Gcaud1279.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1279.t1
Unique NameGcaud1279.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_468_length_24594_cov_4.796474contigNODE_468_length_24594_cov_4.796474:17923..19568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FJ18
PFAMsDUF2363
Max annot lvl2759|Eukaryota
Evalue4.55e-64
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota
Descriptiongene silencing by RNA
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1279Gcaud1279Gracilaria caudata M_176_S67 malegeneNODE_468_length_24594_cov_4.796474 17923..19568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1Gcaud1279.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_468_length_24594_cov_4.796474 17923..19568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1.start1Gcaud1279.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_468_length_24594_cov_4.796474 17923..17925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1.CDS1Gcaud1279.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 17923..18899 +
Gcaud1279.t1.CDS2Gcaud1279.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 19007..19062 +
Gcaud1279.t1.CDS3Gcaud1279.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 19246..19272 +
Gcaud1279.t1.CDS4Gcaud1279.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 19489..19568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1.exon1Gcaud1279.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 17923..18899 +
Gcaud1279.t1.exon2Gcaud1279.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 19007..19062 +
Gcaud1279.t1.exon3Gcaud1279.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 19246..19272 +
Gcaud1279.t1.exon4Gcaud1279.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 19489..19568 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1.intron1Gcaud1279.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_468_length_24594_cov_4.796474 18900..19006 +
Gcaud1279.t1.intron2Gcaud1279.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_468_length_24594_cov_4.796474 19063..19245 +
Gcaud1279.t1.intron3Gcaud1279.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_468_length_24594_cov_4.796474 19273..19488 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1279.t1.stop1Gcaud1279.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_468_length_24594_cov_4.796474 19566..19568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1279.t1 ID=Gcaud1279.t1|Name=Gcaud1279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MSETNPYSSEQLFLSHLLRLSEDHRSHSNGGDLPTDGEIAKTAAVALHGA
LEDAIRSGASAAAPNISSLRHMWAARHPETSDNAYGLKPISAVVPDPDRF
VILDSGRLVDELGSVVALEDFAPAFVRIPPPILPIELDSKELRWIDPEPL
HEIIWDPDMGMKGERGAELREIISKAIKSLISEPQRMKVLQMLDEDPKLV
YLCGITPQKLPEFVNNNASLAAEILLKLMSSTQMPKYLDALVDMDMNLHS
LGVVSRLSNNVQLPREFMHAYISNCMRSCGDIPDKPAQDHRARLFCKYLK
GFIKDKNIDLQDLLVEVQEFCMRYCRIREVADLYRSLQVSVRRESTPGLR
HPLRLFLSSSHVLLFTMRVWPRPYDLVES*
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spliced messenger RNA

>Gcaud1279.t1 ID=Gcaud1279.t1|Name=Gcaud1279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:17923..19568+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAGACAAACCCTTACTCTTCGGAGCAACTTTTTCTGAGCCATTT
ACTACGTCTGTCAGAAGATCATCGTTCACATTCCAACGGCGGTGATCTTC
CCACAGACGGTGAAATAGCAAAGACGGCAGCTGTTGCGTTACATGGTGCG
CTAGAAGATGCTATTCGCAGTGGCGCTTCCGCCGCAGCCCCAAACATATC
TTCTCTGCGTCACATGTGGGCTGCGAGACATCCTGAGACCTCAGATAACG
CTTACGGTTTAAAACCCATCAGCGCCGTCGTACCGGACCCTGATCGGTTT
GTTATCCTAGATTCTGGGCGGCTAGTTGATGAACTTGGCTCAGTGGTTGC
ATTAGAAGACTTCGCTCCAGCCTTTGTTCGAATACCTCCTCCAATTCTTC
CAATAGAGCTGGACAGTAAGGAGTTGCGTTGGATCGATCCTGAGCCACTG
CATGAGATTATATGGGATCCGGATATGGGAATGAAAGGCGAACGTGGAGC
AGAGCTACGCGAAATCATTTCAAAAGCTATTAAGAGTCTAATATCAGAAC
CTCAGCGAATGAAAGTGCTCCAAATGCTTGATGAGGATCCCAAGCTCGTT
TACCTCTGCGGAATCACCCCGCAGAAATTACCTGAGTTCGTCAATAACAA
CGCATCGCTCGCCGCTGAGATCCTACTAAAGCTGATGTCTTCTACGCAGA
TGCCAAAGTACTTAGATGCGCTTGTCGATATGGATATGAATCTTCATTCG
TTGGGTGTCGTGAGCCGGCTTTCAAACAATGTTCAACTGCCCAGGGAATT
CATGCATGCCTACATAAGTAACTGTATGCGCTCCTGCGGTGATATACCAG
ATAAGCCGGCTCAGGATCATAGGGCTCGCTTATTCTGCAAATACTTAAAA
GGCTTCATCAAGGACAAAAATATAGATCTACAAGACTTACTGGTAGAGGT
CCAGGAGTTTTGTATGCGGTACTGCAGAATTCGAGAAGTTGCAGATTTAT
ACAGATCGCTGCAGGTCTCTGTGAGAAGGGAAAGCACTCCTGGACTCCGG
CATCCACTTCGTCTGTTCCTATCTTCATCCCATGTTCTGCTTTTCACTAT
GCGAGTTTGGCCACGTCCATATGATCTTGTAGAGTCGTGA
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protein sequence of Gcaud1279.t1

>Gcaud1279.t1 ID=Gcaud1279.t1|Name=Gcaud1279.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MSETNPYSSEQLFLSHLLRLSEDHRSHSNGGDLPTDGEIAKTAAVALHGA
LEDAIRSGASAAAPNISSLRHMWAARHPETSDNAYGLKPISAVVPDPDRF
VILDSGRLVDELGSVVALEDFAPAFVRIPPPILPIELDSKELRWIDPEPL
HEIIWDPDMGMKGERGAELREIISKAIKSLISEPQRMKVLQMLDEDPKLV
YLCGITPQKLPEFVNNNASLAAEILLKLMSSTQMPKYLDALVDMDMNLHS
LGVVSRLSNNVQLPREFMHAYISNCMRSCGDIPDKPAQDHRARLFCKYLK
GFIKDKNIDLQDLLVEVQEFCMRYCRIREVADLYRSLQVSVRRESTPGLR
HPLRLFLSSSHVLLFTMRVWPRPYDLVES*
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mRNA from alignment at NODE_468_length_24594_cov_4.796474:17923..19568+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1279.t1 ID=Gcaud1279.t1|Name=Gcaud1279.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1646bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:17923..19568+ (Gracilaria caudata M_176_S67 male)
ATGAGTGAGACAAACCCTTACTCTTCGGAGCAACTTTTTCTGAGCCATTT
ACTACGTCTGTCAGAAGATCATCGTTCACATTCCAACGGCGGTGATCTTC
CCACAGACGGTGAAATAGCAAAGACGGCAGCTGTTGCGTTACATGGTGCG
CTAGAAGATGCTATTCGCAGTGGCGCTTCCGCCGCAGCCCCAAACATATC
TTCTCTGCGTCACATGTGGGCTGCGAGACATCCTGAGACCTCAGATAACG
CTTACGGTTTAAAACCCATCAGCGCCGTCGTACCGGACCCTGATCGGTTT
GTTATCCTAGATTCTGGGCGGCTAGTTGATGAACTTGGCTCAGTGGTTGC
ATTAGAAGACTTCGCTCCAGCCTTTGTTCGAATACCTCCTCCAATTCTTC
CAATAGAGCTGGACAGTAAGGAGTTGCGTTGGATCGATCCTGAGCCACTG
CATGAGATTATATGGGATCCGGATATGGGAATGAAAGGCGAACGTGGAGC
AGAGCTACGCGAAATCATTTCAAAAGCTATTAAGAGTCTAATATCAGAAC
CTCAGCGAATGAAAGTGCTCCAAATGCTTGATGAGGATCCCAAGCTCGTT
TACCTCTGCGGAATCACCCCGCAGAAATTACCTGAGTTCGTCAATAACAA
CGCATCGCTCGCCGCTGAGATCCTACTAAAGCTGATGTCTTCTACGCAGA
TGCCAAAGTACTTAGATGCGCTTGTCGATATGGATATGAATCTTCATTCG
TTGGGTGTCGTGAGCCGGCTTTCAAACAATGTTCAACTGCCCAGGGAATT
CATGCATGCCTACATAAGTAACTGTATGCGCTCCTGCGGTGATATACCAG
ATAAGCCGGCTCAGGATCATAGGGCTCGCTTATTCTGCAAATACTTAAAA
GGCTTCATCAAGGACAAAAATATAGATCTACAAGACTTACTGGTAGAGGT
CCAGGAGTTTTGTATGCGGTACTGCAGGTAAGATATAGTTTGTAATGCTC
ATGGTGATCCCTCAACTCTTAGACTTCAGACTGACAGTTTGTTAATCGAA
TGCTGATTTTCATCTCGGATCTTTGCAACGACAGAATTCGAGAAGTTGCA
GATTTATACAGATCGCTGCAGGTCTCTGTGAGAAGGGAAAGTGCACAATA
ATGATTAGTGTTTGCTGGAGGACCCTTTGGTAAGTACGAACTGCGTTTGT
TTTATTCGCTGCAAGATAAGCAAGTTTATGCCTCCGACTACGTTATGCTC
GAAAAATCTGCTCTACTTCAAGTTGCACGATTCGTCGTGGTGAAGATCTC
TTTCACCAGGGTGCTTTAGACAGGCACTCCTGGACTCCGGCATCCACTTC
GTAAGTTGTTTTAAACAGTTTGTTATTCGTCAGTTACAAGATTTCGGGGA
CGCCCAAAACAAGGGATTATGTGTTCCAGCAATTGTATCGTCAACCCTGG
AACTTGAGACAATGCATCTGGGATCCTTGTCAAAAGGTGCCACGACGCGC
AGGAAAGGGAACCCACAAAGCGGAAGAAACCGTCAAGCTCACCCTCAGTT
TCATCTCGGATTGTAGGTCTGTTCCTATCTTCATCCCATGTTCTGCTTTT
CACTATGCGAGTTTGGCCACGTCCATATGATCTTGTAGAGTCGTGA
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Coding sequence (CDS) from alignment at NODE_468_length_24594_cov_4.796474:17923..19568+

>Gcaud1279.t1 ID=Gcaud1279.t1|Name=Gcaud1279.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:17923..19568+ (Gracilaria caudata M_176_S67 male)
ATGAGTGAGACAAACCCTTACTCTTCGGAGCAACTTTTTCTGAGCCATTT
ACTACGTCTGTCAGAAGATCATCGTTCACATTCCAACGGCGGTGATCTTC
CCACAGACGGTGAAATAGCAAAGACGGCAGCTGTTGCGTTACATGGTGCG
CTAGAAGATGCTATTCGCAGTGGCGCTTCCGCCGCAGCCCCAAACATATC
TTCTCTGCGTCACATGTGGGCTGCGAGACATCCTGAGACCTCAGATAACG
CTTACGGTTTAAAACCCATCAGCGCCGTCGTACCGGACCCTGATCGGTTT
GTTATCCTAGATTCTGGGCGGCTAGTTGATGAACTTGGCTCAGTGGTTGC
ATTAGAAGACTTCGCTCCAGCCTTTGTTCGAATACCTCCTCCAATTCTTC
CAATAGAGCTGGACAGTAAGGAGTTGCGTTGGATCGATCCTGAGCCACTG
CATGAGATTATATGGGATCCGGATATGGGAATGAAAGGCGAACGTGGAGC
AGAGCTACGCGAAATCATTTCAAAAGCTATTAAGAGTCTAATATCAGAAC
CTCAGCGAATGAAAGTGCTCCAAATGCTTGATGAGGATCCCAAGCTCGTT
TACCTCTGCGGAATCACCCCGCAGAAATTACCTGAGTTCGTCAATAACAA
CGCATCGCTCGCCGCTGAGATCCTACTAAAGCTGATGTCTTCTACGCAGA
TGCCAAAGTACTTAGATGCGCTTGTCGATATGGATATGAATCTTCATTCG
TTGGGTGTCGTGAGCCGGCTTTCAAACAATGTTCAACTGCCCAGGGAATT
CATGCATGCCTACATAAGTAACTGTATGCGCTCCTGCGGTGATATACCAG
ATAAGCCGGCTCAGGATCATAGGGCTCGCTTATTCTGCAAATACTTAAAA
GGCTTCATCAAGGACAAAAATATAGATCTACAAGACTTACTGGTAGAGGT
CCAGGAGTTTTGTATGCGGTACTGCAGAATTCGAGAAGTTGCAGATTTAT
ACAGATCGCTGCAGGTCTCTGTGAGAAGGGAAAGCACTCCTGGACTCCGG
CATCCACTTCGTCTGTTCCTATCTTCATCCCATGTTCTGCTTTTCACTAT
GCGAGTTTGGCCACGTCCATATGATCTTGTAGAGTCGTGA
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