Gcaud7880.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7880.t1
Unique Name	Gcaud7880.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	744

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_465_length_24681_cov_4.375641	contig	NODE_465_length_24681_cov_4.375641:3828..6059 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10007387
PFAMs	Nicastrin
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06171
KEGG Pathway	ko04330,ko05010,map04330,map05010
KEGG Module	M00682
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0010467,GO:0016020,GO:0016021,GO:0016485,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Evalue	3.66e-25
EggNOG OGs	KOG2657@1\|root,KOG2657@2759\|Eukaryota,37MBS@33090\|Viridiplantae,3G7N9@35493\|Streptophyta,4JJZ8@91835\|fabids
Description	Nicastrin
COG category	OT
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7880	Gcaud7880	Gracilaria caudata M_176_S67 male	gene	NODE_465_length_24681_cov_4.375641 3828..6059 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7880.t1.stop1	Gcaud7880.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_465_length_24681_cov_4.375641 3828..3830 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7880.t1.CDS1	Gcaud7880.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_465_length_24681_cov_4.375641 3828..6059 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7880.t1.exon1	Gcaud7880.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_465_length_24681_cov_4.375641 3828..6059 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7880.t1.start1	Gcaud7880.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_465_length_24681_cov_4.375641 6057..6059 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7880.t1	Gcaud7880.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_465_length_24681_cov_4.375641 3828..6059 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_465_length_24681_cov_4.375641:3828..6059-
coding sequence from alignment at NODE_465_length_24681_cov_4.375641:3828..6059-

mRNA sequence

>Gcaud7880.t1 ID=Gcaud7880.t1|Name=Gcaud7880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp
MQSNNVSSRGCGQCDADIREAPVRELRSLEELTQVARLQEDRAIALVPER
VFFSKKVRSGITFWKNIDALIVYGGPPQRPGEFIDESVGNETQDQLFNYS
LEESEPNRLYNFYGDKGSDDQCNEGRPRRNLGDCTFQRFIPFNIFHINAS
LAGEILASASRFRDPTIVPNGNSRGAFSPQYKLQSIGRMWACATSMTPTP
SGIITNESTVNTDIAGSSVTSEQCLRDRTCLPIGGHSVWSALGRVNSSTA
EAPRKYLFITAPMDSYAFFPEFGLGAGAEISSLAVLMAVAEAVASYWRQE
ILKSGGDFVRQPVYFAFNSQTWGYAGSSRFLRDMLEFDCREEASIPEGQK
GCKKPFISNLKFMEFREADIQVLNLGQLITPSTNNNTSAFKFFTHREDEL
GEALENVLNNSFRGQRLSLERGGRDIDSEEPLIPIDASQSFNFFFNSSKI
DVVSITNYPLNFSTEIYHSMLDTELRISQPDQREPMYKAAEAIASTVVNI
AFNETKAVPVLRTTIDNIITCMTGNWTNCPMVLDYLGKEYENTTVTPGNY
AGPFFPSDVLRFNNPSAAGKLAFIRAFFAHHNHFNQSAVDCSTERDCASY
NRDINEKSSPQRQSDLLDAQCTRSRCVVSDTYLHRAFGGGINMVDSVGGF
ELEKRFEREEFDGNLPRQGDWTESFWDPDTGFCGQVQDSDIYEGVILGVG
ISVLVLSFIFGIWLDRALFDDKSPLRRDTTGISSPGESLVPPV*

spliced messenger RNA

>Gcaud7880.t1 ID=Gcaud7880.t1|Name=Gcaud7880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:3828..6059- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCAACAACGTTTCTTCTCGTGGATGTGGGCAGTGCGACGCAGA
TATTCGTGAGGCACCAGTTCGTGAGCTCCGCAGCCTTGAGGAGCTCACTC
AAGTTGCCAGGCTGCAGGAAGATCGAGCCATTGCCCTGGTTCCCGAACGC
GTGTTCTTTTCAAAGAAGGTCAGGTCTGGTATTACCTTTTGGAAAAATAT
CGATGCTCTAATTGTTTATGGGGGTCCCCCTCAACGCCCAGGCGAATTTA
TAGACGAAAGCGTTGGTAACGAAACCCAAGACCAGCTCTTTAATTATTCG
CTCGAAGAATCCGAGCCGAATCGGCTGTACAACTTCTATGGCGATAAAGG
ATCCGACGACCAATGTAATGAAGGGAGACCGCGTCGTAACCTGGGCGATT
GCACTTTCCAACGGTTCATACCTTTCAATATCTTTCATATCAATGCCTCT
TTAGCAGGGGAGATTCTTGCATCGGCAAGCCGATTTCGTGATCCTACCAT
TGTTCCCAACGGAAATAGTAGAGGTGCTTTTTCGCCGCAGTACAAGCTTC
AATCCATTGGTAGAATGTGGGCATGTGCAACCAGCATGACCCCTACCCCC
TCTGGTATTATCACCAACGAGAGCACCGTTAACACAGACATTGCGGGTTC
TTCTGTTACCTCAGAGCAATGCTTACGAGATAGGACATGTTTACCAATAG
GTGGACATTCTGTTTGGTCCGCTCTTGGGCGAGTCAACTCGAGTACGGCT
GAGGCTCCTCGTAAGTATTTATTTATTACAGCACCAATGGACTCTTACGC
ATTCTTCCCTGAGTTTGGGTTGGGGGCAGGAGCAGAAATATCTTCATTGG
CTGTGCTCATGGCTGTGGCCGAAGCGGTGGCATCCTATTGGCGCCAAGAG
ATCTTGAAGAGCGGAGGCGATTTTGTACGTCAGCCCGTGTACTTCGCATT
TAACTCACAGACTTGGGGCTATGCGGGTTCTTCAAGGTTTTTGAGAGACA
TGCTAGAATTTGATTGTCGTGAAGAGGCAAGCATACCTGAGGGTCAAAAA
GGATGCAAAAAGCCTTTCATCAGCAATCTTAAGTTTATGGAATTTAGAGA
GGCTGATATACAAGTGCTCAATCTTGGTCAGCTAATAACGCCATCCACAA
ATAATAACACGTCTGCGTTTAAGTTCTTCACCCATCGCGAGGATGAACTT
GGTGAAGCCCTTGAAAACGTGTTGAATAACTCCTTTAGAGGCCAGCGATT
GAGCCTTGAGCGCGGTGGACGTGATATAGATTCCGAAGAACCTTTGATTC
CAATCGATGCCTCTCAAAGTTTCAACTTTTTCTTCAACAGTAGTAAGATC
GATGTTGTGAGCATAACCAACTACCCTCTGAACTTCAGCACAGAAATTTA
CCACTCAATGCTTGACACTGAGTTACGAATAAGTCAACCTGACCAAAGGG
AACCAATGTACAAGGCGGCAGAGGCCATTGCGTCAACAGTGGTGAACATT
GCTTTTAACGAGACTAAAGCGGTACCTGTACTGAGAACAACAATTGACAA
TATCATTACGTGCATGACCGGTAACTGGACGAACTGCCCCATGGTGCTAG
ATTACTTAGGGAAGGAATATGAGAACACAACAGTTACGCCTGGGAACTAC
GCTGGCCCCTTCTTCCCTTCTGATGTCCTCCGCTTCAATAATCCTAGTGC
CGCTGGCAAGCTGGCTTTCATTCGAGCCTTTTTTGCTCATCATAACCATT
TCAATCAAAGCGCAGTGGATTGCAGTACTGAAAGAGACTGCGCTAGCTAC
AACCGCGATATCAACGAAAAATCATCTCCTCAAAGGCAATCTGACCTCCT
GGACGCACAGTGCACTCGTAGTCGGTGTGTCGTCTCAGATACTTACCTCC
ACAGAGCATTCGGAGGGGGAATTAACATGGTTGATTCCGTTGGAGGTTTC
GAGCTCGAGAAGAGGTTTGAGCGGGAGGAGTTTGATGGCAATTTACCTCG
TCAGGGGGACTGGACAGAAAGTTTTTGGGATCCTGATACTGGTTTTTGTG
GACAAGTCCAGGACAGCGACATTTACGAAGGTGTCATCCTCGGCGTGGGA
ATATCTGTTCTCGTCTTGAGCTTCATTTTCGGTATCTGGCTTGACCGCGC
CTTGTTTGATGACAAGAGCCCGTTGAGAAGGGATACAACCGGCATCTCAA
GCCCTGGGGAATCCCTTGTACCACCAGTGTAG

protein sequence of Gcaud7880.t1

>Gcaud7880.t1 ID=Gcaud7880.t1|Name=Gcaud7880.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=744bp
MQSNNVSSRGCGQCDADIREAPVRELRSLEELTQVARLQEDRAIALVPER
VFFSKKVRSGITFWKNIDALIVYGGPPQRPGEFIDESVGNETQDQLFNYS
LEESEPNRLYNFYGDKGSDDQCNEGRPRRNLGDCTFQRFIPFNIFHINAS
LAGEILASASRFRDPTIVPNGNSRGAFSPQYKLQSIGRMWACATSMTPTP
SGIITNESTVNTDIAGSSVTSEQCLRDRTCLPIGGHSVWSALGRVNSSTA
EAPRKYLFITAPMDSYAFFPEFGLGAGAEISSLAVLMAVAEAVASYWRQE
ILKSGGDFVRQPVYFAFNSQTWGYAGSSRFLRDMLEFDCREEASIPEGQK
GCKKPFISNLKFMEFREADIQVLNLGQLITPSTNNNTSAFKFFTHREDEL
GEALENVLNNSFRGQRLSLERGGRDIDSEEPLIPIDASQSFNFFFNSSKI
DVVSITNYPLNFSTEIYHSMLDTELRISQPDQREPMYKAAEAIASTVVNI
AFNETKAVPVLRTTIDNIITCMTGNWTNCPMVLDYLGKEYENTTVTPGNY
AGPFFPSDVLRFNNPSAAGKLAFIRAFFAHHNHFNQSAVDCSTERDCASY
NRDINEKSSPQRQSDLLDAQCTRSRCVVSDTYLHRAFGGGINMVDSVGGF
ELEKRFEREEFDGNLPRQGDWTESFWDPDTGFCGQVQDSDIYEGVILGVG
ISVLVLSFIFGIWLDRALFDDKSPLRRDTTGISSPGESLVPPV*

mRNA from alignment at NODE_465_length_24681_cov_4.375641:3828..6059-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7880.t1 ID=Gcaud7880.t1|Name=Gcaud7880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2232bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:3828..6059- (Gracilaria caudata M_176_S67 male)
ATGCAGAGCAACAACGTTTCTTCTCGTGGATGTGGGCAGTGCGACGCAGA
TATTCGTGAGGCACCAGTTCGTGAGCTCCGCAGCCTTGAGGAGCTCACTC
AAGTTGCCAGGCTGCAGGAAGATCGAGCCATTGCCCTGGTTCCCGAACGC
GTGTTCTTTTCAAAGAAGGTCAGGTCTGGTATTACCTTTTGGAAAAATAT
CGATGCTCTAATTGTTTATGGGGGTCCCCCTCAACGCCCAGGCGAATTTA
TAGACGAAAGCGTTGGTAACGAAACCCAAGACCAGCTCTTTAATTATTCG
CTCGAAGAATCCGAGCCGAATCGGCTGTACAACTTCTATGGCGATAAAGG
ATCCGACGACCAATGTAATGAAGGGAGACCGCGTCGTAACCTGGGCGATT
GCACTTTCCAACGGTTCATACCTTTCAATATCTTTCATATCAATGCCTCT
TTAGCAGGGGAGATTCTTGCATCGGCAAGCCGATTTCGTGATCCTACCAT
TGTTCCCAACGGAAATAGTAGAGGTGCTTTTTCGCCGCAGTACAAGCTTC
AATCCATTGGTAGAATGTGGGCATGTGCAACCAGCATGACCCCTACCCCC
TCTGGTATTATCACCAACGAGAGCACCGTTAACACAGACATTGCGGGTTC
TTCTGTTACCTCAGAGCAATGCTTACGAGATAGGACATGTTTACCAATAG
GTGGACATTCTGTTTGGTCCGCTCTTGGGCGAGTCAACTCGAGTACGGCT
GAGGCTCCTCGTAAGTATTTATTTATTACAGCACCAATGGACTCTTACGC
ATTCTTCCCTGAGTTTGGGTTGGGGGCAGGAGCAGAAATATCTTCATTGG
CTGTGCTCATGGCTGTGGCCGAAGCGGTGGCATCCTATTGGCGCCAAGAG
ATCTTGAAGAGCGGAGGCGATTTTGTACGTCAGCCCGTGTACTTCGCATT
TAACTCACAGACTTGGGGCTATGCGGGTTCTTCAAGGTTTTTGAGAGACA
TGCTAGAATTTGATTGTCGTGAAGAGGCAAGCATACCTGAGGGTCAAAAA
GGATGCAAAAAGCCTTTCATCAGCAATCTTAAGTTTATGGAATTTAGAGA
GGCTGATATACAAGTGCTCAATCTTGGTCAGCTAATAACGCCATCCACAA
ATAATAACACGTCTGCGTTTAAGTTCTTCACCCATCGCGAGGATGAACTT
GGTGAAGCCCTTGAAAACGTGTTGAATAACTCCTTTAGAGGCCAGCGATT
GAGCCTTGAGCGCGGTGGACGTGATATAGATTCCGAAGAACCTTTGATTC
CAATCGATGCCTCTCAAAGTTTCAACTTTTTCTTCAACAGTAGTAAGATC
GATGTTGTGAGCATAACCAACTACCCTCTGAACTTCAGCACAGAAATTTA
CCACTCAATGCTTGACACTGAGTTACGAATAAGTCAACCTGACCAAAGGG
AACCAATGTACAAGGCGGCAGAGGCCATTGCGTCAACAGTGGTGAACATT
GCTTTTAACGAGACTAAAGCGGTACCTGTACTGAGAACAACAATTGACAA
TATCATTACGTGCATGACCGGTAACTGGACGAACTGCCCCATGGTGCTAG
ATTACTTAGGGAAGGAATATGAGAACACAACAGTTACGCCTGGGAACTAC
GCTGGCCCCTTCTTCCCTTCTGATGTCCTCCGCTTCAATAATCCTAGTGC
CGCTGGCAAGCTGGCTTTCATTCGAGCCTTTTTTGCTCATCATAACCATT
TCAATCAAAGCGCAGTGGATTGCAGTACTGAAAGAGACTGCGCTAGCTAC
AACCGCGATATCAACGAAAAATCATCTCCTCAAAGGCAATCTGACCTCCT
GGACGCACAGTGCACTCGTAGTCGGTGTGTCGTCTCAGATACTTACCTCC
ACAGAGCATTCGGAGGGGGAATTAACATGGTTGATTCCGTTGGAGGTTTC
GAGCTCGAGAAGAGGTTTGAGCGGGAGGAGTTTGATGGCAATTTACCTCG
TCAGGGGGACTGGACAGAAAGTTTTTGGGATCCTGATACTGGTTTTTGTG
GACAAGTCCAGGACAGCGACATTTACGAAGGTGTCATCCTCGGCGTGGGA
ATATCTGTTCTCGTCTTGAGCTTCATTTTCGGTATCTGGCTTGACCGCGC
CTTGTTTGATGACAAGAGCCCGTTGAGAAGGGATACAACCGGCATCTCAA
GCCCTGGGGAATCCCTTGTACCACCAGTGTAG

Coding sequence (CDS) from alignment at NODE_465_length_24681_cov_4.375641:3828..6059-

>Gcaud7880.t1 ID=Gcaud7880.t1|Name=Gcaud7880.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2232bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:3828..6059- (Gracilaria caudata M_176_S67 male)
ATGCAGAGCAACAACGTTTCTTCTCGTGGATGTGGGCAGTGCGACGCAGA
TATTCGTGAGGCACCAGTTCGTGAGCTCCGCAGCCTTGAGGAGCTCACTC
AAGTTGCCAGGCTGCAGGAAGATCGAGCCATTGCCCTGGTTCCCGAACGC
GTGTTCTTTTCAAAGAAGGTCAGGTCTGGTATTACCTTTTGGAAAAATAT
CGATGCTCTAATTGTTTATGGGGGTCCCCCTCAACGCCCAGGCGAATTTA
TAGACGAAAGCGTTGGTAACGAAACCCAAGACCAGCTCTTTAATTATTCG
CTCGAAGAATCCGAGCCGAATCGGCTGTACAACTTCTATGGCGATAAAGG
ATCCGACGACCAATGTAATGAAGGGAGACCGCGTCGTAACCTGGGCGATT
GCACTTTCCAACGGTTCATACCTTTCAATATCTTTCATATCAATGCCTCT
TTAGCAGGGGAGATTCTTGCATCGGCAAGCCGATTTCGTGATCCTACCAT
TGTTCCCAACGGAAATAGTAGAGGTGCTTTTTCGCCGCAGTACAAGCTTC
AATCCATTGGTAGAATGTGGGCATGTGCAACCAGCATGACCCCTACCCCC
TCTGGTATTATCACCAACGAGAGCACCGTTAACACAGACATTGCGGGTTC
TTCTGTTACCTCAGAGCAATGCTTACGAGATAGGACATGTTTACCAATAG
GTGGACATTCTGTTTGGTCCGCTCTTGGGCGAGTCAACTCGAGTACGGCT
GAGGCTCCTCGTAAGTATTTATTTATTACAGCACCAATGGACTCTTACGC
ATTCTTCCCTGAGTTTGGGTTGGGGGCAGGAGCAGAAATATCTTCATTGG
CTGTGCTCATGGCTGTGGCCGAAGCGGTGGCATCCTATTGGCGCCAAGAG
ATCTTGAAGAGCGGAGGCGATTTTGTACGTCAGCCCGTGTACTTCGCATT
TAACTCACAGACTTGGGGCTATGCGGGTTCTTCAAGGTTTTTGAGAGACA
TGCTAGAATTTGATTGTCGTGAAGAGGCAAGCATACCTGAGGGTCAAAAA
GGATGCAAAAAGCCTTTCATCAGCAATCTTAAGTTTATGGAATTTAGAGA
GGCTGATATACAAGTGCTCAATCTTGGTCAGCTAATAACGCCATCCACAA
ATAATAACACGTCTGCGTTTAAGTTCTTCACCCATCGCGAGGATGAACTT
GGTGAAGCCCTTGAAAACGTGTTGAATAACTCCTTTAGAGGCCAGCGATT
GAGCCTTGAGCGCGGTGGACGTGATATAGATTCCGAAGAACCTTTGATTC
CAATCGATGCCTCTCAAAGTTTCAACTTTTTCTTCAACAGTAGTAAGATC
GATGTTGTGAGCATAACCAACTACCCTCTGAACTTCAGCACAGAAATTTA
CCACTCAATGCTTGACACTGAGTTACGAATAAGTCAACCTGACCAAAGGG
AACCAATGTACAAGGCGGCAGAGGCCATTGCGTCAACAGTGGTGAACATT
GCTTTTAACGAGACTAAAGCGGTACCTGTACTGAGAACAACAATTGACAA
TATCATTACGTGCATGACCGGTAACTGGACGAACTGCCCCATGGTGCTAG
ATTACTTAGGGAAGGAATATGAGAACACAACAGTTACGCCTGGGAACTAC
GCTGGCCCCTTCTTCCCTTCTGATGTCCTCCGCTTCAATAATCCTAGTGC
CGCTGGCAAGCTGGCTTTCATTCGAGCCTTTTTTGCTCATCATAACCATT
TCAATCAAAGCGCAGTGGATTGCAGTACTGAAAGAGACTGCGCTAGCTAC
AACCGCGATATCAACGAAAAATCATCTCCTCAAAGGCAATCTGACCTCCT
GGACGCACAGTGCACTCGTAGTCGGTGTGTCGTCTCAGATACTTACCTCC
ACAGAGCATTCGGAGGGGGAATTAACATGGTTGATTCCGTTGGAGGTTTC
GAGCTCGAGAAGAGGTTTGAGCGGGAGGAGTTTGATGGCAATTTACCTCG
TCAGGGGGACTGGACAGAAAGTTTTTGGGATCCTGATACTGGTTTTTGTG
GACAAGTCCAGGACAGCGACATTTACGAAGGTGTCATCCTCGGCGTGGGA
ATATCTGTTCTCGTCTTGAGCTTCATTTTCGGTATCTGGCTTGACCGCGC
CTTGTTTGATGACAAGAGCCCGTTGAGAAGGGATACAACCGGCATCTCAA
GCCCTGGGGAATCCCTTGTACCACCAGTGTAG