Gcaud1788.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1788.t1
Unique Name	Gcaud1788.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:9114..10097 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708409.1
PFAMs	DNase-RNase,VHL
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03871,ko:K08999
KEGG Pathway	ko04066,ko04120,ko04212,ko05200,ko05211,map04066,map04120,map04212,map05200,map05211
KEGG Module	M00383
Evalue	1.53e-29
EggNOG OGs	COG1259@1\|root,2SAAR@2759\|Eukaryota
Description	Bifunctional nuclease
COG category	S
BRITE	ko00000,ko00001,ko00002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1788	Gcaud1788	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 9114..10097 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1788.t1.start1	Gcaud1788.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 9114..9116 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1788.t1.CDS1	Gcaud1788.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 9114..10097 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1788.t1.exon1	Gcaud1788.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 9114..10097 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1788.t1.stop1	Gcaud1788.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 10095..10097 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1788.t1	Gcaud1788.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 9114..10097 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+

mRNA sequence

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MTAFAAPLPLHVSRWTPRRVARRPLATAGRSLSRAAPRCAPLCQHASQAP
DYSSGFSPESDSDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTN
SQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFI
ARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETI
KRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRT
ERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRA
RLRMWEKGAIDLETFDGSDDNRSPSTS*

spliced messenger RNA

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGTTTGCTGCGCCGCTGCCGTTGCACGTCTCGCGCTGGACGCC
GCGTCGCGTGGCACGTCGTCCGTTGGCTACTGCTGGTCGTTCGCTGTCGC
GCGCTGCGCCGCGCTGCGCGCCGCTGTGTCAGCATGCGTCGCAGGCGCCC
GACTACTCGTCCGGCTTCTCGCCCGAGAGCGACTCGGACTACGCCGAGGT
GCGCGTGTTGTCGTTCGGGCCGTGTCGTAACGACAGCTGTTTGCTCACGC
TCAGTCCCGTGCGGGCGGGCAAGTACGCGTTCAAGATGTGTGTGACAAAC
TCGCAGGCGGAGTCTATTCGCGCCGCGTTTCGACAGCATGGCTGCTGCAA
CCGCCCGTCCACGCATGATTTGTTCAAGAACGTGCTGAGGAACAGCGGCG
TGTTGGTGGTGAAGGCCGCTATTACTCACATCCATGACGATGTGTTCATT
GCGAGGACGTGGTTGAAAATCGGACAACAGCAAGAATTTCACGTCGATTG
TCGGCCGTCCGACGCTATTGCGCTGGCGTTGCGCTCCAACGCGCCGCTGT
TCCTCAACCTCAACCTGCTCAAGCAGTGGAACATGGAGATTGAGACCATC
AAGAGGGACGCGCAACACGGCGTGTGCGAGCAGGTGAGTTACGACGACGC
GCTCAAGACCACGCGCTCCATCCGTGAGGAGCTGCAGTACAAACCGGAGC
ACGTGCGACTGGCCACGCTGAAGATGCGCCTCGACCTGGCCATCCGCACC
GAACGGTATGGGGAGGCGGCCATGCTGAAGCAGCTGATCGACGAAATCTG
TCCCATCGATCGACTGCAGGACGAGCTGAAGAGGGCCGTGTCGGAGCAAC
GATTTTTGGACGCCGCCGGTATTCAGGATCGAATCACGGTGTGGAGGGCG
AGGCTGAGGATGTGGGAGAAGGGCGCCATTGACCTGGAGACGTTCGACGG
CTCGGACGACAACCGTTCTCCGTCCACTTCGTAG

protein sequence of Gcaud1788.t1

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MTAFAAPLPLHVSRWTPRRVARRPLATAGRSLSRAAPRCAPLCQHASQAP
DYSSGFSPESDSDYAEVRVLSFGPCRNDSCLLTLSPVRAGKYAFKMCVTN
SQAESIRAAFRQHGCCNRPSTHDLFKNVLRNSGVLVVKAAITHIHDDVFI
ARTWLKIGQQQEFHVDCRPSDAIALALRSNAPLFLNLNLLKQWNMEIETI
KRDAQHGVCEQVSYDDALKTTRSIREELQYKPEHVRLATLKMRLDLAIRT
ERYGEAAMLKQLIDEICPIDRLQDELKRAVSEQRFLDAAGIQDRITVWRA
RLRMWEKGAIDLETFDGSDDNRSPSTS*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGTTTGCTGCGCCGCTGCCGTTGCACGTCTCGCGCTGGACGCC
GCGTCGCGTGGCACGTCGTCCGTTGGCTACTGCTGGTCGTTCGCTGTCGC
GCGCTGCGCCGCGCTGCGCGCCGCTGTGTCAGCATGCGTCGCAGGCGCCC
GACTACTCGTCCGGCTTCTCGCCCGAGAGCGACTCGGACTACGCCGAGGT
GCGCGTGTTGTCGTTCGGGCCGTGTCGTAACGACAGCTGTTTGCTCACGC
TCAGTCCCGTGCGGGCGGGCAAGTACGCGTTCAAGATGTGTGTGACAAAC
TCGCAGGCGGAGTCTATTCGCGCCGCGTTTCGACAGCATGGCTGCTGCAA
CCGCCCGTCCACGCATGATTTGTTCAAGAACGTGCTGAGGAACAGCGGCG
TGTTGGTGGTGAAGGCCGCTATTACTCACATCCATGACGATGTGTTCATT
GCGAGGACGTGGTTGAAAATCGGACAACAGCAAGAATTTCACGTCGATTG
TCGGCCGTCCGACGCTATTGCGCTGGCGTTGCGCTCCAACGCGCCGCTGT
TCCTCAACCTCAACCTGCTCAAGCAGTGGAACATGGAGATTGAGACCATC
AAGAGGGACGCGCAACACGGCGTGTGCGAGCAGGTGAGTTACGACGACGC
GCTCAAGACCACGCGCTCCATCCGTGAGGAGCTGCAGTACAAACCGGAGC
ACGTGCGACTGGCCACGCTGAAGATGCGCCTCGACCTGGCCATCCGCACC
GAACGGTATGGGGAGGCGGCCATGCTGAAGCAGCTGATCGACGAAATCTG
TCCCATCGATCGACTGCAGGACGAGCTGAAGAGGGCCGTGTCGGAGCAAC
GATTTTTGGACGCCGCCGGTATTCAGGATCGAATCACGGTGTGGAGGGCG
AGGCTGAGGATGTGGGAGAAGGGCGCCATTGACCTGGAGACGTTCGACGG
CTCGGACGACAACCGTTCTCCGTCCACTTCGTAG

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+

>Gcaud1788.t1 ID=Gcaud1788.t1|Name=Gcaud1788.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:9114..10097+ (Gracilaria caudata M_176_S67 male)
ATGACTGCGTTTGCTGCGCCGCTGCCGTTGCACGTCTCGCGCTGGACGCC
GCGTCGCGTGGCACGTCGTCCGTTGGCTACTGCTGGTCGTTCGCTGTCGC
GCGCTGCGCCGCGCTGCGCGCCGCTGTGTCAGCATGCGTCGCAGGCGCCC
GACTACTCGTCCGGCTTCTCGCCCGAGAGCGACTCGGACTACGCCGAGGT
GCGCGTGTTGTCGTTCGGGCCGTGTCGTAACGACAGCTGTTTGCTCACGC
TCAGTCCCGTGCGGGCGGGCAAGTACGCGTTCAAGATGTGTGTGACAAAC
TCGCAGGCGGAGTCTATTCGCGCCGCGTTTCGACAGCATGGCTGCTGCAA
CCGCCCGTCCACGCATGATTTGTTCAAGAACGTGCTGAGGAACAGCGGCG
TGTTGGTGGTGAAGGCCGCTATTACTCACATCCATGACGATGTGTTCATT
GCGAGGACGTGGTTGAAAATCGGACAACAGCAAGAATTTCACGTCGATTG
TCGGCCGTCCGACGCTATTGCGCTGGCGTTGCGCTCCAACGCGCCGCTGT
TCCTCAACCTCAACCTGCTCAAGCAGTGGAACATGGAGATTGAGACCATC
AAGAGGGACGCGCAACACGGCGTGTGCGAGCAGGTGAGTTACGACGACGC
GCTCAAGACCACGCGCTCCATCCGTGAGGAGCTGCAGTACAAACCGGAGC
ACGTGCGACTGGCCACGCTGAAGATGCGCCTCGACCTGGCCATCCGCACC
GAACGGTATGGGGAGGCGGCCATGCTGAAGCAGCTGATCGACGAAATCTG
TCCCATCGATCGACTGCAGGACGAGCTGAAGAGGGCCGTGTCGGAGCAAC
GATTTTTGGACGCCGCCGGTATTCAGGATCGAATCACGGTGTGGAGGGCG
AGGCTGAGGATGTGGGAGAAGGGCGCCATTGACCTGGAGACGTTCGACGG
CTCGGACGACAACCGTTCTCCGTCCACTTCGTAG