCACACCACCAGGAGAGCCGTCGCCATCCCCGCCACACCGCCAGC
CACACCGCCCGCCGCACCGCCCGCCGCACCGCCCGCCGCTTCGCCCGCCG
CGCAGCCCAGCGCGGAATCTATAGCACCGCCCACCGAGCCAACAGCGCAG
TCGCCAGTCGAGACGTTGTGTCAGAACGCCGCGGCGCGCTCCAACTGCGA
AGCCAGCGCGGTCACCGAGAGCGCCGACATCGAGGGCCTGCTGACACTGC
CGCCGTCGGAGGCGGACGAAGACGAGGCGCGCCAACAAGAGCTGACCAGC
TGCGTGCGCATCGACGACGGCACGCACGCGGTGAGTCAGGCGGGCACAGC
CGAGGAAGCGCTGCTGGACGGCGACGCGTTGCTGATGGTGCAAGAGTACG
AGCCAAAGCACCTCAGCGACGACAACATGCTCGACTTGCTGGACGTGAGC
GACTCCAACGCGCGCCTGCACGCCATGGTGCACCACATGGGCGACGAGCT
GGGCGCGCTGCACGGCGCGCACGCAACGCTCGCCGACGCCGCCGACGCCG
CCGCTGCCGCCACTGTCGGCTCCTCCACGCCGCGCCAGTGCGCCTCGCCG
TCTCCGCCGGCGCAGGGTTCGGTGTTGGCAGCAGCCGACGCGGAACAACA
AGAGGCGGGCGCGGAGCTCTTGGAGTGGGGTTTACCACGCGCATGGGCGA
TCACATCGGCCGAGGTGACGCCCACGCGCACGCCACCGCCAGAGCCGCGC
TGCGGCGAGCACAAGCGCACGGCCGACGTCGCGCTCAACGTGTCGGACGA
GGAGCTGCTACGCACGCGGCCCAAGAAGAAGCGACGCGCGGCCAAGTTCG
AGAAGCCGGTGCCGTCGCGCTTCTGTCACGTGTGCTCGCGCACGCCGAAG
AACGTGCGACTGGCGGTGTGTGCGCGCATCCGCGAGGGCACGTGCCGCAA
GGTGATCTGCGAGAAGTGCTTCGCCAAGTACGCGTACGGCAACTTCGACG
CGGCGTTGCGGCTGACGAGCGCGTGGTTGTGTCCGCATTGCCGCGACGCG
TGCCCGCAGCGCGCGCAGTGTCGCACGTATCAGCGCATCAATGACCGACT
GCGCGTGAGTCGGCTGCGTCAGGAGAGCGCCAAACGGGGCGCACCGGAGA
CGCCGACGGACCAGCCTCGCGCGCGCAAGCGCGGCAGAAGGGGTGCCGCA
TCGCGTGCCATGGGTGGCGAGCCGCACGCGCGGGTGTAA

protein sequence of Gcaud1794.t1

>Gcaud1794.t1 ID=Gcaud1794.t1|Name=Gcaud1794.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=713bp
MITQPLNVDAATTITTTTTTTRDDLNSFPLLNLDTTTNLSPLPHLPPTDA
KQPCHFDAVAIDNFVNEHASTCTPASATLHIQLDSDDEQPILPAVNLDEF
ANGTEHHAHAHPAIPSVHDILACNATSLAHDNGVVPTCEPMLNDGSLLLK
EHLMACGTHNTYGDLDEENGMAHLLLDAPITDTATPQRRLDSVEDSTAEQ
QHSKVQGARTGDDDMGPVLNPHMQDVSHVISYIYSQQALNDSDGALLMDM
VTSGATGEELKRWCVKFDVQDLCKQHGVELNVENSIKFTQLFRRGWKFDS
DAHTTRRAVAIPATPPATPPAAPPAAPPAASPAAQPSAESIAPPTEPTAQ
SPVETLCQNAAARSNCEASAVTESADIEGLLTLPPSEADEDEARQQELTS
CVRIDDGTHAVSQAGTAEEALLDGDALLMVQEYEPKHLSDDNMLDLLDVS
DSNARLHAMVHHMGDELGALHGAHATLADAADAAAAATVGSSTPRQCASP
SPPAQGSVLAAADAEQQEAGAELLEWGLPRAWAITSAEVTPTRTPPPEPR
CGEHKRTADVALNVSDEELLRTRPKKKRRAAKFEKPVPSRFCHVCSRTPK
NVRLAVCARIREGTCRKVICEKCFAKYAYGNFDAALRLTSAWLCPHCRDA
CPQRAQCRTYQRINDRLRVSRLRQESAKRGAPETPTDQPRARKRGRRGAA
SRAMGGEPHARV*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:21920..24058-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1794.t1 ID=Gcaud1794.t1|Name=Gcaud1794.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:21920..24058- (Gracilaria caudata M_176_S67 male)
ATGATCACTCAACCTTTAAACGTCGATGCCGCCACCACCATCACCACCAC
CACCACCACCACTCGGGATGACTTGAACTCATTTCCCTTGCTCAACCTCG
ACACCACCACCAATCTATCCCCGTTACCCCATCTGCCGCCCACCGACGCA
AAGCAACCCTGTCACTTCGATGCAGTCGCCATCGACAATTTTGTGAACGA
ACACGCCAGCACCTGCACGCCAGCCTCCGCCACGCTGCACATCCAGCTGG
ACAGCGACGACGAGCAACCCATTCTCCCCGCCGTCAATCTCGATGAATTT
GCCAACGGCACCGAGCACCACGCCCACGCTCACCCCGCCATTCCGTCTGT
GCACGACATCTTGGCTTGCAACGCTACGTCGCTCGCACATGACAATGGCG
TCGTGCCGACGTGTGAGCCAATGCTCAACGACGGCTCGTTGCTGTTGAAG
GAGCACTTGATGGCATGTGGCACGCATAACACGTACGGCGACCTCGACGA
AGAAAACGGCATGGCACATCTACTACTGGATGCCCCCATCACAGACACCG
CAACCCCGCAGAGAAGGCTCGACAGCGTTGAAGACAGCACCGCCGAGCAG
CAACACAGCAAGGTGCAAGGCGCACGCACTGGTGACGATGACATGGGACC
TGTGTTGAATCCGCATATGCAAGACGTGTCACATGTCATCTCGTACATTT
ACTCGCAACAAGCGCTCAACGACAGCGACGGCGCGCTGCTCATGGACATG
GTCACATCTGGCGCCACTGGCGAGGAGCTGAAGAGGTGGTGCGTCAAGTT
CGACGTGCAGGATCTGTGCAAACAGCACGGCGTCGAGCTCAACGTCGAAA
ACAGCATCAAGTTCACGCAGCTGTTCCGACGTGGATGGAAGTTTGATAGC
GACGCGCACACCACCAGGAGAGCCGTCGCCATCCCCGCCACACCGCCAGC
CACACCGCCCGCCGCACCGCCCGCCGCACCGCCCGCCGCTTCGCCCGCCG
CGCAGCCCAGCGCGGAATCTATAGCACCGCCCACCGAGCCAACAGCGCAG
TCGCCAGTCGAGACGTTGTGTCAGAACGCCGCGGCGCGCTCCAACTGCGA
AGCCAGCGCGGTCACCGAGAGCGCCGACATCGAGGGCCTGCTGACACTGC
CGCCGTCGGAGGCGGACGAAGACGAGGCGCGCCAACAAGAGCTGACCAGC
TGCGTGCGCATCGACGACGGCACGCACGCGGTGAGTCAGGCGGGCACAGC
CGAGGAAGCGCTGCTGGACGGCGACGCGTTGCTGATGGTGCAAGAGTACG
AGCCAAAGCACCTCAGCGACGACAACATGCTCGACTTGCTGGACGTGAGC
GACTCCAACGCGCGCCTGCACGCCATGGTGCACCACATGGGCGACGAGCT
GGGCGCGCTGCACGGCGCGCACGCAACGCTCGCCGACGCCGCCGACGCCG
CCGCTGCCGCCACTGTCGGCTCCTCCACGCCGCGCCAGTGCGCCTCGCCG
TCTCCGCCGGCGCAGGGTTCGGTGTTGGCAGCAGCCGACGCGGAACAACA
AGAGGCGGGCGCGGAGCTCTTGGAGTGGGGTTTACCACGCGCATGGGCGA
TCACATCGGCCGAGGTGACGCCCACGCGCACGCCACCGCCAGAGCCGCGC
TGCGGCGAGCACAAGCGCACGGCCGACGTCGCGCTCAACGTGTCGGACGA
GGAGCTGCTACGCACGCGGCCCAAGAAGAAGCGACGCGCGGCCAAGTTCG
AGAAGCCGGTGCCGTCGCGCTTCTGTCACGTGTGCTCGCGCACGCCGAAG
AACGTGCGACTGGCGGTGTGTGCGCGCATCCGCGAGGGCACGTGCCGCAA
GGTGATCTGCGAGAAGTGCTTCGCCAAGTACGCGTACGGCAACTTCGACG
CGGCGTTGCGGCTGACGAGCGCGTGGTTGTGTCCGCATTGCCGCGACGCG
TGCCCGCAGCGCGCGCAGTGTCGCACGTATCAGCGCATCAATGACCGACT
GCGCGTGAGTCGGCTGCGTCAGGAGAGCGCCAAACGGGGCGCACCGGAGA
CGCCGACGGACCAGCCTCGCGCGCGCAAGCGCGGCAGAAGGGGTGCCGCA
TCGCGTGCCATGGGTGGCGAGCCGCACGCGCGGGTGTAA

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:21920..24058-

>Gcaud1794.t1 ID=Gcaud1794.t1|Name=Gcaud1794.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2139bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:21920..24058- (Gracilaria caudata M_176_S67 male)
ATGATCACTCAACCTTTAAACGTCGATGCCGCCACCACCATCACCACCAC
CACCACCACCACTCGGGATGACTTGAACTCATTTCCCTTGCTCAACCTCG
ACACCACCACCAATCTATCCCCGTTACCCCATCTGCCGCCCACCGACGCA
AAGCAACCCTGTCACTTCGATGCAGTCGCCATCGACAATTTTGTGAACGA
ACACGCCAGCACCTGCACGCCAGCCTCCGCCACGCTGCACATCCAGCTGG
ACAGCGACGACGAGCAACCCATTCTCCCCGCCGTCAATCTCGATGAATTT
GCCAACGGCACCGAGCACCACGCCCACGCTCACCCCGCCATTCCGTCTGT
GCACGACATCTTGGCTTGCAACGCTACGTCGCTCGCACATGACAATGGCG
TCGTGCCGACGTGTGAGCCAATGCTCAACGACGGCTCGTTGCTGTTGAAG
GAGCACTTGATGGCATGTGGCACGCATAACACGTACGGCGACCTCGACGA
AGAAAACGGCATGGCACATCTACTACTGGATGCCCCCATCACAGACACCG
CAACCCCGCAGAGAAGGCTCGACAGCGTTGAAGACAGCACCGCCGAGCAG
CAACACAGCAAGGTGCAAGGCGCACGCACTGGTGACGATGACATGGGACC
TGTGTTGAATCCGCATATGCAAGACGTGTCACATGTCATCTCGTACATTT
ACTCGCAACAAGCGCTCAACGACAGCGACGGCGCGCTGCTCATGGACATG
GTCACATCTGGCGCCACTGGCGAGGAGCTGAAGAGGTGGTGCGTCAAGTT
CGACGTGCAGGATCTGTGCAAACAGCACGGCGTCGAGCTCAACGTCGAAA
ACAGCATCAAGTTCACGCAGCTGTTCCGACGTGGATGGAAGTTTGATAGC
GACGCGCACACCACCAGGAGAGCCGTCGCCATCCCCGCCACACCGCCAGC
CACACCGCCCGCCGCACCGCCCGCCGCACCGCCCGCCGCTTCGCCCGCCG
CGCAGCCCAGCGCGGAATCTATAGCACCGCCCACCGAGCCAACAGCGCAG
TCGCCAGTCGAGACGTTGTGTCAGAACGCCGCGGCGCGCTCCAACTGCGA
AGCCAGCGCGGTCACCGAGAGCGCCGACATCGAGGGCCTGCTGACACTGC
CGCCGTCGGAGGCGGACGAAGACGAGGCGCGCCAACAAGAGCTGACCAGC
TGCGTGCGCATCGACGACGGCACGCACGCGGTGAGTCAGGCGGGCACAGC
CGAGGAAGCGCTGCTGGACGGCGACGCGTTGCTGATGGTGCAAGAGTACG
AGCCAAAGCACCTCAGCGACGACAACATGCTCGACTTGCTGGACGTGAGC
GACTCCAACGCGCGCCTGCACGCCATGGTGCACCACATGGGCGACGAGCT
GGGCGCGCTGCACGGCGCGCACGCAACGCTCGCCGACGCCGCCGACGCCG
CCGCTGCCGCCACTGTCGGCTCCTCCACGCCGCGCCAGTGCGCCTCGCCG
TCTCCGCCGGCGCAGGGTTCGGTGTTGGCAGCAGCCGACGCGGAACAACA
AGAGGCGGGCGCGGAGCTCTTGGAGTGGGGTTTACCACGCGCATGGGCGA
TCACATCGGCCGAGGTGACGCCCACGCGCACGCCACCGCCAGAGCCGCGC
TGCGGCGAGCACAAGCGCACGGCCGACGTCGCGCTCAACGTGTCGGACGA
GGAGCTGCTACGCACGCGGCCCAAGAAGAAGCGACGCGCGGCCAAGTTCG
AGAAGCCGGTGCCGTCGCGCTTCTGTCACGTGTGCTCGCGCACGCCGAAG
AACGTGCGACTGGCGGTGTGTGCGCGCATCCGCGAGGGCACGTGCCGCAA
GGTGATCTGCGAGAAGTGCTTCGCCAAGTACGCGTACGGCAACTTCGACG
CGGCGTTGCGGCTGACGAGCGCGTGGTTGTGTCCGCATTGCCGCGACGCG
TGCCCGCAGCGCGCGCAGTGTCGCACGTATCAGCGCATCAATGACCGACT
GCGCGTGAGTCGGCTGCGTCAGGAGAGCGCCAAACGGGGCGCACCGGAGA
CGCCGACGGACCAGCCTCGCGCGCGCAAGCGCGGCAGAAGGGGTGCCGCA
TCGCGTGCCATGGGTGGCGAGCCGCACGCGCGGGTGTAA