Gcaud8296.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8296.t1
Unique NameGcaud8296.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4700_length_2061_cov_4.819289contigNODE_4700_length_2061_cov_4.819289:1350..1931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708406.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Evalue1.39e-07
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8296Gcaud8296Gracilaria caudata M_176_S67 malegeneNODE_4700_length_2061_cov_4.819289 1350..1931 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8296.t1.stop1Gcaud8296.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4700_length_2061_cov_4.819289 1350..1352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8296.t1.CDS1Gcaud8296.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4700_length_2061_cov_4.819289 1350..1931 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8296.t1.exon1Gcaud8296.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4700_length_2061_cov_4.819289 1350..1931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8296.t1.start1Gcaud8296.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4700_length_2061_cov_4.819289 1929..1931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8296.t1Gcaud8296.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4700_length_2061_cov_4.819289 1350..1931 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8296.t1 ID=Gcaud8296.t1|Name=Gcaud8296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MPFETENRSRQEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCE
DLKQYPIFAGINWDELMRKGPHPNSVKDVMDKISLEARSREKEGPTTENV
GGESGMYLLRNFDPDEWSNMSFSDVSDGCSTASFFKPNFNVIDDLPNMTR
WVPGWSLTTDNVVPMSKPQLSVRPLGRKPAARSARRLSEKAYR*
back to top

spliced messenger RNA

>Gcaud8296.t1 ID=Gcaud8296.t1|Name=Gcaud8296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_4700_length_2061_cov_4.819289:1350..1931- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTGAGACAGAAAATAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTGTCAACGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGCCCGACATGCGAA
GACCTGAAGCAGTACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAGGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGGTATGTACTTGTTGCGCAACTTTGACCCCGATGAATG
GTCCAATATGAGCTTCAGCGATGTATCCGACGGGTGTTCTACAGCAAGCT
TCTTCAAACCGAATTTCAATGTCATCGACGACTTGCCAAATATGACAAGA
TGGGTTCCAGGTTGGAGTCTTACTACTGACAATGTGGTTCCAATGTCAAA
GCCACAACTATCGGTGCGGCCTTTAGGCAGGAAACCGGCGGCTCGGAGTG
CGAGACGTTTATCGGAAAAGGCGTATCGTTAG
back to top

protein sequence of Gcaud8296.t1

>Gcaud8296.t1 ID=Gcaud8296.t1|Name=Gcaud8296.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MPFETENRSRQEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCE
DLKQYPIFAGINWDELMRKGPHPNSVKDVMDKISLEARSREKEGPTTENV
GGESGMYLLRNFDPDEWSNMSFSDVSDGCSTASFFKPNFNVIDDLPNMTR
WVPGWSLTTDNVVPMSKPQLSVRPLGRKPAARSARRLSEKAYR*
back to top

mRNA from alignment at NODE_4700_length_2061_cov_4.819289:1350..1931-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8296.t1 ID=Gcaud8296.t1|Name=Gcaud8296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_4700_length_2061_cov_4.819289:1350..1931- (Gracilaria caudata M_176_S67 male)
ATGCCGTTTGAGACAGAAAATAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTGTCAACGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGCCCGACATGCGAA
GACCTGAAGCAGTACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAGGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGGTATGTACTTGTTGCGCAACTTTGACCCCGATGAATG
GTCCAATATGAGCTTCAGCGATGTATCCGACGGGTGTTCTACAGCAAGCT
TCTTCAAACCGAATTTCAATGTCATCGACGACTTGCCAAATATGACAAGA
TGGGTTCCAGGTTGGAGTCTTACTACTGACAATGTGGTTCCAATGTCAAA
GCCACAACTATCGGTGCGGCCTTTAGGCAGGAAACCGGCGGCTCGGAGTG
CGAGACGTTTATCGGAAAAGGCGTATCGTTAG
back to top

Coding sequence (CDS) from alignment at NODE_4700_length_2061_cov_4.819289:1350..1931-

>Gcaud8296.t1 ID=Gcaud8296.t1|Name=Gcaud8296.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_4700_length_2061_cov_4.819289:1350..1931- (Gracilaria caudata M_176_S67 male)
ATGCCGTTTGAGACAGAAAATAGAAGTAGACAGGAAATCTTGGAAGACCA
ACGAAAGGCTGAGATTCCTGTCAACGGTCTGTCCGATGAAGGCTACTCTC
TGGTTTGTGCGCTACTGCGTCCCAATCCTCTTCGACGCCCGACATGCGAA
GACCTGAAGCAGTACCCAATTTTCGCGGGTATCAACTGGGACGAGTTGAT
GCGCAAGGGACCGCACCCTAACTCAGTGAAGGACGTAATGGATAAGATAT
CTCTGGAGGCTAGGAGTCGGGAGAAGGAGGGGCCAACGACAGAAAACGTT
GGCGGTGAGAGTGGTATGTACTTGTTGCGCAACTTTGACCCCGATGAATG
GTCCAATATGAGCTTCAGCGATGTATCCGACGGGTGTTCTACAGCAAGCT
TCTTCAAACCGAATTTCAATGTCATCGACGACTTGCCAAATATGACAAGA
TGGGTTCCAGGTTGGAGTCTTACTACTGACAATGTGGTTCCAATGTCAAA
GCCACAACTATCGGTGCGGCCTTTAGGCAGGAAACCGGCGGCTCGGAGTG
CGAGACGTTTATCGGAAAAGGCGTATCGTTAG
back to top