Gcaud2109.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2109.t1
Unique Name	Gcaud2109.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:41365..42960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009357703.1
PFAMs	Anticodon_1,tRNA-synt_1g
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01874
KEGG Reaction	R03659,R04773
KEGG Pathway	ko00450,ko00970,map00450,map00970
KEGG Module	M00359,M00360
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0035670,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0090567,GO:0099402,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue	9.56e-217
EggNOG OGs	COG0143@1\|root,KOG0436@2759\|Eukaryota,37PE4@33090\|Viridiplantae,3GFZ4@35493\|Streptophyta,4JNE9@91835\|fabids
EC	6.1.1.10
Description	Belongs to the class-I aminoacyl-tRNA synthetase family
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2109	Gcaud2109	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 41365..42960 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2109.t1.start1	Gcaud2109.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 41365..41367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2109.t1.CDS1	Gcaud2109.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 41365..42960 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2109.t1.exon1	Gcaud2109.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 41365..42960 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2109.t1.stop1	Gcaud2109.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 42958..42960 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2109.t1	Gcaud2109.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 41365..42960 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+

mRNA sequence

>Gcaud2109.t1 ID=Gcaud2109.t1|Name=Gcaud2109.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MVLTTPLFYVNAPPHMGSAYPTLAADALARFYRMAGAHVTFVTGTDEHGE
KIAAAAAKGRAESGGTLSFCDAVSERFKELWRCMDVRYDRFVRTTAQQHE
LVVRQFMQRVWANGDIYKSEYEGLYCTGCEEYKDVKDLLPRNICPTHQTA
CLSRKEDNYFFALSKYQDSLEAFLDDNPAFVQPPERRNEVLAWVKSGIRD
FSVSRANNPWGIPVPHDQNQTIYVWFDALVGYLSALLQDTDQPTLEQLST
RGWPADVHIIGKDILRFHAVYWPAMLMSAGLPLPRRVIAHGFITKDGMKM
GKSLGNTLDPFQLVDAYGSDAVRYYFLKALDFGKDGDFSEQRFIDIVNAD
LANSLGNLLNRSLNLLKKNCGSTLPLSSALLGLSDDDEQEKLLRHTAERA
YKQAYAYYEALDFNAACDAIMGISFEANAYIDRVAPWTKFKSDDVRDIQL
AQRCIVNVLEASRIVAVGLNPIVPQVSKKVYDAFGLGDEYERGLTWEAMR
WGRLTEGMTFAKPKPVFPRLELVVPQAAVVS*

spliced messenger RNA

>Gcaud2109.t1 ID=Gcaud2109.t1|Name=Gcaud2109.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCACGACGCCGCTGTTCTACGTGAACGCGCCGCCGCATATGGG
CTCGGCATACCCCACGCTGGCCGCCGATGCGCTGGCCAGGTTTTATCGCA
TGGCGGGCGCGCACGTCACGTTTGTGACGGGCACAGACGAGCACGGCGAG
AAGATTGCGGCCGCGGCGGCGAAGGGACGCGCGGAGAGTGGGGGGACGTT
GTCGTTTTGTGATGCGGTGTCGGAGCGATTCAAGGAGCTTTGGAGATGCA
TGGATGTGCGCTATGACCGCTTTGTGCGCACCACCGCGCAGCAACATGAG
CTTGTTGTGCGTCAGTTTATGCAAAGGGTGTGGGCGAACGGAGATATTTA
CAAGAGTGAGTATGAGGGATTATATTGTACTGGATGCGAGGAATATAAGG
ATGTCAAGGATTTGTTGCCCAGAAATATCTGCCCTACTCATCAGACCGCC
TGTTTGAGTCGCAAGGAGGATAATTACTTCTTCGCGCTCTCCAAGTATCA
GGATAGTTTGGAGGCTTTTTTGGACGATAATCCCGCTTTTGTGCAGCCGC
CAGAGCGAAGAAATGAGGTCTTGGCTTGGGTTAAGAGCGGCATTCGTGAC
TTTAGTGTGTCCAGAGCTAACAATCCGTGGGGAATTCCGGTTCCCCATGA
CCAAAACCAGACTATCTACGTGTGGTTTGACGCGCTTGTGGGCTATCTCA
GCGCGTTGCTACAGGATACCGATCAACCCACTTTGGAGCAGCTCTCTACT
CGCGGCTGGCCGGCCGATGTGCACATTATCGGTAAGGACATCTTGCGTTT
TCATGCCGTGTATTGGCCAGCCATGCTCATGTCGGCCGGACTGCCATTGC
CGCGAAGAGTGATTGCGCACGGCTTCATTACAAAGGACGGCATGAAAATG
GGCAAGAGTCTGGGTAATACTCTCGATCCGTTCCAACTGGTGGACGCTTA
TGGCAGTGATGCGGTGCGCTACTATTTTTTGAAGGCGCTCGACTTTGGGA
AGGATGGCGACTTTTCGGAGCAACGCTTTATCGATATTGTGAACGCCGAT
CTGGCAAATTCGTTGGGCAATTTGTTGAATCGCTCGCTGAATTTGCTTAA
GAAGAATTGTGGCAGCACTTTACCGTTGTCGTCGGCGCTGTTGGGGTTGT
CGGATGACGATGAGCAGGAGAAGCTTTTGAGACACACGGCTGAGCGCGCT
TACAAGCAGGCGTACGCTTATTATGAGGCACTGGATTTCAATGCCGCTTG
CGACGCGATCATGGGTATATCGTTTGAGGCCAATGCGTACATTGATCGTG
TGGCACCGTGGACCAAATTCAAATCTGACGATGTACGCGATATTCAGCTG
GCGCAGAGATGCATTGTGAACGTGTTGGAAGCGTCGAGGATTGTGGCGGT
GGGCCTGAATCCGATTGTGCCACAAGTTTCGAAAAAGGTTTATGACGCGT
TTGGGCTTGGGGACGAATACGAGCGAGGGTTGACGTGGGAGGCGATGAGA
TGGGGACGCTTGACCGAGGGAATGACGTTTGCAAAGCCCAAGCCGGTGTT
TCCCAGATTGGAGCTTGTTGTACCGCAAGCTGCCGTTGTTTCATAG

protein sequence of Gcaud2109.t1

>Gcaud2109.t1 ID=Gcaud2109.t1|Name=Gcaud2109.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MVLTTPLFYVNAPPHMGSAYPTLAADALARFYRMAGAHVTFVTGTDEHGE
KIAAAAAKGRAESGGTLSFCDAVSERFKELWRCMDVRYDRFVRTTAQQHE
LVVRQFMQRVWANGDIYKSEYEGLYCTGCEEYKDVKDLLPRNICPTHQTA
CLSRKEDNYFFALSKYQDSLEAFLDDNPAFVQPPERRNEVLAWVKSGIRD
FSVSRANNPWGIPVPHDQNQTIYVWFDALVGYLSALLQDTDQPTLEQLST
RGWPADVHIIGKDILRFHAVYWPAMLMSAGLPLPRRVIAHGFITKDGMKM
GKSLGNTLDPFQLVDAYGSDAVRYYFLKALDFGKDGDFSEQRFIDIVNAD
LANSLGNLLNRSLNLLKKNCGSTLPLSSALLGLSDDDEQEKLLRHTAERA
YKQAYAYYEALDFNAACDAIMGISFEANAYIDRVAPWTKFKSDDVRDIQL
AQRCIVNVLEASRIVAVGLNPIVPQVSKKVYDAFGLGDEYERGLTWEAMR
WGRLTEGMTFAKPKPVFPRLELVVPQAAVVS*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2109.t1 ID=Gcaud2109.t1|Name=Gcaud2109.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+ (Gracilaria caudata M_176_S67 male)
ATGGTGCTCACGACGCCGCTGTTCTACGTGAACGCGCCGCCGCATATGGG
CTCGGCATACCCCACGCTGGCCGCCGATGCGCTGGCCAGGTTTTATCGCA
TGGCGGGCGCGCACGTCACGTTTGTGACGGGCACAGACGAGCACGGCGAG
AAGATTGCGGCCGCGGCGGCGAAGGGACGCGCGGAGAGTGGGGGGACGTT
GTCGTTTTGTGATGCGGTGTCGGAGCGATTCAAGGAGCTTTGGAGATGCA
TGGATGTGCGCTATGACCGCTTTGTGCGCACCACCGCGCAGCAACATGAG
CTTGTTGTGCGTCAGTTTATGCAAAGGGTGTGGGCGAACGGAGATATTTA
CAAGAGTGAGTATGAGGGATTATATTGTACTGGATGCGAGGAATATAAGG
ATGTCAAGGATTTGTTGCCCAGAAATATCTGCCCTACTCATCAGACCGCC
TGTTTGAGTCGCAAGGAGGATAATTACTTCTTCGCGCTCTCCAAGTATCA
GGATAGTTTGGAGGCTTTTTTGGACGATAATCCCGCTTTTGTGCAGCCGC
CAGAGCGAAGAAATGAGGTCTTGGCTTGGGTTAAGAGCGGCATTCGTGAC
TTTAGTGTGTCCAGAGCTAACAATCCGTGGGGAATTCCGGTTCCCCATGA
CCAAAACCAGACTATCTACGTGTGGTTTGACGCGCTTGTGGGCTATCTCA
GCGCGTTGCTACAGGATACCGATCAACCCACTTTGGAGCAGCTCTCTACT
CGCGGCTGGCCGGCCGATGTGCACATTATCGGTAAGGACATCTTGCGTTT
TCATGCCGTGTATTGGCCAGCCATGCTCATGTCGGCCGGACTGCCATTGC
CGCGAAGAGTGATTGCGCACGGCTTCATTACAAAGGACGGCATGAAAATG
GGCAAGAGTCTGGGTAATACTCTCGATCCGTTCCAACTGGTGGACGCTTA
TGGCAGTGATGCGGTGCGCTACTATTTTTTGAAGGCGCTCGACTTTGGGA
AGGATGGCGACTTTTCGGAGCAACGCTTTATCGATATTGTGAACGCCGAT
CTGGCAAATTCGTTGGGCAATTTGTTGAATCGCTCGCTGAATTTGCTTAA
GAAGAATTGTGGCAGCACTTTACCGTTGTCGTCGGCGCTGTTGGGGTTGT
CGGATGACGATGAGCAGGAGAAGCTTTTGAGACACACGGCTGAGCGCGCT
TACAAGCAGGCGTACGCTTATTATGAGGCACTGGATTTCAATGCCGCTTG
CGACGCGATCATGGGTATATCGTTTGAGGCCAATGCGTACATTGATCGTG
TGGCACCGTGGACCAAATTCAAATCTGACGATGTACGCGATATTCAGCTG
GCGCAGAGATGCATTGTGAACGTGTTGGAAGCGTCGAGGATTGTGGCGGT
GGGCCTGAATCCGATTGTGCCACAAGTTTCGAAAAAGGTTTATGACGCGT
TTGGGCTTGGGGACGAATACGAGCGAGGGTTGACGTGGGAGGCGATGAGA
TGGGGACGCTTGACCGAGGGAATGACGTTTGCAAAGCCCAAGCCGGTGTT
TCCCAGATTGGAGCTTGTTGTACCGCAAGCTGCCGTTGTTTCATAG

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+

>Gcaud2109.t1 ID=Gcaud2109.t1|Name=Gcaud2109.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:41365..42960+ (Gracilaria caudata M_176_S67 male)
ATGGTGCTCACGACGCCGCTGTTCTACGTGAACGCGCCGCCGCATATGGG
CTCGGCATACCCCACGCTGGCCGCCGATGCGCTGGCCAGGTTTTATCGCA
TGGCGGGCGCGCACGTCACGTTTGTGACGGGCACAGACGAGCACGGCGAG
AAGATTGCGGCCGCGGCGGCGAAGGGACGCGCGGAGAGTGGGGGGACGTT
GTCGTTTTGTGATGCGGTGTCGGAGCGATTCAAGGAGCTTTGGAGATGCA
TGGATGTGCGCTATGACCGCTTTGTGCGCACCACCGCGCAGCAACATGAG
CTTGTTGTGCGTCAGTTTATGCAAAGGGTGTGGGCGAACGGAGATATTTA
CAAGAGTGAGTATGAGGGATTATATTGTACTGGATGCGAGGAATATAAGG
ATGTCAAGGATTTGTTGCCCAGAAATATCTGCCCTACTCATCAGACCGCC
TGTTTGAGTCGCAAGGAGGATAATTACTTCTTCGCGCTCTCCAAGTATCA
GGATAGTTTGGAGGCTTTTTTGGACGATAATCCCGCTTTTGTGCAGCCGC
CAGAGCGAAGAAATGAGGTCTTGGCTTGGGTTAAGAGCGGCATTCGTGAC
TTTAGTGTGTCCAGAGCTAACAATCCGTGGGGAATTCCGGTTCCCCATGA
CCAAAACCAGACTATCTACGTGTGGTTTGACGCGCTTGTGGGCTATCTCA
GCGCGTTGCTACAGGATACCGATCAACCCACTTTGGAGCAGCTCTCTACT
CGCGGCTGGCCGGCCGATGTGCACATTATCGGTAAGGACATCTTGCGTTT
TCATGCCGTGTATTGGCCAGCCATGCTCATGTCGGCCGGACTGCCATTGC
CGCGAAGAGTGATTGCGCACGGCTTCATTACAAAGGACGGCATGAAAATG
GGCAAGAGTCTGGGTAATACTCTCGATCCGTTCCAACTGGTGGACGCTTA
TGGCAGTGATGCGGTGCGCTACTATTTTTTGAAGGCGCTCGACTTTGGGA
AGGATGGCGACTTTTCGGAGCAACGCTTTATCGATATTGTGAACGCCGAT
CTGGCAAATTCGTTGGGCAATTTGTTGAATCGCTCGCTGAATTTGCTTAA
GAAGAATTGTGGCAGCACTTTACCGTTGTCGTCGGCGCTGTTGGGGTTGT
CGGATGACGATGAGCAGGAGAAGCTTTTGAGACACACGGCTGAGCGCGCT
TACAAGCAGGCGTACGCTTATTATGAGGCACTGGATTTCAATGCCGCTTG
CGACGCGATCATGGGTATATCGTTTGAGGCCAATGCGTACATTGATCGTG
TGGCACCGTGGACCAAATTCAAATCTGACGATGTACGCGATATTCAGCTG
GCGCAGAGATGCATTGTGAACGTGTTGGAAGCGTCGAGGATTGTGGCGGT
GGGCCTGAATCCGATTGTGCCACAAGTTTCGAAAAAGGTTTATGACGCGT
TTGGGCTTGGGGACGAATACGAGCGAGGGTTGACGTGGGAGGCGATGAGA
TGGGGACGCTTGACCGAGGGAATGACGTTTGCAAAGCCCAAGCCGGTGTT
TCCCAGATTGGAGCTTGTTGTACCGCAAGCTGCCGTTGTTTCATAG