|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 588596.U9V655 |
| Preferred name | fcp1 |
| PFAMs | BRCT,NIF,PTCB-BRCT |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K15732 |
| GOs | GO:0000428,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008420,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016311,GO:0016591,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141 |
| Evalue | 1.56e-48 |
| EggNOG OGs | COG5190@1|root,KOG0323@2759|Eukaryota,38IPM@33154|Opisthokonta,3NXKY@4751|Fungi |
| EC | 3.1.3.16 |
| Description | RNA polymerase II |
| COG category | L |
| BRITE | ko00000,ko01000,ko01009,ko03021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2110.t1.stop1 | Gcaud2110.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_112_length_49450_cov_4.312142 43030..43032 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2110.t1.exon1 | Gcaud2110.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_112_length_49450_cov_4.312142 43030..45465 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2110.t1.start1 | Gcaud2110.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_112_length_49450_cov_4.312142 45463..45465 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2110.t1 ID=Gcaud2110.t1|Name=Gcaud2110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=812bp MRGFKHQNVPLPPRILEHPQQWRLERWLVQPGARVHREQRIATFRSSSNA ALEYAYAPRSGTLVNTNLQQNCPVDPSLSPLARIEFCPHSVVFKGICAVC GETAHSLHFAETKNTVERIPVAYESEQLAVSRAEAESRSSVNARHLLESR RLSLVLDLDHTLLHATDDARAPEIISCFPDGVDIQSVKAFHLGAATAHPN NSARMHVKLRPHLAEFLTRVSSKFELHIYTMGTRAYAAKIADIIDPHKKL FGGRITSREDFAEGRWNQKSIQRLFPCDDSMVLIVDDREDVWISATGQSF MPNLIRAEPYHFWDGLHEVYSRAFTTYAVDPRGTPEAAAARANQQNETQL SNKLHASKPSQNGHEVKHTNGMVSHAETLRKRNEASGRPQSNREKACMWE NGNRPIRTDIVAGVSNVHTSRHVSETEVVGVALNGISQTVDQKEQNGSSP HNANHDSNKPLNKEKEPPAPDQKHRTDCPERENPTLLVSSNGVAAERVGS LSLEKVKSEHKTVVRTQDQELQNGVSEGKELKQSASSEGDSAQTNVSFRG VFTDLVHKWWKKETHPKSSRHLLRLADVLEECHSRFFSIADQARKECGAV RNGTSNKRFRAPADVKKILANVRREILRECVVSFTGVIPTGVDPRKSALW NLAERLGAQCSVEFENGCTTHLVASEERGRNTRKYKRAVESGSAFVVSPS WLESCAFDFEKQDEFEYQLDRDNRFSTSEQLQSWIRSNFAKAETACRKRS ALHIQDKQAGDDGHMPKRRRLDSPTASVRESGSRSPVADGAMLSILSQDE IGAAIEAAFAE* back to topspliced messenger RNA >Gcaud2110.t1 ID=Gcaud2110.t1|Name=Gcaud2110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:43030..45465- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTGGATTCAAGCACCAAAATGTACCACTTCCACCGCGAATCCTTGA GCACCCTCAACAATGGCGTCTGGAGCGTTGGCTAGTACAACCCGGCGCCC GCGTGCACCGCGAGCAGCGAATAGCCACCTTCAGATCCTCATCAAACGCC GCGCTTGAATATGCGTATGCGCCGCGCTCCGGAACCTTAGTCAACACCAA TCTGCAACAAAACTGCCCTGTAGATCCGAGTCTTTCACCCCTTGCGCGCA TTGAGTTCTGTCCTCATTCTGTAGTCTTCAAGGGCATTTGCGCCGTGTGC GGAGAAACTGCCCACTCTCTACACTTTGCCGAGACAAAGAACACGGTGGA GAGAATTCCCGTGGCGTATGAATCGGAGCAACTTGCCGTGTCAAGGGCTG AGGCCGAGTCCAGGTCATCTGTTAATGCACGACATCTACTCGAGTCGCGT CGTCTTTCCCTCGTCCTTGACCTCGATCACACCCTTCTGCATGCCACCGA CGACGCGAGAGCGCCCGAAATCATCTCTTGCTTCCCAGACGGCGTTGACA TCCAATCGGTGAAAGCGTTCCATCTGGGCGCTGCCACCGCACATCCAAAT AACTCCGCTCGCATGCACGTCAAACTTCGACCACATCTCGCCGAGTTTCT CACACGCGTTTCGAGCAAGTTTGAGCTTCACATCTACACCATGGGCACGC GCGCTTACGCCGCCAAGATCGCCGACATCATCGATCCTCATAAAAAGCTG TTCGGCGGTCGTATTACCAGTCGAGAGGACTTTGCCGAAGGTCGTTGGAA TCAGAAGAGTATTCAACGTCTGTTTCCATGCGACGACTCCATGGTGCTCA TTGTGGACGACAGAGAGGATGTTTGGATTTCGGCTACAGGTCAGTCCTTC ATGCCAAATCTTATCAGGGCAGAGCCGTACCACTTTTGGGATGGTTTGCA CGAGGTTTACAGTCGAGCGTTTACGACGTACGCCGTTGATCCGAGGGGGA CTCCGGAAGCTGCTGCCGCACGAGCAAACCAGCAAAATGAGACACAGCTC TCAAACAAGCTTCACGCCTCAAAGCCATCCCAGAATGGACATGAGGTAAA GCACACCAACGGTATGGTTTCTCACGCCGAAACGCTACGCAAACGGAATG AAGCAAGCGGCAGGCCTCAGTCAAATCGCGAAAAAGCATGCATGTGGGAG AATGGGAATCGGCCCATAAGAACAGATATCGTGGCGGGTGTCAGTAATGT GCACACGTCCAGGCACGTCAGTGAAACAGAGGTAGTAGGTGTAGCACTCA ATGGGATTTCCCAGACTGTAGATCAAAAGGAACAAAACGGATCTTCACCC CATAATGCCAACCATGACAGTAACAAACCGTTAAACAAAGAAAAGGAACC ACCCGCACCGGACCAAAAGCACCGCACGGACTGCCCGGAGCGCGAAAACC CCACTCTGCTCGTCTCGTCAAACGGCGTGGCGGCAGAAAGAGTTGGCTCC TTGTCTCTTGAGAAAGTGAAGTCAGAACACAAGACTGTTGTACGCACACA GGACCAAGAGCTACAAAACGGGGTTTCGGAAGGAAAAGAACTCAAGCAGT CTGCTTCTTCAGAAGGAGATTCGGCGCAAACGAACGTTTCCTTTCGTGGT GTGTTTACTGATCTGGTGCACAAGTGGTGGAAGAAAGAAACACATCCGAA AAGCTCTAGACACCTACTAAGACTGGCTGACGTGCTTGAGGAGTGCCACT CAAGGTTCTTCTCCATCGCAGACCAGGCTAGAAAAGAGTGTGGCGCCGTA CGTAATGGGACATCAAACAAACGTTTTAGAGCGCCAGCGGATGTGAAGAA AATTCTAGCAAACGTGCGAAGAGAGATTCTTCGTGAGTGCGTGGTGAGTT TCACCGGTGTGATACCGACGGGCGTCGACCCGCGTAAATCAGCGCTGTGG AATCTTGCTGAGCGACTCGGCGCACAATGCTCCGTAGAGTTTGAGAACGG ATGCACGACGCACCTGGTTGCGTCCGAAGAACGAGGTAGGAATACCAGAA AATATAAACGAGCCGTGGAAAGTGGGTCTGCTTTTGTGGTTTCGCCGTCG TGGCTTGAGAGTTGTGCGTTCGATTTTGAGAAACAAGATGAGTTTGAGTA CCAACTTGACAGAGACAACAGGTTCAGCACCTCTGAACAGCTGCAGTCAT GGATTCGCTCTAACTTTGCCAAGGCAGAAACGGCGTGTCGCAAACGAAGT GCGCTACACATTCAGGACAAACAGGCGGGGGATGACGGACACATGCCGAA GAGGAGGAGGCTGGACTCGCCCACCGCCAGCGTAAGGGAAAGTGGCAGCC GTTCGCCCGTTGCTGATGGTGCGATGCTATCGATTCTTTCGCAGGACGAA ATCGGAGCGGCCATCGAGGCGGCGTTTGCGGAGTAA back to topprotein sequence of Gcaud2110.t1 >Gcaud2110.t1 ID=Gcaud2110.t1|Name=Gcaud2110.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=812bp
MRGFKHQNVPLPPRILEHPQQWRLERWLVQPGARVHREQRIATFRSSSNA ALEYAYAPRSGTLVNTNLQQNCPVDPSLSPLARIEFCPHSVVFKGICAVC GETAHSLHFAETKNTVERIPVAYESEQLAVSRAEAESRSSVNARHLLESR RLSLVLDLDHTLLHATDDARAPEIISCFPDGVDIQSVKAFHLGAATAHPN NSARMHVKLRPHLAEFLTRVSSKFELHIYTMGTRAYAAKIADIIDPHKKL FGGRITSREDFAEGRWNQKSIQRLFPCDDSMVLIVDDREDVWISATGQSF MPNLIRAEPYHFWDGLHEVYSRAFTTYAVDPRGTPEAAAARANQQNETQL SNKLHASKPSQNGHEVKHTNGMVSHAETLRKRNEASGRPQSNREKACMWE NGNRPIRTDIVAGVSNVHTSRHVSETEVVGVALNGISQTVDQKEQNGSSP HNANHDSNKPLNKEKEPPAPDQKHRTDCPERENPTLLVSSNGVAAERVGS LSLEKVKSEHKTVVRTQDQELQNGVSEGKELKQSASSEGDSAQTNVSFRG VFTDLVHKWWKKETHPKSSRHLLRLADVLEECHSRFFSIADQARKECGAV RNGTSNKRFRAPADVKKILANVRREILRECVVSFTGVIPTGVDPRKSALW NLAERLGAQCSVEFENGCTTHLVASEERGRNTRKYKRAVESGSAFVVSPS WLESCAFDFEKQDEFEYQLDRDNRFSTSEQLQSWIRSNFAKAETACRKRS ALHIQDKQAGDDGHMPKRRRLDSPTASVRESGSRSPVADGAMLSILSQDE IGAAIEAAFAE* back to topmRNA from alignment at NODE_112_length_49450_cov_4.312142:43030..45465- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2110.t1 ID=Gcaud2110.t1|Name=Gcaud2110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:43030..45465- (Gracilaria caudata M_176_S67 male) ATGCGTGGATTCAAGCACCAAAATGTACCACTTCCACCGCGAATCCTTGA
GCACCCTCAACAATGGCGTCTGGAGCGTTGGCTAGTACAACCCGGCGCCC
GCGTGCACCGCGAGCAGCGAATAGCCACCTTCAGATCCTCATCAAACGCC
GCGCTTGAATATGCGTATGCGCCGCGCTCCGGAACCTTAGTCAACACCAA
TCTGCAACAAAACTGCCCTGTAGATCCGAGTCTTTCACCCCTTGCGCGCA
TTGAGTTCTGTCCTCATTCTGTAGTCTTCAAGGGCATTTGCGCCGTGTGC
GGAGAAACTGCCCACTCTCTACACTTTGCCGAGACAAAGAACACGGTGGA
GAGAATTCCCGTGGCGTATGAATCGGAGCAACTTGCCGTGTCAAGGGCTG
AGGCCGAGTCCAGGTCATCTGTTAATGCACGACATCTACTCGAGTCGCGT
CGTCTTTCCCTCGTCCTTGACCTCGATCACACCCTTCTGCATGCCACCGA
CGACGCGAGAGCGCCCGAAATCATCTCTTGCTTCCCAGACGGCGTTGACA
TCCAATCGGTGAAAGCGTTCCATCTGGGCGCTGCCACCGCACATCCAAAT
AACTCCGCTCGCATGCACGTCAAACTTCGACCACATCTCGCCGAGTTTCT
CACACGCGTTTCGAGCAAGTTTGAGCTTCACATCTACACCATGGGCACGC
GCGCTTACGCCGCCAAGATCGCCGACATCATCGATCCTCATAAAAAGCTG
TTCGGCGGTCGTATTACCAGTCGAGAGGACTTTGCCGAAGGTCGTTGGAA
TCAGAAGAGTATTCAACGTCTGTTTCCATGCGACGACTCCATGGTGCTCA
TTGTGGACGACAGAGAGGATGTTTGGATTTCGGCTACAGGTCAGTCCTTC
ATGCCAAATCTTATCAGGGCAGAGCCGTACCACTTTTGGGATGGTTTGCA
CGAGGTTTACAGTCGAGCGTTTACGACGTACGCCGTTGATCCGAGGGGGA
CTCCGGAAGCTGCTGCCGCACGAGCAAACCAGCAAAATGAGACACAGCTC
TCAAACAAGCTTCACGCCTCAAAGCCATCCCAGAATGGACATGAGGTAAA
GCACACCAACGGTATGGTTTCTCACGCCGAAACGCTACGCAAACGGAATG
AAGCAAGCGGCAGGCCTCAGTCAAATCGCGAAAAAGCATGCATGTGGGAG
AATGGGAATCGGCCCATAAGAACAGATATCGTGGCGGGTGTCAGTAATGT
GCACACGTCCAGGCACGTCAGTGAAACAGAGGTAGTAGGTGTAGCACTCA
ATGGGATTTCCCAGACTGTAGATCAAAAGGAACAAAACGGATCTTCACCC
CATAATGCCAACCATGACAGTAACAAACCGTTAAACAAAGAAAAGGAACC
ACCCGCACCGGACCAAAAGCACCGCACGGACTGCCCGGAGCGCGAAAACC
CCACTCTGCTCGTCTCGTCAAACGGCGTGGCGGCAGAAAGAGTTGGCTCC
TTGTCTCTTGAGAAAGTGAAGTCAGAACACAAGACTGTTGTACGCACACA
GGACCAAGAGCTACAAAACGGGGTTTCGGAAGGAAAAGAACTCAAGCAGT
CTGCTTCTTCAGAAGGAGATTCGGCGCAAACGAACGTTTCCTTTCGTGGT
GTGTTTACTGATCTGGTGCACAAGTGGTGGAAGAAAGAAACACATCCGAA
AAGCTCTAGACACCTACTAAGACTGGCTGACGTGCTTGAGGAGTGCCACT
CAAGGTTCTTCTCCATCGCAGACCAGGCTAGAAAAGAGTGTGGCGCCGTA
CGTAATGGGACATCAAACAAACGTTTTAGAGCGCCAGCGGATGTGAAGAA
AATTCTAGCAAACGTGCGAAGAGAGATTCTTCGTGAGTGCGTGGTGAGTT
TCACCGGTGTGATACCGACGGGCGTCGACCCGCGTAAATCAGCGCTGTGG
AATCTTGCTGAGCGACTCGGCGCACAATGCTCCGTAGAGTTTGAGAACGG
ATGCACGACGCACCTGGTTGCGTCCGAAGAACGAGGTAGGAATACCAGAA
AATATAAACGAGCCGTGGAAAGTGGGTCTGCTTTTGTGGTTTCGCCGTCG
TGGCTTGAGAGTTGTGCGTTCGATTTTGAGAAACAAGATGAGTTTGAGTA
CCAACTTGACAGAGACAACAGGTTCAGCACCTCTGAACAGCTGCAGTCAT
GGATTCGCTCTAACTTTGCCAAGGCAGAAACGGCGTGTCGCAAACGAAGT
GCGCTACACATTCAGGACAAACAGGCGGGGGATGACGGACACATGCCGAA
GAGGAGGAGGCTGGACTCGCCCACCGCCAGCGTAAGGGAAAGTGGCAGCC
GTTCGCCCGTTGCTGATGGTGCGATGCTATCGATTCTTTCGCAGGACGAA
ATCGGAGCGGCCATCGAGGCGGCGTTTGCGGAGTAA back to topCoding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:43030..45465- >Gcaud2110.t1 ID=Gcaud2110.t1|Name=Gcaud2110.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2436bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:43030..45465- (Gracilaria caudata M_176_S67 male) ATGCGTGGATTCAAGCACCAAAATGTACCACTTCCACCGCGAATCCTTGA GCACCCTCAACAATGGCGTCTGGAGCGTTGGCTAGTACAACCCGGCGCCC GCGTGCACCGCGAGCAGCGAATAGCCACCTTCAGATCCTCATCAAACGCC GCGCTTGAATATGCGTATGCGCCGCGCTCCGGAACCTTAGTCAACACCAA TCTGCAACAAAACTGCCCTGTAGATCCGAGTCTTTCACCCCTTGCGCGCA TTGAGTTCTGTCCTCATTCTGTAGTCTTCAAGGGCATTTGCGCCGTGTGC GGAGAAACTGCCCACTCTCTACACTTTGCCGAGACAAAGAACACGGTGGA GAGAATTCCCGTGGCGTATGAATCGGAGCAACTTGCCGTGTCAAGGGCTG AGGCCGAGTCCAGGTCATCTGTTAATGCACGACATCTACTCGAGTCGCGT CGTCTTTCCCTCGTCCTTGACCTCGATCACACCCTTCTGCATGCCACCGA CGACGCGAGAGCGCCCGAAATCATCTCTTGCTTCCCAGACGGCGTTGACA TCCAATCGGTGAAAGCGTTCCATCTGGGCGCTGCCACCGCACATCCAAAT AACTCCGCTCGCATGCACGTCAAACTTCGACCACATCTCGCCGAGTTTCT CACACGCGTTTCGAGCAAGTTTGAGCTTCACATCTACACCATGGGCACGC GCGCTTACGCCGCCAAGATCGCCGACATCATCGATCCTCATAAAAAGCTG TTCGGCGGTCGTATTACCAGTCGAGAGGACTTTGCCGAAGGTCGTTGGAA TCAGAAGAGTATTCAACGTCTGTTTCCATGCGACGACTCCATGGTGCTCA TTGTGGACGACAGAGAGGATGTTTGGATTTCGGCTACAGGTCAGTCCTTC ATGCCAAATCTTATCAGGGCAGAGCCGTACCACTTTTGGGATGGTTTGCA CGAGGTTTACAGTCGAGCGTTTACGACGTACGCCGTTGATCCGAGGGGGA CTCCGGAAGCTGCTGCCGCACGAGCAAACCAGCAAAATGAGACACAGCTC TCAAACAAGCTTCACGCCTCAAAGCCATCCCAGAATGGACATGAGGTAAA GCACACCAACGGTATGGTTTCTCACGCCGAAACGCTACGCAAACGGAATG AAGCAAGCGGCAGGCCTCAGTCAAATCGCGAAAAAGCATGCATGTGGGAG AATGGGAATCGGCCCATAAGAACAGATATCGTGGCGGGTGTCAGTAATGT GCACACGTCCAGGCACGTCAGTGAAACAGAGGTAGTAGGTGTAGCACTCA ATGGGATTTCCCAGACTGTAGATCAAAAGGAACAAAACGGATCTTCACCC CATAATGCCAACCATGACAGTAACAAACCGTTAAACAAAGAAAAGGAACC ACCCGCACCGGACCAAAAGCACCGCACGGACTGCCCGGAGCGCGAAAACC CCACTCTGCTCGTCTCGTCAAACGGCGTGGCGGCAGAAAGAGTTGGCTCC TTGTCTCTTGAGAAAGTGAAGTCAGAACACAAGACTGTTGTACGCACACA GGACCAAGAGCTACAAAACGGGGTTTCGGAAGGAAAAGAACTCAAGCAGT CTGCTTCTTCAGAAGGAGATTCGGCGCAAACGAACGTTTCCTTTCGTGGT GTGTTTACTGATCTGGTGCACAAGTGGTGGAAGAAAGAAACACATCCGAA AAGCTCTAGACACCTACTAAGACTGGCTGACGTGCTTGAGGAGTGCCACT CAAGGTTCTTCTCCATCGCAGACCAGGCTAGAAAAGAGTGTGGCGCCGTA CGTAATGGGACATCAAACAAACGTTTTAGAGCGCCAGCGGATGTGAAGAA AATTCTAGCAAACGTGCGAAGAGAGATTCTTCGTGAGTGCGTGGTGAGTT TCACCGGTGTGATACCGACGGGCGTCGACCCGCGTAAATCAGCGCTGTGG AATCTTGCTGAGCGACTCGGCGCACAATGCTCCGTAGAGTTTGAGAACGG ATGCACGACGCACCTGGTTGCGTCCGAAGAACGAGGTAGGAATACCAGAA AATATAAACGAGCCGTGGAAAGTGGGTCTGCTTTTGTGGTTTCGCCGTCG TGGCTTGAGAGTTGTGCGTTCGATTTTGAGAAACAAGATGAGTTTGAGTA CCAACTTGACAGAGACAACAGGTTCAGCACCTCTGAACAGCTGCAGTCAT GGATTCGCTCTAACTTTGCCAAGGCAGAAACGGCGTGTCGCAAACGAAGT GCGCTACACATTCAGGACAAACAGGCGGGGGATGACGGACACATGCCGAA GAGGAGGAGGCTGGACTCGCCCACCGCCAGCGTAAGGGAAAGTGGCAGCC GTTCGCCCGTTGCTGATGGTGCGATGCTATCGATTCTTTCGCAGGACGAA ATCGGAGCGGCCATCGAGGCGGCGTTTGCGGAGTAA back to top
|