Gcaud2508.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2508.t1
Unique NameGcaud2508.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length154
Homology
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A2V3IIL7_9FLOR (50S ribosomal protein L17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIL7_9FLOR)

HSP 1 Score: 238 bits (607), Expect = 1.830e-78
Identity = 122/152 (80.26%), Postives = 135/152 (88.82%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPPTHPGLAVAL 152
            MKHRVALRKLSR+ SHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTL A+RRVNG+V T+ ASKKVF++LAPRF  R GGYTRVLKTRFRRGDCAPMA+IEW+QT++SILTPEQ++RK QRKT+      T PGL V L
Sbjct:    1 MKHRVALRKLSRSSSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLVARRRVNGFVMTNEASKKVFVDLAPRFADRCGGYTRVLKTRFRRGDCAPMAIIEWSQTERSILTPEQLLRKEQRKTKHRRQSATPPGLGVVL 152          
BLAST of Gcaud2508.t1 vs. uniprot
Match: R7QG00_CHOCR (Mitochondrial ribosomal protein L17 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG00_CHOCR)

HSP 1 Score: 196 bits (499), Expect = 5.280e-62
Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPP-THPGLAVAL 152
            MKHR+ LRKLSRT +HR+ALFRNQVTSLIEHERIETTVAKAKELRRIAD++IT  K+ TL A R V+GYVQT  A +K+F+ELAPRF  R GGYTRVL+TR RRGDCAPMAVIE ++TD SILT EQ++++  RK++   +P  T P LA AL
Sbjct:    1 MKHRIKLRKLSRTSAHRRALFRNQVTSLIEHERIETTVAKAKELRRIADKLITTAKQGTLRAHRAVDGYVQTKMARRKLFVELAPRFMGRPGGYTRVLRTRLRRGDCAPMAVIELSETDNSILTAEQLVQREARKSKYRRNPELTPPSLANAL 153          
BLAST of Gcaud2508.t1 vs. uniprot
Match: UPI001E1D8055 (50S ribosomal protein L17-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8055)

HSP 1 Score: 170 bits (431), Expect = 1.050e-51
Identity = 91/152 (59.87%), Postives = 114/152 (75.00%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPPTHPGLAVAL 152
            M+HR A RKLSR   HR+AL RN +TSLIEHERIETTVAKAKELRR+ADR++T  K  TL+ +R + GYVQT  A++K+  E+ PRF  R GGYTRVL+TR RRGDCAP+AV+E+++T  SILT +Q+ RK  RKT+   +     GLA AL
Sbjct:    1 MRHRSAYRKLSRDTGHRRALLRNLITSLIEHERIETTVAKAKELRRVADRMVTHSKNGTLHGRRAITGYVQTREAARKLITEIGPRFADRPGGYTRVLRTRNRRGDCAPLAVVEFSETANSILTFDQLERKHLRKTKHRRA---SMGLADAL 149          
BLAST of Gcaud2508.t1 vs. uniprot
Match: UPI00190356BD (50S ribosomal protein L17 n=2 Tax=Rhodovibrio TaxID=85274 RepID=UPI00190356BD)

HSP 1 Score: 138 bits (347), Expect = 4.400e-39
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTD 119
            M+H  + RKL+RT SHRKALF N  TSLI+HE+I TT+ KAKELRRI D++IT+GKK  L+A+RR    ++ +  +KK+F EL PR++ R GGYTRVLK  FR+GDCAPMAVIE    D
Sbjct:    1 MRHMKSGRKLNRTQSHRKALFANMATSLIKHEQIVTTLPKAKELRRITDKLITMGKKGDLHARRRAASQLRDERMAKKLFDELGPRYKDRPGGYTRVLKAGFRQGDCAPMAVIELVDRD 119          
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A7C7S7M3_9BACT (50S ribosomal protein L17 n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A7C7S7M3_9BACT)

HSP 1 Score: 139 bits (349), Expect = 5.380e-39
Identity = 70/134 (52.24%), Postives = 97/134 (72.39%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQR 134
            M+HR+A RKL R GSHR+AL+RN VTS + HERIETT AK KE+R IADR+ITLGKK  L+++R  N Y+ +      +F ++APRF  R+GGYTR++KTR R GD APM ++E T+T+ ++    Q+  K ++
Sbjct:    1 MRHRMAGRKLGRNGSHRRALYRNLVTSFLRHERIETTEAKGKEIRAIADRMITLGKKGDLHSRRLANAYLMSRGVVSALFEDIAPRFSERNGGYTRLIKTRIRYGDRAPMVILELTETEATL---PQVSEKEEK 131          
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A2D6JXP6_9PROT (50S ribosomal protein L17 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D6JXP6_9PROT)

HSP 1 Score: 137 bits (344), Expect = 1.370e-38
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTD 119
            M+HR   RKL+RT SHRKA+F N   SL+ HE+I+TT+ KAK+LRR+ADR+ITLGK+ TL+A+RR + Y++ D A  K+F  LA R++ RSGGYTRV+K  FR GD APMAVIE    D
Sbjct:    1 MRHRHGARKLNRTSSHRKAMFSNMAVSLLTHEQIKTTLPKAKDLRRVADRMITLGKRGTLHARRRAHSYLRDDSAVSKLFGVLAERYKERSGGYTRVMKAGFRYGDNAPMAVIELVDRD 119          
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A7C3IXQ2_9DELT (50S ribosomal protein L17 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3IXQ2_9DELT)

HSP 1 Score: 136 bits (343), Expect = 1.680e-38
Identity = 71/128 (55.47%), Postives = 99/128 (77.34%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQ-TDKSILTPEQ 127
            M+H  A RKL+RT +HRKALFRN  T+L+E E+I+TT AKAKELRRI DR++TLGK+ TL+A+R+   +++T  A +K+F ELAPRF  R+GGYTRVLK + R GD AP++++E+T+ T+     P+Q
Sbjct:    1 MRHLKAGRKLNRTKAHRKALFRNLATALVEKEQIKTTDAKAKELRRIVDRLVTLGKRGTLHARRQAAAFLRTRAAVRKLFDELAPRFSQRNGGYTRVLKFQRRAGDAAPLSIVEFTERTESGAPAPQQ 128          
BLAST of Gcaud2508.t1 vs. uniprot
Match: M1VMQ6_CYAM1 (Mitochondrial ribosomal protein L17 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VMQ6_CYAM1)

HSP 1 Score: 135 bits (340), Expect = 4.780e-38
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQTDKSILTP--EQIMRKRQRKT 136
            MKHR+ LRKL R  +HR AL RN V+SLIEHE IETTVAKAKELRR+AD+++TLGK+    ++ R  G+V+  H  +K+F  LA R+  R+GGYTRV+++R RRGD APMA++E   + K ++    E   R  QR++
Sbjct:    1 MKHRINLRKLGRDSAHRLALLRNLVSSLIEHESIETTVAKAKELRRVADKMVTLGKRGDGLSRIRALGFVRGPHLVQKLFRTLAERYRERNGGYTRVMRSRNRRGDNAPMAIVELVDSPKGVIRRPLEHYQRSEQRQS 138          
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A3M0ZJT4_9BACT (50S ribosomal protein L17 n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZJT4_9BACT)

HSP 1 Score: 135 bits (339), Expect = 5.160e-38
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQ 117
            M+HR   RKL R  +HR+A+FRN VTSLI H R+ TT AKAKELRR ADR++TLGKKQTL A+RR    V+TD A +++F E+APRF +R G YTR++K + RRGD AP++V+E+ +
Sbjct:    1 MRHRKTGRKLGRNSAHRRAMFRNMVTSLIMHGRVTTTDAKAKELRRWADRVVTLGKKQTLAARRRARRIVRTDAALRRLFDEIAPRFANRPGEYTRIVKVQRRRGDAAPLSVVEFVE 117          
BLAST of Gcaud2508.t1 vs. uniprot
Match: A0A3M1L2S7_9DELT (50S ribosomal protein L17 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1L2S7_9DELT)

HSP 1 Score: 134 bits (338), Expect = 6.680e-38
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 0
Query:    1 MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADRIITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKTRFRRGDCAPMAVIEWTQ 117
            M+H  A R+L R  +HR+A+FRN VTSLI + R+ TT AKAKELRR ADR++TLGKKQTL A+RR    V+TD A +++F E+APRF +R GGYTR++K   RRGD AP++V+E T+
Sbjct:    1 MRHLKAGRRLGRNSAHRRAMFRNMVTSLIMNGRVTTTDAKAKELRRWADRVVTLGKKQTLAARRRARRIVRTDEALRRLFNEIAPRFANRPGGYTRIIKVARRRGDAAPLSVVELTE 117          
The following BLAST results are available for this feature:
BLAST of Gcaud2508.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIL7_9FLOR1.830e-7880.2650S ribosomal protein L17 n=1 Tax=Gracilariopsis c... [more]
R7QG00_CHOCR5.280e-6268.63Mitochondrial ribosomal protein L17 n=1 Tax=Chondr... [more]
UPI001E1D80551.050e-5159.8750S ribosomal protein L17-like n=1 Tax=Mercenaria ... [more]
UPI00190356BD4.400e-3959.6650S ribosomal protein L17 n=2 Tax=Rhodovibrio TaxI... [more]
A0A7C7S7M3_9BACT5.380e-3952.2450S ribosomal protein L17 n=1 Tax=Nitrospira sp. T... [more]
A0A2D6JXP6_9PROT1.370e-3858.8250S ribosomal protein L17 n=2 Tax=Alphaproteobacte... [more]
A0A7C3IXQ2_9DELT1.680e-3855.4750S ribosomal protein L17 n=1 Tax=Deltaproteobacte... [more]
M1VMQ6_CYAM14.780e-3852.17Mitochondrial ribosomal protein L17 n=1 Tax=Cyanid... [more]
A0A3M0ZJT4_9BACT5.160e-3858.1250S ribosomal protein L17 n=1 Tax=Candidatus Dadab... [more]
A0A3M1L2S7_9DELT6.680e-3858.1250S ribosomal protein L17 n=1 Tax=Deltaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 7..115
e-value: 1.7E-43
score: 145.5
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 20..115
e-value: 1.3E-35
score: 122.2
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 1..133
IPR000456Ribosomal protein L17PROSITEPS01167RIBOSOMAL_L17coord: 34..56
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 5..116
score: 25.535732
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 1..116
e-value: 1.5E-47
score: 162.7
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 1..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:14794..15255 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1Gcaud2508.t1Gracilaria caudata M_176_S67 malemRNANODE_441_length_25217_cov_4.561570 14794..15255 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=154bp
MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADR
IITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKT
RFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPPTHPGLAV
ALH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
IPR036373Ribosomal_L17_sf