Gcaud1788.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1788.t1
Unique NameGcaud1788.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length328
Homology
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A2V3IRQ9_9FLOR (BFN domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ9_9FLOR)

HSP 1 Score: 332 bits (852), Expect = 1.000e-111
Identity = 159/226 (70.35%), Postives = 195/226 (86.28%), Query Frame = 0
Query:   96 MCVTNSQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMWEKGAIDLETFDGSDDN 321
            M +T SQA+SIRAAF Q  CCNRP+THDLF  VLR SG +V+KAAITHI DDVFIAR WL++ Q +E  VD RPSDAIALALRS APLFLN NLLKQWN++++ I+R+A+HG+CE+V Y+D LKT+RS+R+EL++KPEH+RLA LKMRLDLA+RT+R+GEAA LK++ID+ICPIDRL ++LK+AV EQRFLDAAGIQDRITVWRARLRMWEKGA+DL+ +     N
Sbjct:    1 MSITTSQADSIRAAFAQDACCNRPTTHDLFNRVLRLSGAIVIKAAITHISDDVFIARLWLRV-QGEEMSVDSRPSDAIALALRSKAPLFLNTNLLKQWNIDVDVIEREARHGLCERVLYEDKLKTSRSLRDELRHKPEHIRLAILKMRLDLAVRTQRFGEAAELKKMIDQICPIDRLTEQLKKAVLEQRFLDAAGIQDRITVWRARLRMWEKGALDLDDWQQQQQN 225          
BLAST of Gcaud1788.t1 vs. uniprot
Match: R7Q4S4_CHOCR (BFN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4S4_CHOCR)

HSP 1 Score: 311 bits (797), Expect = 1.480e-101
Identity = 182/350 (52.00%), Postives = 225/350 (64.29%), Query Frame = 0
Query:    1 MTAFAAP--LPLHVSRWTPRRVARRPLATAGRSLSRAAPRCAPLCQHASQAPDYSSGFSPESDSDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTNSQAESIRAAF---------------------------RQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLK---IGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVS-YDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMWEKGAIDLETFDG 317
            M+AFA P  LP  VS    R     P   + R+  R  P CA   Q  SQ+PDY +GF PESD DY EVRVLSFGP RND  LLTL PV  G  AFKM VT +QA+SIRAA                            R      RP+THDLFK+VL   G  V KAAITHI D+VFIAR W++      Q E H+D RPSDAIA+ALRS APL+LN +LL+QWN+ +E I RDA+HG+CE V+ Y D +K+TRSI  EL+  PEH+ LA L+M LDLA+R ER+ EA+ L++ I  ICPIDRL D+LK A+ E+R+   A +QD+IT+WRAR+RMWEKG+I++E   G
Sbjct:    1 MSAFALPSALPSAVSLSRTRHTLC-PRRASPRTPVRRRPPCA---QQPSQSPDYGAGFMPESDPDYEEVRVLSFGPTRNDGSLLTLRPVSGGDRAFKMSVTVAQADSIRAALARTRRNRHIPHPSSTPFSEPSAHLPTGRLDYTLMRPATHDLFKDVLDLFGGFVTKAAITHIQDEVFIARVWVRGPFAVTQDEVHIDSRPSDAIAMALRSRAPLYLNKHLLRQWNVSVEAIARDAKHGLCECVTDYPDEVKSTRSIVHELKGSPEHLILAKLRMELDLAVRLERFQEASRLREQIASICPIDRLSDQLKCAIDEERYXXXAKLQDQITLWRARVRMWEKGSINIEDLQG 346          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A1X6NKT8_PORUM (BFN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKT8_PORUM)

HSP 1 Score: 204 bits (519), Expect = 2.240e-59
Identity = 134/347 (38.62%), Postives = 180/347 (51.87%), Query Frame = 0
Query:    3 AFAAPLPLHVSRWTPRRVARRP--------LATAGRSLS-------RAAPRCAP-LCQHASQA--PDYSSGFSPESDSDYAEVRVLSFGPCRND--SCLLTLSPVRAGKYAFKMCVTNSQAESIRAAFRQHGCCN------RPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKI-----GQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMWEKGAIDLETFDGS 318
            AF AP+PL   R   R  A RP         A AG +         R AP  +P  CQH+S++  P+Y +G+ PE D +Y EV V S GP  N+  + LLTL+PV   K A KM VT  QA SI+ A R            RPSTHDL    L      + KAA+TH+   V+ AR W +      G   E HVD RPSDAI LA R  APLF+N  LL    + +   + +   G+ E+V Y  A+ +TRS+   ++ +PEH++LA LKM LDLA+R ERYGEAA L+  + ++CPI+ LQ                    +I +WR R+  WE+   D +   G+
Sbjct:    2 AFIAPVPLLGPRLPLRVTASRPWTGVRVRAAAAAGSTPVHGPPPSWRTAPSSSPPCCQHSSESEPPNYEAGWVPERDDNYDEVSVFSLGPASNNDVTTLLTLAPVADAKVALKMSVTCGQAASIKDALRNKKLSTAALAAMRPSTHDLLLAFLEAQSAFITKAAVTHVSSAVYHARVWFRTSGGGDGSGVELHVDARPSDAIVLATRCKAPLFINKTLLATRGLPLSQAQTEVSRGLTERVVYASAVMSTRSVVAHVRRQPEHLQLAKLKMELDLAVRLERYGEAARLRDALSKLCPIELLQXXXXXXXXXXXXXXXXXXXXKIQLWRLRMLHWEQHCDDDDEETGT 348          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A7S3EPB2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EPB2_9RHOD)

HSP 1 Score: 180 bits (457), Expect = 4.970e-51
Identity = 102/286 (35.66%), Postives = 166/286 (58.04%), Query Frame = 0
Query:   42 LCQHASQAPDYSSGFSPESDSDYAEVRVLSFGPCRN------DSCLLTLSPVRAGKYAFKMCVTNSQAESIRAAFR-QHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMW-----EKGAIDLETF 315
            +CQ  + AP++  G+ PE D+DY EVRVL+     +       +CL++L+P++    A KM ++ SQ +SI+ A        +RPST DLF NV+R++  +V K AITH+ ++++ AR W++ G +    +D RPSDAI LAL++ APL+LN  LL +W + ++ I ++ ++G      Y++  KT+  I  E    PE    + LK +LDLA+R  R  EA  L   +  + P+  L+ E  +A+ E+R+ DAA + ++IT    +++ W     E+ A D E F
Sbjct:   24 VCQDPTVAPNFKGGWMPEDDTDYTEVRVLTMSRKVSYKEEVCPTCLISLAPIKLHSKALKMTLSGSQVDSIKYALSGSKDKTSRPSTQDLFTNVIRSNNGIVSKCAITHVQNEIYFARIWIRTGYRT-VGMDARPSDAIVLALKNQAPLYLNKRLLAKWGVSMKAIAKEVENGTSSIAQYNEKAKTSAMILAEKARLPEDKETSILKSQLDLALRLNREQEAERLMHELRSVNPLAYLKAEHAKAIKEERYTDAAVLDEQIT--ECKVQNWLRRREERNAEDEEEF 306          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A5J4YYU7_PORPP (BFN domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYU7_PORPP)

HSP 1 Score: 174 bits (440), Expect = 1.040e-47
Identity = 91/208 (43.75%), Postives = 131/208 (62.98%), Query Frame = 0
Query:  101 SQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMWEKG 308
            SQ  S  + F       RPSTHDLF  +L +  +LV K AITHI +DV++AR W++     E  +D RPSDAI LAL S AP++LN  LL +   EI  ++RD + G   ++ Y++ +KTT S+  EL+  PE + L+ LKMRLD+A+R ER+ EAA L + I ++CP++ L ++L+ A+S   F  A+ ++D I  WR RL  WE G
Sbjct:  180 SQQTSYNSTF------GRPSTHDLFHMILDSQLILVTKVAITHIANDVYVARVWVRTAGSAETSMDARPSDAITLALNSMAPIYLNKYLLGRNGTEITAVQRDVRRGFALEIRYENEVKTTSSLAVELKDAPEQIELSKLKMRLDMAVRLERFHEAAHLYKRIQKLCPLEVLNEQLQDAISRNDFQLASRLRDEIYEWRLRLIRWELG 381          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A7S1EV85_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV85_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 9.290e-45
Identity = 88/210 (41.90%), Postives = 124/210 (59.05%), Query Frame = 0
Query:  100 NSQAESIRAAFRQHG---CCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRARLRMWE 306
            N Q  +  AA   H      +RP+THDLFK  +  + VLV KAAITH   DV+IAR W++    +E  +D RPSDAI +AL S AP++LN NLL     +I  ++R+ + G   +++YDD  KTT S+  E++ +PEH+ L+ +KM+LDLA+R ERY EAA L++ I +ICP+D L  +                 D I  WR +L  WE
Sbjct:  156 NQQDANNSAASASHSNEIVRSRPTTHDLFKLAMDVNMVLVTKAAITHFTQDVYIARLWIRAAGGEEVSLDARPSDAITMALNSKAPIYLNANLLDANGSDIRGLEREIRRGYAREMTYDDCQKTTSSLASEVRRRPEHIELSKMKMQLDLAVRLERYHEAAHLQKQILKICPLDTLYAQXXXXXXXXXXXXXXXXXDEIYQWRLKLLRWE 365          
BLAST of Gcaud1788.t1 vs. uniprot
Match: M2Y7U1_GALSU (BFN domain-containing protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y7U1_GALSU)

HSP 1 Score: 124 bits (312), Expect = 1.220e-29
Identity = 84/264 (31.82%), Postives = 131/264 (49.62%), Query Frame = 0
Query:   43 CQHASQAPDYSSGFSPESDSDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTNSQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVS--------YDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVW 298
            CQ  ++APD S G+  E D+DY+  R+ S G C +   +L L PV        + V   +A +I  A       +RP THD     L+  G  + K AITH+    F AR W+      E  +D RPSDA+ALALR +APL+LN  L+    + +E IKR+   G+    S        + +A        + L+   E ++L +L+   DLA R         +++ +    P+ + Q+E  +A+ E+R+ DA+ I+D+I  W
Sbjct:   53 CQKENRAPDVSGGWRVEEDADYSLARIFSVGACDSGYAVL-LHPVSNPFRFLAVFVGEFEAHAIAEA-SSSSFSSRPLTHDFISVTLKLIGSFISKVAITHLTQRAFCARIWVWTMAGYEISLDARPSDAVALALRFHAPLYLNERLVNSAGISLEQIKRELNEGILRNFSPKKTNFSSWKNADSFNSVALKGLEPSEEALKLRSLE---DLAGRITNENLLKSVREKMKIADPVQQFQEEFSKAIREERYEDASLIRDKIYQW 311          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A3C0PE81_9BACT (Uncharacterized protein n=1 Tax=Fibrobacteres bacterium TaxID=2052160 RepID=A0A3C0PE81_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 3.760e-15
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 0
Query:   98 VTNSQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLID 264
            +   QA+SI      H    RP THDLFK+VL +    V +  ++ + DD F AR  ++ G    F  D RPSDAI LALR  APL++N  ++ +  + +E  + +    V  Q S    +KT   +  +++  P       LK RL++AI+ ERY EAA L+  I+
Sbjct:   38 IDEQQAQSIIVLIN-HVEIPRPLTHDLFKSVLDSIEYRVSRMEVSDVRDDTFYARLIVE-GHGDSFDFDARPSDAICLALRFGAPLYVNEKVMDKAGIIME--ESEMHEDVISQPSGISEIKTVSGL--DMEKSPAD----DLKRRLEIAIKEERYEEAARLRDEIN 194          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A836WU92_9AQUI (Bifunctional nuclease family protein n=1 Tax=Hydrogenothermaceae bacterium TaxID=2528249 RepID=A0A836WU92_9AQUI)

HSP 1 Score: 80.9 bits (198), Expect = 1.660e-14
Identity = 66/171 (38.60%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   66 EVRVLSFG-PCRNDSCLLTLSPVRAGKYAFKMCVTNSQAESIRAAFRQHGCCN-RPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNM-EI-ETIKRD---AQHGVCEQVSYDDALKTTRSIREELQ 229
            EV+V + G      S +L L+ V   +Y + + +  S+AE I    +Q G    RP T+DLFKN +   G  V K AI    D+ +IA   L+  + +E  VD RPSDAI LALR NAP++LN N++K+ N+ EI ETI R    A+ G   +   D    TT  + +EL+
Sbjct:    3 EVKVKNIGLDSITGSPILMLTDVNNEEYIYPIWIGISEAEGI--ILKQAGIKTPRPLTYDLFKNTIEKLGAKVKKVAIVDYKDNAYIAEIILE-KEGEEIIVDSRPSDAINLALRFNAPIYLNENVVKKVNLKEIKETIARQQAQAEEGKDTKTVEDLEKATTDEVDKELE 170          
BLAST of Gcaud1788.t1 vs. uniprot
Match: A0A5J4Y9H9_9CHLO (BFN domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9H9_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.150e-14
Identity = 77/279 (27.60%), Postives = 126/279 (45.16%), Query Frame = 0
Query:   49 APDYSSGFSPESD---SDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTNSQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFIARTWLKIGQQQ------EFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETIKRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRTERYGEAAMLKQLIDEICPIDR---LQDELKRAVSEQRFLDAAGIQDRITVW---RARLRMWEKGAIDL 312
            AP  S+G     +   ++Y E +V        DS +L L  +        + V ++++ ++    ++     RP THDL KN L   G  V K  IT +  + + AR     G++       E  VD RPSDAI +A+R +AP++++  +  +   + E  +        E          TRS +E L + P+       K+ L LAI  ERY +A  LK  I+ +   DR   L  +L+ A+ + R  +AA ++D +      RA   + EK  +DL
Sbjct:   70 APQDSNGADTSGEFNLTEYVEAKVERVERTDKDSGMLLLKMLDGRGNILPVFVGDNESTALLQEMQRQPS-TRPMTHDLMKNSLEMLGYRVSKVRITCLVANTYFARIHFSRGRKSQEGVCHEIDVDARPSDAINMAVRFDAPVYVHKQVANRMACQPEKFRPPTTQTTSE---------ITRSCKELLMHFPDPT--VVDKLHLQLAIVEERYADALKLKDKIEGVLNTDRTVRLVVQLEAALHDSRLEEAAQLRDELAREYDRRAAAAVREKQQLDL 336          
The following BLAST results are available for this feature:
BLAST of Gcaud1788.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRQ9_9FLOR1.000e-11170.35BFN domain-containing protein n=1 Tax=Gracilariops... [more]
R7Q4S4_CHOCR1.480e-10152.00BFN domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A1X6NKT8_PORUM2.240e-5938.62BFN domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S3EPB2_9RHOD4.970e-5135.66Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YYU7_PORPP1.040e-4743.75BFN domain-containing protein n=1 Tax=Porphyridium... [more]
A0A7S1EV85_9RHOD9.290e-4541.90Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2Y7U1_GALSU1.220e-2931.82BFN domain-containing protein n=2 Tax=Galdieria su... [more]
A0A3C0PE81_9BACT3.760e-1535.33Uncharacterized protein n=1 Tax=Fibrobacteres bact... [more]
A0A836WU92_9AQUI1.660e-1438.60Bifunctional nuclease family protein n=1 Tax=Hydro... [more]
A0A5J4Y9H9_9CHLO2.150e-1427.60BFN domain-containing protein n=1 Tax=Trebouxia sp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 269..289
NoneNo IPR availablePANTHERPTHR15160VON HIPPEL-LINDAU PROTEINcoord: 103..273
IPR036104Bifunctional nuclease superfamilyGENE3D3.10.690.10Bifunctional nuclease domaincoord: 57..204
e-value: 5.1E-28
score: 99.4
IPR036104Bifunctional nuclease superfamilySUPERFAMILY103256Hypothetical protein TM0160coord: 68..203
IPR003729Bifunctional nuclease domainPFAMPF02577DUF151coord: 94..196
e-value: 7.3E-22
score: 77.3
IPR003729Bifunctional nuclease domainPROSITEPS51658BFNcoord: 59..197
score: 25.895784

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:9114..10097 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1788.t1Gcaud1788.t1Gracilaria caudata M_176_S67 malemRNANODE_472_length_24489_cov_3.453562 9114..10097 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MTAFAAPLPLHVSRWTPRRVARRPLATAGRSLSRAAPRCAPLCQHASQAP
DYSSGFSPESDSDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTN
SQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFI
ARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETI
KRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRT
ERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRA
RLRMWEKGAIDLETFDGSDDNRSPSTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036104BFN_sf
IPR003729Bi_nuclease_dom