Gcaud2502.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2502.t1
Unique NameGcaud2502.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_441_length_25217_cov_4.561570contigNODE_441_length_25217_cov_4.561570:220..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706515.1
Preferred nameTPS1
PFAMsGlyco_transf_20,Trehalose_PPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K00697,ko:K01087,ko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0000287,GO:0000302,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0004553,GO:0004805,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005946,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0007049,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009266,GO:0009269,GO:0009311,GO:0009312,GO:0009405,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0015927,GO:0016020,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0019203,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030447,GO:0031668,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0034293,GO:0034599,GO:0034605,GO:0034614,GO:0034637,GO:0035251,GO:0035690,GO:0036168,GO:0036180,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0042578,GO:0042631,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043934,GO:0043935,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046351,GO:0046527,GO:0046677,GO:0046686,GO:0046872,GO:0048468,GO:0048646,GO:0048831,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050896,GO:0051239,GO:0051321,GO:0051704,GO:0051716,GO:0060688,GO:0065007,GO:0070013,GO:0070301,GO:0070413,GO:0070414,GO:0070415,GO:0070417,GO:0070887,GO:0071214,GO:0071229,GO:0071236,GO:0071462,GO:0071465,GO:0071496,GO:0071704,GO:0071944,GO:0090441,GO:0097237,GO:0104004,GO:1900618,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1903046,GO:1905428,GO:1990234,GO:2000026,GO:2000032
Evalue2.2e-73
EggNOG OGsCOG1877@1|root,KOG1050@2759|Eukaryota
EC2.4.1.15,2.4.1.347,3.1.3.12
Descriptiontrehalose biosynthetic process
COG categoryG
CAZyGT20
BiGG ReactioniRC1080.CRv4_Au5_s12_g3028_t1
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2502Gcaud2502Gracilaria caudata M_176_S67 malegeneNODE_441_length_25217_cov_4.561570 220..1011 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2502.t1.start1Gcaud2502.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_441_length_25217_cov_4.561570 220..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2502.t1.CDS1Gcaud2502.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_441_length_25217_cov_4.561570 220..1011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2502.t1.exon1Gcaud2502.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_441_length_25217_cov_4.561570 220..1011 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2502.t1.stop1Gcaud2502.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_441_length_25217_cov_4.561570 1009..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2502.t1Gcaud2502.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_441_length_25217_cov_4.561570 220..1011 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2502.t1 ID=Gcaud2502.t1|Name=Gcaud2502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
LDAVDQLLAELVRQRRRVVFFLDYDGTLSPIVDDPERAFLPEPTRQALCA
LKSRFTTAIVSGRSKDKVKSLVNVGGLIYAGSHGFDIEGAHGVISHRVAG
HFLPALGAARRELLKLVPQFGGASVEDNVLSVSFHYRRCEQARIAQIKTA
VQRVASAHGLRVTHGKKVYELRPTFDWHKGKAVEYLLDVLNLNEAHVLPI
YIGDDTTDEDAFRVLRGKGLSIIVHDAQGARLTLADWRLSDPAEVRALLL
RFADESRLQSEGG*
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spliced messenger RNA

>Gcaud2502.t1 ID=Gcaud2502.t1|Name=Gcaud2502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:220..1011+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACGCTGTCGACCAGCTGCTGGCGGAGCTGGTGCGGCAGCGCCGACG
CGTGGTGTTCTTCCTGGACTACGACGGCACGCTGTCGCCCATTGTGGACG
ACCCGGAGCGCGCGTTTCTGCCAGAGCCCACGCGACAGGCGCTGTGCGCG
CTCAAGTCGCGCTTCACCACCGCCATTGTGTCGGGGCGTTCGAAGGACAA
GGTGAAGTCGCTGGTGAATGTGGGCGGGCTCATCTACGCCGGGTCGCACG
GCTTCGACATTGAGGGCGCGCACGGCGTCATCTCGCACCGCGTGGCGGGC
CACTTCCTACCGGCGTTGGGCGCGGCGCGGCGCGAGCTGTTGAAGCTTGT
GCCGCAGTTTGGCGGCGCTTCTGTGGAGGACAATGTGTTGTCTGTGTCGT
TCCACTACCGGCGCTGCGAGCAGGCGCGGATAGCGCAAATCAAAACGGCG
GTGCAACGGGTGGCCAGCGCGCATGGCTTGCGTGTGACGCATGGCAAGAA
GGTGTACGAGCTGCGCCCGACGTTCGACTGGCACAAGGGAAAGGCGGTGG
AGTATTTGCTGGACGTTTTGAATCTGAATGAGGCACATGTACTTCCTATC
TATATTGGCGACGACACTACCGATGAGGACGCTTTCAGGGTGCTGCGCGG
GAAGGGGCTGTCCATCATTGTGCACGACGCGCAGGGCGCGCGCCTGACGC
TGGCCGACTGGCGACTGAGCGACCCGGCGGAGGTGCGCGCGCTGCTACTG
CGGTTTGCGGACGAGAGCCGGCTGCAGAGCGAGGGCGGTTAG
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protein sequence of Gcaud2502.t1

>Gcaud2502.t1 ID=Gcaud2502.t1|Name=Gcaud2502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
LDAVDQLLAELVRQRRRVVFFLDYDGTLSPIVDDPERAFLPEPTRQALCA
LKSRFTTAIVSGRSKDKVKSLVNVGGLIYAGSHGFDIEGAHGVISHRVAG
HFLPALGAARRELLKLVPQFGGASVEDNVLSVSFHYRRCEQARIAQIKTA
VQRVASAHGLRVTHGKKVYELRPTFDWHKGKAVEYLLDVLNLNEAHVLPI
YIGDDTTDEDAFRVLRGKGLSIIVHDAQGARLTLADWRLSDPAEVRALLL
RFADESRLQSEGG*
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mRNA from alignment at NODE_441_length_25217_cov_4.561570:220..1011+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2502.t1 ID=Gcaud2502.t1|Name=Gcaud2502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:220..1011+ (Gracilaria caudata M_176_S67 male)
CTGGACGCTGTCGACCAGCTGCTGGCGGAGCTGGTGCGGCAGCGCCGACG
CGTGGTGTTCTTCCTGGACTACGACGGCACGCTGTCGCCCATTGTGGACG
ACCCGGAGCGCGCGTTTCTGCCAGAGCCCACGCGACAGGCGCTGTGCGCG
CTCAAGTCGCGCTTCACCACCGCCATTGTGTCGGGGCGTTCGAAGGACAA
GGTGAAGTCGCTGGTGAATGTGGGCGGGCTCATCTACGCCGGGTCGCACG
GCTTCGACATTGAGGGCGCGCACGGCGTCATCTCGCACCGCGTGGCGGGC
CACTTCCTACCGGCGTTGGGCGCGGCGCGGCGCGAGCTGTTGAAGCTTGT
GCCGCAGTTTGGCGGCGCTTCTGTGGAGGACAATGTGTTGTCTGTGTCGT
TCCACTACCGGCGCTGCGAGCAGGCGCGGATAGCGCAAATCAAAACGGCG
GTGCAACGGGTGGCCAGCGCGCATGGCTTGCGTGTGACGCATGGCAAGAA
GGTGTACGAGCTGCGCCCGACGTTCGACTGGCACAAGGGAAAGGCGGTGG
AGTATTTGCTGGACGTTTTGAATCTGAATGAGGCACATGTACTTCCTATC
TATATTGGCGACGACACTACCGATGAGGACGCTTTCAGGGTGCTGCGCGG
GAAGGGGCTGTCCATCATTGTGCACGACGCGCAGGGCGCGCGCCTGACGC
TGGCCGACTGGCGACTGAGCGACCCGGCGGAGGTGCGCGCGCTGCTACTG
CGGTTTGCGGACGAGAGCCGGCTGCAGAGCGAGGGCGGTTAG
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Coding sequence (CDS) from alignment at NODE_441_length_25217_cov_4.561570:220..1011+

>Gcaud2502.t1 ID=Gcaud2502.t1|Name=Gcaud2502.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_441_length_25217_cov_4.561570:220..1011+ (Gracilaria caudata M_176_S67 male)
CTGGACGCTGTCGACCAGCTGCTGGCGGAGCTGGTGCGGCAGCGCCGACG
CGTGGTGTTCTTCCTGGACTACGACGGCACGCTGTCGCCCATTGTGGACG
ACCCGGAGCGCGCGTTTCTGCCAGAGCCCACGCGACAGGCGCTGTGCGCG
CTCAAGTCGCGCTTCACCACCGCCATTGTGTCGGGGCGTTCGAAGGACAA
GGTGAAGTCGCTGGTGAATGTGGGCGGGCTCATCTACGCCGGGTCGCACG
GCTTCGACATTGAGGGCGCGCACGGCGTCATCTCGCACCGCGTGGCGGGC
CACTTCCTACCGGCGTTGGGCGCGGCGCGGCGCGAGCTGTTGAAGCTTGT
GCCGCAGTTTGGCGGCGCTTCTGTGGAGGACAATGTGTTGTCTGTGTCGT
TCCACTACCGGCGCTGCGAGCAGGCGCGGATAGCGCAAATCAAAACGGCG
GTGCAACGGGTGGCCAGCGCGCATGGCTTGCGTGTGACGCATGGCAAGAA
GGTGTACGAGCTGCGCCCGACGTTCGACTGGCACAAGGGAAAGGCGGTGG
AGTATTTGCTGGACGTTTTGAATCTGAATGAGGCACATGTACTTCCTATC
TATATTGGCGACGACACTACCGATGAGGACGCTTTCAGGGTGCTGCGCGG
GAAGGGGCTGTCCATCATTGTGCACGACGCGCAGGGCGCGCGCCTGACGC
TGGCCGACTGGCGACTGAGCGACCCGGCGGAGGTGCGCGCGCTGCTACTG
CGGTTTGCGGACGAGAGCCGGCTGCAGAGCGAGGGCGGTTAG
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