Gcaud7498.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7498.t1
Unique NameGcaud7498.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length187
Homology
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A2V3J3U5_9FLOR (40S ribosomal protein S6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3U5_9FLOR)

HSP 1 Score: 304 bits (779), Expect = 1.000e-102
Identity = 169/245 (68.98%), Postives = 183/245 (74.69%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTKAEH 186
            MKLNLADPQTGAQKQID+DDEK+LQHLYDMRLAQE+KG+DLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLM++G  GCRGYGMRKGERKRKS                                                           YVIRREIP+KEGA++GAKPKSKAPKIQRLVTPLTIHRKRRR+ALK+A+IKASKAAAAEYEKLL QRNA+ARESRKTSLSKRRSTKA+H
Sbjct:    1 MKLNLADPQTGAQKQIDVDDEKRLQHLYDMRLAQEVKGDDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMNRGTPGCRGYGMRKGERKRKSVRGCIISHEIAVLNLVVVKSGESPIAGLSDRHLPRRLGPKRASKIRKLFNLTKADDVRKYVIRREIPLKEGAREGAKPKSKAPKIQRLVTPLTIHRKRRRFALKIASIKASKAAAAEYEKLLVQRNAQARESRKTSLSKRRSTKADH 245          
BLAST of Gcaud7498.t1 vs. uniprot
Match: R7Q3M5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3M5_CHOCR)

HSP 1 Score: 268 bits (686), Expect = 1.710e-87
Identity = 153/242 (63.22%), Postives = 169/242 (69.83%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTK 183
            MKLNLADPQTGAQK+I+++DEK+LQHLYDMRLA EI G+DLG++Y+GYIFRIMGGQDKQGFAMKQGVLTPNRVRLLM K   GCRGYGMR GERKRKS                                                           YVIRREIPVKEGAK+GAKP+SKAPKIQRLVTP  I RKR+RYA K+A+I AS+AAAAEYEKLLAQRN EARESRKTSLSKRRS +
Sbjct:   78 MKLNLADPQTGAQKKIEVEDEKRLQHLYDMRLAMEIDGDDLGEEYRGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMSKNTPGCRGYGMRSGERKRKSVRGCIISHQISVLNLLVVKNGDSPIEGLTDRTIPRRLGPKRASNIRKLFNLSKDDDVRKYVIRREIPVKEGAKEGAKPRSKAPKIQRLVTPQGIQRKRKRYARKIASITASRAAAAEYEKLLAQRNKEARESRKTSLSKRRSAR 319          
BLAST of Gcaud7498.t1 vs. uniprot
Match: UPI001E1E0BF4 (LOW QUALITY PROTEIN: 40S ribosomal protein S6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0BF4)

HSP 1 Score: 224 bits (572), Expect = 2.800e-71
Identity = 132/242 (54.55%), Postives = 157/242 (64.88%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTK 183
            MKLNLA+P TGAQ+ ++IDDEK+L+  YD RLA E+ GE +GD+YKGY+F+IMGGQDKQGFAMKQG+ TP+RVRLLM KG +GCRGY MR GERKRKS                                                           YVIRRE+  K   K+GAKP+SKAPKIQRLVTP TIHRKRRR+A KVA+I+ SKAAAAEYE+LLAQRN E +ESR+ S+SKR S +
Sbjct:    1 MKLNLANPATGAQRLVEIDDEKRLRAFYDQRLASEVDGEHIGDEYKGYVFKIMGGQDKQGFAMKQGINTPSRVRLLMLKGQTGCRGYAMRSGERKRKSVRGCIISHEISVLNLTIVKNGDAPIEGLTDRAIPRRLGPKRASKIRKLFALSKEDDVRKYVIRREVASK---KEGAKPRSKAPKIQRLVTPATIHRKRRRFANKVASIQRSKAAAAEYERLLAQRNKEKQESRRASISKRASAR 239          
BLAST of Gcaud7498.t1 vs. uniprot
Match: Q7XY98_GRIJA (40S ribosomal protein S6 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY98_GRIJA)

HSP 1 Score: 224 bits (572), Expect = 3.080e-71
Identity = 133/243 (54.73%), Postives = 155/243 (63.79%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTKA 184
            MK+N+ADPQ+GAQK  +IDDEKKLQ+LYDMRLAQE+ G  LGD++KGYIFR+MGGQDKQGFAMKQGVLT +RVRLLM K   GCRGYGMRKGERKRKS                                                           YVIRREIPVK+ A+ GAK  SKA +   L+    +HRKRRR ALK A++ AS+ A AEYEK++A+RN EAR+SRKTSLSKRRS KA
Sbjct:    1 MKINIADPQSGAQKMFEIDDEKKLQYLYDMRLAQEVTGVHLGDEFKGYIFRVMGGQDKQGFAMKQGVLTADRVRLLMSKNTQGCRGYGMRKGERKRKSVRGCIISHHISVLHLLVVKNGEQPIDGLTNRQIPRRLGPKRASNIRKLFNLTKEDDVPKYVIRREIPVKDDAQRGAKLGSKARRFSDLLPRSGLHRKRRRIALKKASVAASRKAMAEYEKMIAKRNLEARQSRKTSLSKRRSAKA 243          
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A7S1EQX1_9RHOD (40S ribosomal protein S6 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQX1_9RHOD)

HSP 1 Score: 205 bits (522), Expect = 1.030e-63
Identity = 123/243 (50.62%), Postives = 153/243 (62.96%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTKA 184
            MKLN+++P TG QK+I+ID+EK+L+ LY+ R+AQE+ G+ LGD++KGY+F+I GGQDKQGFAMKQGVLT  RVRLLM KG  GCRGYGMRKGERKRKS                                                           YVIRREI  K   K+GAKP SKAPKIQRLVTPLT+ RKRRR AL++ ++  SKA AAEYEKLLA++N + R SR++S S+ + + A
Sbjct:    1 MKLNISNPATGCQKKIEIDEEKRLRVLYEKRIAQEVDGDALGDEFKGYVFKITGGQDKQGFAMKQGVLTQGRVRLLMQKGTQGCRGYGMRKGERKRKSVRGCIVSHAISVLHLAIIKKGEAEIEGLTDEVKPRRLGPKRANHIRKLFNLSKDDDVRKYVIRREIAPK---KEGAKPISKAPKIQRLVTPLTLQRKRRRNALRLRSVLNSKAEAAEYEKLLAKKNRDERASRRSSRSRSKKSAA 240          
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A1X6NUQ2_PORUM (40S ribosomal protein S6 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUQ2_PORUM)

HSP 1 Score: 206 bits (525), Expect = 1.470e-63
Identity = 124/239 (51.88%), Postives = 148/239 (61.92%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRR 180
            MKLN+A+P TGAQK +DI+DEKKL+  YD RLAQE++G+ LGD++ GY+ +IMGGQDKQGFAMKQGVLTPNRVRLL+ KGVSGCRGYGMRKGER+RK+                                                           YVIRRE+P K   K+G KP SKAPKIQRLVTP T+ RKRRR A+    ++ASK AAAEYEK LA    EAR S + + SKR+
Sbjct:   46 MKLNVANPATGAQKMLDIEDEKKLRGFYDKRLAQEVEGDALGDEFAGYVLKIMGGQDKQGFAMKQGVLTPNRVRLLLHKGVSGCRGYGMRKGERRRKTVRGCIVSSSIAVLNVIIVKKGDAEVPGLTDVVIPRRLGPKRASKIRKLFNLSKEDDVRKYVIRREVPSK---KEGGKPISKAPKIQRLVTPQTLQRKRRRAAVTRKGVEASKEAAAEYEKRLALLKKEARASHRETASKRK 281          
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A7S3HX40_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HX40_9SPIT)

HSP 1 Score: 199 bits (506), Expect = 4.200e-61
Identity = 120/243 (49.38%), Postives = 147/243 (60.49%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRSTKA 184
            MKLN+A+P TG QK I+IDDEKKL+ LYD RLA E+ G DLGD++ GYIF++MGGQDKQGF MKQGVLT +RVRL+M KG  GCRGYGMRKGER RKS                                                           YVIRRE+P K   K+G  P SKAPKIQRLVTP+++ RKR R A+K +    +KA AAEY+KL+AQRN E+RE +   LS+R+S ++
Sbjct:   12 MKLNIANPSTGCQKLIEIDDEKKLRTLYDRRLAAEVDGSDLGDEFAGYIFKVMGGQDKQGFPMKQGVLTQDRVRLMMAKGDQGCRGYGMRKGERYRKSCRGCIISHNIAVLHLVILKKGDNEIEGLTDKQIPRRLGPKRASKIRKLFALSKEDDVRKYVIRREVPSK---KEGKAPTSKAPKIQRLVTPISLQRKRHRLAIKKSRQAKAKANAAEYQKLVAQRNKESREKKAEKLSQRKSQRS 251          
BLAST of Gcaud7498.t1 vs. uniprot
Match: M2XGN0_GALSU (40S ribosomal protein S6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XGN0_GALSU)

HSP 1 Score: 198 bits (504), Expect = 4.570e-61
Identity = 121/236 (51.27%), Postives = 143/236 (60.59%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLS 177
            MKLN+A+P TG QKQI++DDE+KL+  YD RLAQE+ G+ LGD++KGYIF+IMGGQDK+GFAMKQGVLT  RVRLL+ KG SGCRGYGMR GER+RKS                                                           YVIRREI  K   K+GAKP SKAPKIQRLVTP+ + RKRR+  LK  A + SK  AAEY KLL QR  E +E++K SLS
Sbjct:    1 MKLNIANPTTGCQKQIEVDDERKLRAFYDKRLAQEVPGDALGDEFKGYIFKIMGGQDKEGFAMKQGVLTTGRVRLLLKKGDSGCRGYGMRDGERRRKSVRGCIVSPDIAVLNLIILRKGEEDIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRKYVIRREITPK---KEGAKPYSKAPKIQRLVTPVRLQRKRRQKLLKQRAYEKSKREAAEYAKLLLQRRQEQKEAKKASLS 233          
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A6T6CX43_9RHOD (40S ribosomal protein S6 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CX43_9RHOD)

HSP 1 Score: 196 bits (497), Expect = 6.310e-60
Identity = 118/240 (49.17%), Postives = 147/240 (61.25%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARESRKTSLSKRRS 181
            MKLN+++P TG QK  ++DDE++L+  YD R+AQE++GE + +++ GY+ RI GGQDKQGFAMKQGVLTPNRV+LLM KGV G RGYGMRKGERKRKS                                                           YV+RREIP K   K+G K ++K+ KIQRLVTPLTI RKRRR ++K  A   SKA AAEYEKL+AQR  EAR+SR+ + SKR+S
Sbjct:    1 MKLNISNPMTGCQKMYEVDDERRLRAFYDKRIAQEVEGEHVAEEFDGYVLRITGGQDKQGFAMKQGVLTPNRVQLLMHKGVVGLRGYGMRKGERKRKSVRGCVVSHDISVLHLAIVRKGKEEVEGLTDKVIPRRLGPKRASKIRKLFNLAKDDDVRKYVVRREIPSK---KEGGKGRTKSAKIQRLVTPLTIQRKRRRKSMKKKAALKSKAEAAEYEKLVAQRAREARDSRRLTSSKRKS 237          
BLAST of Gcaud7498.t1 vs. uniprot
Match: A0A5J4YS93_PORPP (40S ribosomal protein S6 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS93_PORPP)

HSP 1 Score: 189 bits (480), Expect = 9.130e-57
Identity = 114/230 (49.57%), Postives = 141/230 (61.30%), Query Frame = 0
Query:    1 MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGED-LGDDYKGYIFRIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKS-----------------------------------------------------------YVIRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKASKAAAAEYEKLLAQRNAEARE 170
            MK N+A+P TG QK+++IDDE+ L++ YD R+A E++GE  LG+D+KGY+ +IMGGQDKQGFAMKQGVLTP RVRLLM KGV GCRG+ MRKGERKRKS                                                           YVIRREI  K   K+GAKP +KAPKIQRLVTP T+ RKRRR AL+  +++ SK   AEYEK++A+R+ EARE
Sbjct:    1 MKFNIANPATGCQKKVEIDDERLLRNFYDKRIAAEVEGEAALGEDWKGYMLKIMGGQDKQGFAMKQGVLTPQRVRLLMPKGVQGCRGFAMRKGERKRKSVRGCIVSHDISVLNLIITKKGDKDIDGLTDKVMPRRLGPKRANHIRKLFNLAKEDDVRKYVIRREITPK---KEGAKPYTKAPKIQRLVTPTTLQRKRRRAALRKKSVEQSKIQLAEYEKIIAKRSKEARE 227          
The following BLAST results are available for this feature:
BLAST of Gcaud7498.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3U5_9FLOR1.000e-10268.9840S ribosomal protein S6 n=1 Tax=Gracilariopsis ch... [more]
R7Q3M5_CHOCR1.710e-8763.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1E0BF42.800e-7154.55LOW QUALITY PROTEIN: 40S ribosomal protein S6-like... [more]
Q7XY98_GRIJA3.080e-7154.7340S ribosomal protein S6 n=1 Tax=Griffithsia japon... [more]
A0A7S1EQX1_9RHOD1.030e-6350.6240S ribosomal protein S6 n=1 Tax=Timspurckia oligo... [more]
A0A1X6NUQ2_PORUM1.470e-6351.8840S ribosomal protein S6 n=1 Tax=Porphyra umbilica... [more]
A0A7S3HX40_9SPIT4.200e-6149.38Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
M2XGN0_GALSU4.570e-6151.2740S ribosomal protein S6 n=1 Tax=Galdieria sulphur... [more]
A0A6T6CX43_9RHOD6.310e-6049.1740S ribosomal protein S6 n=1 Tax=Compsopogon caeru... [more]
A0A5J4YS93_PORPP9.130e-5749.5740S ribosomal protein S6 n=1 Tax=Porphyridium purp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001377Ribosomal protein S6eSMARTSM01405Ribosomal_S6e_2coord: 1..119
e-value: 2.8E-41
score: 153.1
IPR001377Ribosomal protein S6ePFAMPF01092Ribosomal_S6ecoord: 1..98
e-value: 5.8E-33
score: 113.3
IPR001377Ribosomal protein S6ePANTHERPTHR1150240S RIBOSOMAL PROTEIN S6coord: 1..98
coord: 97..183
NoneNo IPR availableGENE3D1.20.5.2650coord: 79..184
e-value: 7.4E-21
score: 76.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1132_length_13441_cov_4.389588contigNODE_1132_length_13441_cov_4.389588:1448..2397 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7498.t1Gcaud7498.t1Gracilaria caudata M_176_S67 malemRNANODE_1132_length_13441_cov_4.389588 1448..2397 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7498.t1 ID=Gcaud7498.t1|Name=Gcaud7498.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=187bp
MKLNLADPQTGAQKQIDIDDEKKLQHLYDMRLAQEIKGEDLGDDYKGYIF
RIMGGQDKQGFAMKQGVLTPNRVRLLMDKGVSGCRGYGMRKGERKRKSYV
IRREIPVKEGAKDGAKPKSKAPKIQRLVTPLTIHRKRRRYALKVAAIKAS
KAAAAEYEKLLAQRNAEARESRKTSLSKRRSTKAEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001377Ribosomal_S6e