Gcaud2097.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2097.t1
Unique Name	Gcaud2097.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:5011..6798 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706962.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08959
KEGG Pathway	ko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Evalue	5.55e-222
EggNOG OGs	KOG1164@1\|root,KOG1164@2759\|Eukaryota
EC	2.7.11.1
Description	protein kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2097	Gcaud2097	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 5011..6798 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2097.t1.start1	Gcaud2097.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 5011..5013 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2097.t1.CDS1	Gcaud2097.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 5011..6798 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2097.t1.exon1	Gcaud2097.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 5011..6798 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2097.t1.stop1	Gcaud2097.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 6796..6798 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2097.t1	Gcaud2097.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 5011..6798 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+

mRNA sequence

>Gcaud2097.t1 ID=Gcaud2097.t1|Name=Gcaud2097.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MDDDPRKDPVPLQVGEGSRRYFVFKHAHLGSGHFGDVFMGEHVSSTQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWDTVSVIGYKCVQLLRKLHSKGYVHGDVKPENFLCAY
SEDNVIDPSRGLFMVDLGLASRWRDLSKPGGHIAYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFNGSLPWQGYSGEDKNMQVCETKGR
MTVESMCRGAPEVLQYFLAYVRQMKFEESPDYDYLMLLCDSSRGLKEVKK
LLIAQEKEQLGDTYQPMVGSKRKQRDLDDVGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVKEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYLEQALHYCHDPDFPREWVRQKWEQSYFITSVAGNESC
WGVVCSTMQRGRKYKQQSYIVSATFPSKWIADKWNADFHITSIATQGRFQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTQEQCA
FVMSRGASYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*

spliced messenger RNA

>Gcaud2097.t1 ID=Gcaud2097.t1|Name=Gcaud2097.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGACCCGCGAAAGGACCCTGTCCCCCTCCAGGTGGGCGAGGG
CTCTCGACGCTACTTCGTCTTCAAGCATGCTCACCTTGGATCCGGCCACT
TTGGCGATGTGTTCATGGGTGAGCATGTCTCCAGCACCCAAAAGGTCGCC
ATCAAACTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTACATGAATGGAGACGGCGCCCCTAGAGTCCACTACACCGGTC
ACCATGGTCGCTATTATGTCATGGTCATGGATCTTCTGGGTCCCACGCTG
CAGAGACTGCTGGAGAGCCGGCCCCCACGCGGTCTTTCATGGGATACTGT
CTCCGTCATTGGCTACAAATGCGTGCAGCTCTTGCGCAAGTTGCATTCGA
AAGGCTATGTACATGGCGACGTCAAGCCGGAGAACTTTCTTTGCGCCTAC
TCGGAGGACAATGTTATCGATCCTAGTCGCGGCCTCTTCATGGTTGACTT
GGGTCTCGCTTCGCGCTGGCGAGACTTATCCAAACCGGGAGGCCACATTG
CCTATGGCCAGCGAGTGGATCATTTTTCCGGCACCGTGCGCTACGCCTCC
GTCAATGCCCATCTAGGTCGCTGGCTGTCGCGACGAGACGATCTGGAAAG
TTTGGGTTATATGCTTTTGTACTTGTTCAATGGCTCTCTGCCGTGGCAGG
GTTACTCTGGAGAGGACAAGAACATGCAGGTTTGTGAGACAAAGGGTCGC
ATGACTGTGGAGTCTATGTGTCGCGGTGCACCGGAGGTGCTCCAATACTT
CTTGGCCTATGTGCGTCAGATGAAGTTCGAGGAGTCTCCGGATTACGACT
ATCTAATGCTGTTGTGTGACAGCAGTCGTGGACTCAAGGAGGTGAAGAAG
CTTTTGATTGCTCAGGAGAAGGAGCAACTCGGTGATACTTATCAGCCAAT
GGTGGGGTCGAAGAGAAAGCAACGCGATCTCGATGACGTGGGAGCACCTT
TAGTGAAGAAGCATAAAGTTGTGCTTCCAAAGCGAATCAAGACTCACCAG
TGGATCATCGTTTCCACAAGCGCGCGAACCAATCTCTCGCCACAGACTCA
GTGCTACACTTCACACACATCTTACTCCAATTTGGTGAAGGAAGTAGAGC
GAAAATGGGGGTTACTCATGCGAATAACAAGTCTCAACTTTGCTGGTGGG
ATGTGGACGGCAGTGCTAAACTCGCGCAACTCTGGTTACTTGGAGCAAGC
GTTGCACTACTGCCACGACCCAGACTTTCCGCGTGAGTGGGTTCGTCAAA
AATGGGAACAGTCCTACTTCATTACTTCCGTCGCTGGGAATGAAAGCTGT
TGGGGAGTTGTGTGCTCGACGATGCAACGGGGTCGCAAATACAAGCAGCA
ATCATACATAGTTTCGGCCACGTTCCCGTCTAAATGGATCGCAGACAAAT
GGAACGCCGATTTTCATATTACTTCCATTGCAACACAGGGTCGCTTTCAA
ATGCAATGGTGTGTCGTCATGTCGAGAGGCGCACCATACAAGGATCAGTG
TGTCGAGCTCGACTTTCAATACCCCTCTCATTCTATCCACGCACGATGGG
ACGAGAACTATATGATTACCGCTGTTGCATGCACTCAGGAGCAATGTGCG
TTTGTCATGTCGAGAGGAGCAAGCTATGGAGAGGAACAGCGATGCACGCG
CACATCACATGGGCCACTACATAAGATACGGGAAGACTGGAACGATTCTT
TATACGTAACTTGTCTTTCGTACGGTCGAGTAAGCTAG

protein sequence of Gcaud2097.t1

>Gcaud2097.t1 ID=Gcaud2097.t1|Name=Gcaud2097.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MDDDPRKDPVPLQVGEGSRRYFVFKHAHLGSGHFGDVFMGEHVSSTQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSWDTVSVIGYKCVQLLRKLHSKGYVHGDVKPENFLCAY
SEDNVIDPSRGLFMVDLGLASRWRDLSKPGGHIAYGQRVDHFSGTVRYAS
VNAHLGRWLSRRDDLESLGYMLLYLFNGSLPWQGYSGEDKNMQVCETKGR
MTVESMCRGAPEVLQYFLAYVRQMKFEESPDYDYLMLLCDSSRGLKEVKK
LLIAQEKEQLGDTYQPMVGSKRKQRDLDDVGAPLVKKHKVVLPKRIKTHQ
WIIVSTSARTNLSPQTQCYTSHTSYSNLVKEVERKWGLLMRITSLNFAGG
MWTAVLNSRNSGYLEQALHYCHDPDFPREWVRQKWEQSYFITSVAGNESC
WGVVCSTMQRGRKYKQQSYIVSATFPSKWIADKWNADFHITSIATQGRFQ
MQWCVVMSRGAPYKDQCVELDFQYPSHSIHARWDENYMITAVACTQEQCA
FVMSRGASYGEEQRCTRTSHGPLHKIREDWNDSLYVTCLSYGRVS*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2097.t1 ID=Gcaud2097.t1|Name=Gcaud2097.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+ (Gracilaria caudata M_176_S67 male)
ATGGACGACGACCCGCGAAAGGACCCTGTCCCCCTCCAGGTGGGCGAGGG
CTCTCGACGCTACTTCGTCTTCAAGCATGCTCACCTTGGATCCGGCCACT
TTGGCGATGTGTTCATGGGTGAGCATGTCTCCAGCACCCAAAAGGTCGCC
ATCAAACTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTACATGAATGGAGACGGCGCCCCTAGAGTCCACTACACCGGTC
ACCATGGTCGCTATTATGTCATGGTCATGGATCTTCTGGGTCCCACGCTG
CAGAGACTGCTGGAGAGCCGGCCCCCACGCGGTCTTTCATGGGATACTGT
CTCCGTCATTGGCTACAAATGCGTGCAGCTCTTGCGCAAGTTGCATTCGA
AAGGCTATGTACATGGCGACGTCAAGCCGGAGAACTTTCTTTGCGCCTAC
TCGGAGGACAATGTTATCGATCCTAGTCGCGGCCTCTTCATGGTTGACTT
GGGTCTCGCTTCGCGCTGGCGAGACTTATCCAAACCGGGAGGCCACATTG
CCTATGGCCAGCGAGTGGATCATTTTTCCGGCACCGTGCGCTACGCCTCC
GTCAATGCCCATCTAGGTCGCTGGCTGTCGCGACGAGACGATCTGGAAAG
TTTGGGTTATATGCTTTTGTACTTGTTCAATGGCTCTCTGCCGTGGCAGG
GTTACTCTGGAGAGGACAAGAACATGCAGGTTTGTGAGACAAAGGGTCGC
ATGACTGTGGAGTCTATGTGTCGCGGTGCACCGGAGGTGCTCCAATACTT
CTTGGCCTATGTGCGTCAGATGAAGTTCGAGGAGTCTCCGGATTACGACT
ATCTAATGCTGTTGTGTGACAGCAGTCGTGGACTCAAGGAGGTGAAGAAG
CTTTTGATTGCTCAGGAGAAGGAGCAACTCGGTGATACTTATCAGCCAAT
GGTGGGGTCGAAGAGAAAGCAACGCGATCTCGATGACGTGGGAGCACCTT
TAGTGAAGAAGCATAAAGTTGTGCTTCCAAAGCGAATCAAGACTCACCAG
TGGATCATCGTTTCCACAAGCGCGCGAACCAATCTCTCGCCACAGACTCA
GTGCTACACTTCACACACATCTTACTCCAATTTGGTGAAGGAAGTAGAGC
GAAAATGGGGGTTACTCATGCGAATAACAAGTCTCAACTTTGCTGGTGGG
ATGTGGACGGCAGTGCTAAACTCGCGCAACTCTGGTTACTTGGAGCAAGC
GTTGCACTACTGCCACGACCCAGACTTTCCGCGTGAGTGGGTTCGTCAAA
AATGGGAACAGTCCTACTTCATTACTTCCGTCGCTGGGAATGAAAGCTGT
TGGGGAGTTGTGTGCTCGACGATGCAACGGGGTCGCAAATACAAGCAGCA
ATCATACATAGTTTCGGCCACGTTCCCGTCTAAATGGATCGCAGACAAAT
GGAACGCCGATTTTCATATTACTTCCATTGCAACACAGGGTCGCTTTCAA
ATGCAATGGTGTGTCGTCATGTCGAGAGGCGCACCATACAAGGATCAGTG
TGTCGAGCTCGACTTTCAATACCCCTCTCATTCTATCCACGCACGATGGG
ACGAGAACTATATGATTACCGCTGTTGCATGCACTCAGGAGCAATGTGCG
TTTGTCATGTCGAGAGGAGCAAGCTATGGAGAGGAACAGCGATGCACGCG
CACATCACATGGGCCACTACATAAGATACGGGAAGACTGGAACGATTCTT
TATACGTAACTTGTCTTTCGTACGGTCGAGTAAGCTAG

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+

>Gcaud2097.t1 ID=Gcaud2097.t1|Name=Gcaud2097.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:5011..6798+ (Gracilaria caudata M_176_S67 male)
ATGGACGACGACCCGCGAAAGGACCCTGTCCCCCTCCAGGTGGGCGAGGG
CTCTCGACGCTACTTCGTCTTCAAGCATGCTCACCTTGGATCCGGCCACT
TTGGCGATGTGTTCATGGGTGAGCATGTCTCCAGCACCCAAAAGGTCGCC
ATCAAACTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTACATGAATGGAGACGGCGCCCCTAGAGTCCACTACACCGGTC
ACCATGGTCGCTATTATGTCATGGTCATGGATCTTCTGGGTCCCACGCTG
CAGAGACTGCTGGAGAGCCGGCCCCCACGCGGTCTTTCATGGGATACTGT
CTCCGTCATTGGCTACAAATGCGTGCAGCTCTTGCGCAAGTTGCATTCGA
AAGGCTATGTACATGGCGACGTCAAGCCGGAGAACTTTCTTTGCGCCTAC
TCGGAGGACAATGTTATCGATCCTAGTCGCGGCCTCTTCATGGTTGACTT
GGGTCTCGCTTCGCGCTGGCGAGACTTATCCAAACCGGGAGGCCACATTG
CCTATGGCCAGCGAGTGGATCATTTTTCCGGCACCGTGCGCTACGCCTCC
GTCAATGCCCATCTAGGTCGCTGGCTGTCGCGACGAGACGATCTGGAAAG
TTTGGGTTATATGCTTTTGTACTTGTTCAATGGCTCTCTGCCGTGGCAGG
GTTACTCTGGAGAGGACAAGAACATGCAGGTTTGTGAGACAAAGGGTCGC
ATGACTGTGGAGTCTATGTGTCGCGGTGCACCGGAGGTGCTCCAATACTT
CTTGGCCTATGTGCGTCAGATGAAGTTCGAGGAGTCTCCGGATTACGACT
ATCTAATGCTGTTGTGTGACAGCAGTCGTGGACTCAAGGAGGTGAAGAAG
CTTTTGATTGCTCAGGAGAAGGAGCAACTCGGTGATACTTATCAGCCAAT
GGTGGGGTCGAAGAGAAAGCAACGCGATCTCGATGACGTGGGAGCACCTT
TAGTGAAGAAGCATAAAGTTGTGCTTCCAAAGCGAATCAAGACTCACCAG
TGGATCATCGTTTCCACAAGCGCGCGAACCAATCTCTCGCCACAGACTCA
GTGCTACACTTCACACACATCTTACTCCAATTTGGTGAAGGAAGTAGAGC
GAAAATGGGGGTTACTCATGCGAATAACAAGTCTCAACTTTGCTGGTGGG
ATGTGGACGGCAGTGCTAAACTCGCGCAACTCTGGTTACTTGGAGCAAGC
GTTGCACTACTGCCACGACCCAGACTTTCCGCGTGAGTGGGTTCGTCAAA
AATGGGAACAGTCCTACTTCATTACTTCCGTCGCTGGGAATGAAAGCTGT
TGGGGAGTTGTGTGCTCGACGATGCAACGGGGTCGCAAATACAAGCAGCA
ATCATACATAGTTTCGGCCACGTTCCCGTCTAAATGGATCGCAGACAAAT
GGAACGCCGATTTTCATATTACTTCCATTGCAACACAGGGTCGCTTTCAA
ATGCAATGGTGTGTCGTCATGTCGAGAGGCGCACCATACAAGGATCAGTG
TGTCGAGCTCGACTTTCAATACCCCTCTCATTCTATCCACGCACGATGGG
ACGAGAACTATATGATTACCGCTGTTGCATGCACTCAGGAGCAATGTGCG
TTTGTCATGTCGAGAGGAGCAAGCTATGGAGAGGAACAGCGATGCACGCG
CACATCACATGGGCCACTACATAAGATACGGGAAGACTGGAACGATTCTT
TATACGTAACTTGTCTTTCGTACGGTCGAGTAAGCTAG