Gcaud2508.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2508.t1
Unique NameGcaud2508.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:14794..15255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089552.KI911559_gene2991
Preferred namerplQ
PFAMsRibosomal_L17
Max annot lvl204441|Rhodospirillales
KEGG koko:K02879
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue1.77e-38
EggNOG OGsCOG0203@1|root,COG0203@2|Bacteria,1RCWN@1224|Proteobacteria,2U749@28211|Alphaproteobacteria,2JS9R@204441|Rhodospirillales
DescriptionRibosomal protein L17
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2508Gcaud2508Gracilaria caudata M_176_S67 malegeneNODE_441_length_25217_cov_4.561570 14794..15255 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1.start1Gcaud2508.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_441_length_25217_cov_4.561570 14794..14796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1.CDS1Gcaud2508.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_441_length_25217_cov_4.561570 14794..15255 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1.exon1Gcaud2508.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_441_length_25217_cov_4.561570 14794..15255 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1.stop1Gcaud2508.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_441_length_25217_cov_4.561570 15253..15255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2508.t1Gcaud2508.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_441_length_25217_cov_4.561570 14794..15255 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=154bp
MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADR
IITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKT
RFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPPTHPGLAV
ALH*
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spliced messenger RNA

>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:14794..15255+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACATAGAGTGGCGCTGCGAAAGCTCTCGCGAACCGGCTCGCATCG
GAAGGCGCTGTTCCGCAATCAGGTCACGTCTCTCATCGAGCACGAGCGCA
TCGAAACCACCGTGGCAAAGGCGAAGGAGCTACGTCGCATCGCAGATCGC
ATCATAACGCTGGGAAAGAAGCAAACACTCAACGCAAAACGACGTGTCAA
CGGCTACGTGCAGACCGATCACGCCTCCAAAAAGGTGTTCATGGAGCTTG
CGCCGCGCTTTGAGCACAGAAGTGGCGGCTACACTCGGGTGCTCAAGACA
CGCTTTAGAAGAGGCGACTGTGCGCCCATGGCTGTCATCGAATGGACGCA
GACGGACAAATCTATCCTCACTCCGGAACAGATTATGAGGAAGCGACAAA
GGAAGACAAGGTCTTCTTTGTCGCCACCCACTCATCCCGGATTGGCGGTC
GCGTTGCACTGA
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protein sequence of Gcaud2508.t1

>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=154bp
MKHRVALRKLSRTGSHRKALFRNQVTSLIEHERIETTVAKAKELRRIADR
IITLGKKQTLNAKRRVNGYVQTDHASKKVFMELAPRFEHRSGGYTRVLKT
RFRRGDCAPMAVIEWTQTDKSILTPEQIMRKRQRKTRSSLSPPTHPGLAV
ALH*
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mRNA from alignment at NODE_441_length_25217_cov_4.561570:14794..15255+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:14794..15255+ (Gracilaria caudata M_176_S67 male)
ATGAAACATAGAGTGGCGCTGCGAAAGCTCTCGCGAACCGGCTCGCATCG
GAAGGCGCTGTTCCGCAATCAGGTCACGTCTCTCATCGAGCACGAGCGCA
TCGAAACCACCGTGGCAAAGGCGAAGGAGCTACGTCGCATCGCAGATCGC
ATCATAACGCTGGGAAAGAAGCAAACACTCAACGCAAAACGACGTGTCAA
CGGCTACGTGCAGACCGATCACGCCTCCAAAAAGGTGTTCATGGAGCTTG
CGCCGCGCTTTGAGCACAGAAGTGGCGGCTACACTCGGGTGCTCAAGACA
CGCTTTAGAAGAGGCGACTGTGCGCCCATGGCTGTCATCGAATGGACGCA
GACGGACAAATCTATCCTCACTCCGGAACAGATTATGAGGAAGCGACAAA
GGAAGACAAGGTCTTCTTTGTCGCCACCCACTCATCCCGGATTGGCGGTC
GCGTTGCACTGA
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Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:14794..15255+

>Gcaud2508.t1 ID=Gcaud2508.t1|Name=Gcaud2508.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=462bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:14794..15255+ (Gracilaria caudata M_176_S67 male)
ATGAAACATAGAGTGGCGCTGCGAAAGCTCTCGCGAACCGGCTCGCATCG
GAAGGCGCTGTTCCGCAATCAGGTCACGTCTCTCATCGAGCACGAGCGCA
TCGAAACCACCGTGGCAAAGGCGAAGGAGCTACGTCGCATCGCAGATCGC
ATCATAACGCTGGGAAAGAAGCAAACACTCAACGCAAAACGACGTGTCAA
CGGCTACGTGCAGACCGATCACGCCTCCAAAAAGGTGTTCATGGAGCTTG
CGCCGCGCTTTGAGCACAGAAGTGGCGGCTACACTCGGGTGCTCAAGACA
CGCTTTAGAAGAGGCGACTGTGCGCCCATGGCTGTCATCGAATGGACGCA
GACGGACAAATCTATCCTCACTCCGGAACAGATTATGAGGAAGCGACAAA
GGAAGACAAGGTCTTCTTTGTCGCCACCCACTCATCCCGGATTGGCGGTC
GCGTTGCACTGA
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