Gcaud1787.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1787.t1
Unique NameGcaud1787.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:7473..7874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1787Gcaud1787Gracilaria caudata M_176_S67 malegeneNODE_472_length_24489_cov_3.453562 7473..7874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1Gcaud1787.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_472_length_24489_cov_3.453562 7473..7874 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1.stop1Gcaud1787.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_472_length_24489_cov_3.453562 7473..7475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1.CDS1Gcaud1787.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 7473..7579 -
Gcaud1787.t1.CDS2Gcaud1787.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 7751..7874 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1.exon1Gcaud1787.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 7473..7579 -
Gcaud1787.t1.exon2Gcaud1787.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 7751..7874 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1.intron1Gcaud1787.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_472_length_24489_cov_3.453562 7580..7750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1787.t1.start1Gcaud1787.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_472_length_24489_cov_3.453562 7872..7874 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1787.t1 ID=Gcaud1787.t1|Name=Gcaud1787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=77bp
MSELYPSWSIRRTRFKSFSQLCFDHERMGDLIVVRRNESVLSPDDADEKV
EDADNKENDTLPPAPPEPTSQSSAEH*
back to top

spliced messenger RNA

>Gcaud1787.t1 ID=Gcaud1787.t1|Name=Gcaud1787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:7473..7874- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAATTGTATCCGTCTTGGTCCATTCGCAGGACCCGATTCAAATC
GTTTTCGCAGCTTTGTTTTGACCACGAGCGCATGGGTGACCTCATCGTCG
TGCGACGGAATGAAAGTGTGCTTTCGCCCGACGATGCCGACGAGAAAGTT
GAAGACGCCGATAACAAGGAGAACGATACGTTGCCACCTGCGCCACCGGA
ACCCACTTCTCAGAGTTCCGCCGAACATTGA
back to top

protein sequence of Gcaud1787.t1

>Gcaud1787.t1 ID=Gcaud1787.t1|Name=Gcaud1787.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=77bp
MSELYPSWSIRRTRFKSFSQLCFDHERMGDLIVVRRNESVLSPDDADEKV
EDADNKENDTLPPAPPEPTSQSSAEH*
back to top

mRNA from alignment at NODE_472_length_24489_cov_3.453562:7473..7874-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1787.t1 ID=Gcaud1787.t1|Name=Gcaud1787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:7473..7874- (Gracilaria caudata M_176_S67 male)
ATGAGTGAATTGTATCCGTCTTGGTCCATTCGCAGGACCCGATTCAAATC
GTTTTCGCAGCTTTGTTTTGACCACGAGCGCATGGGTGACCTCATCGTCG
TGCGACGGAATGAAAGTGTGCTTTGTGAGTTCAGCAAACATTTTGACCCC
ATCGAGCCCTCACGCGCCGTGCGCCCACGCGAACCGCCACCGCGAGAACC
CGAGAGCCATGCTGAGGCTGATACTCATACCGTCGAGCCGCCCATTCCCG
ATCCCCCTGCGCTCTCTAATGGCAAACTTGAATCCGATACCTCAGCGCCC
GACGATGCCGACGAGAAAGTTGAAGACGCCGATAACAAGGAGAACGATAC
GTTGCCACCTGCGCCACCGGAACCCACTTCTCAGAGTTCCGCCGAACATT
GA
back to top

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:7473..7874-

>Gcaud1787.t1 ID=Gcaud1787.t1|Name=Gcaud1787.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=231bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:7473..7874- (Gracilaria caudata M_176_S67 male)
ATGAGTGAATTGTATCCGTCTTGGTCCATTCGCAGGACCCGATTCAAATC
GTTTTCGCAGCTTTGTTTTGACCACGAGCGCATGGGTGACCTCATCGTCG
TGCGACGGAATGAAAGTGTGCTTTCGCCCGACGATGCCGACGAGAAAGTT
GAAGACGCCGATAACAAGGAGAACGATACGTTGCCACCTGCGCCACCGGA
ACCCACTTCTCAGAGTTCCGCCGAACATTGA
back to top