Gcaud2378.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2378.t1
Unique NameGcaud2378.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4550_length_2178_cov_10.391471contigNODE_4550_length_2178_cov_10.391471:2..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO98645
PFAMsNa_Ca_ex
Max annot lvl3041|Chlorophyta
KEGG koko:K13751,ko:K13752
KEGG TC2.A.19.4,2.A.19.4.5
KEGG Pathwayko04740,map04740
Evalue4.2e-13
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota,389PH@33090|Viridiplantae,34NRX@3041|Chlorophyta
DescriptionBelongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
COG categoryPT
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2378Gcaud2378Gracilaria caudata M_176_S67 malegeneNODE_4550_length_2178_cov_10.391471 2..331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2378.t1.CDS1Gcaud2378.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4550_length_2178_cov_10.391471 2..331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2378.t1.exon1Gcaud2378.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4550_length_2178_cov_10.391471 2..331 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2378.t1.start1Gcaud2378.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4550_length_2178_cov_10.391471 329..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2378.t1Gcaud2378.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4550_length_2178_cov_10.391471 2..331 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=110bp
MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFS
NRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFLLATT
VLLLIVLAVR
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spliced messenger RNA

>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp|location=Sequence derived from alignment at NODE_4550_length_2178_cov_10.391471:2..331- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCAAGCGGCAAGTGTGATTGGTTGTTTGCTAGAAATCCCAGCAGC
TGTTATGGGAATGACGGTGCTTGCTGTCGGAATAAGCGTGCCGCAAGCTT
TGTTCGAGAAAGGTCTTGTCGAAGAAGAGGAGTGGAGATATTTGTTCAGC
AACCGATTTGGAAGTAATGTTTTTGACCTGTTCTTCGGTCTTGGGTTACC
ATGGTTCTTGGGTCATTTGACTCAGAAGGAACCTATTGCAATCACAGAGT
CCCCCATTACAACGGTGGTCCTTCCCATTATCTTCCTGCTTGCCACCACG
GTGCTGCTGCTGATTGTGCTTGCCGTGAGG
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protein sequence of Gcaud2378.t1

>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=110bp
MVQAASVIGCLLEIPAAVMGMTVLAVGISVPQALFEKGLVEEEEWRYLFS
NRFGSNVFDLFFGLGLPWFLGHLTQKEPIAITESPITTVVLPIIFLLATT
VLLLIVLAVR
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mRNA from alignment at NODE_4550_length_2178_cov_10.391471:2..331-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp|location=Sequence derived from alignment at NODE_4550_length_2178_cov_10.391471:2..331- (Gracilaria caudata M_176_S67 male)
ATGGTTCAAGCGGCAAGTGTGATTGGTTGTTTGCTAGAAATCCCAGCAGC
TGTTATGGGAATGACGGTGCTTGCTGTCGGAATAAGCGTGCCGCAAGCTT
TGTTCGAGAAAGGTCTTGTCGAAGAAGAGGAGTGGAGATATTTGTTCAGC
AACCGATTTGGAAGTAATGTTTTTGACCTGTTCTTCGGTCTTGGGTTACC
ATGGTTCTTGGGTCATTTGACTCAGAAGGAACCTATTGCAATCACAGAGT
CCCCCATTACAACGGTGGTCCTTCCCATTATCTTCCTGCTTGCCACCACG
GTGCTGCTGCTGATTGTGCTTGCCGTGAGG
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Coding sequence (CDS) from alignment at NODE_4550_length_2178_cov_10.391471:2..331-

>Gcaud2378.t1 ID=Gcaud2378.t1|Name=Gcaud2378.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=330bp|location=Sequence derived from alignment at NODE_4550_length_2178_cov_10.391471:2..331- (Gracilaria caudata M_176_S67 male)
ATGGTTCAAGCGGCAAGTGTGATTGGTTGTTTGCTAGAAATCCCAGCAGC
TGTTATGGGAATGACGGTGCTTGCTGTCGGAATAAGCGTGCCGCAAGCTT
TGTTCGAGAAAGGTCTTGTCGAAGAAGAGGAGTGGAGATATTTGTTCAGC
AACCGATTTGGAAGTAATGTTTTTGACCTGTTCTTCGGTCTTGGGTTACC
ATGGTTCTTGGGTCATTTGACTCAGAAGGAACCTATTGCAATCACAGAGT
CCCCCATTACAACGGTGGTCCTTCCCATTATCTTCCTGCTTGCCACCACG
GTGCTGCTGCTGATTGTGCTTGCCGTGAGG
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