Gcaud2106.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2106.t1
Unique NameGcaud2106.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length113
Homology
BLAST of Gcaud2106.t1 vs. uniprot
Match: A0A2V3J408_9FLOR (Dynein light chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J408_9FLOR)

HSP 1 Score: 185 bits (470), Expect = 8.160e-59
Identity = 96/117 (82.05%), Postives = 102/117 (87.18%), Query Frame = 0
Query:    1 MTTATETPTAVRSQASDQ-----KFVPVEKQPRVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            MT A E    VRSQ+ ++     KFVPV+ QPRVV+KSADMPEDM RKAIELALTALDRFELERDMAKFLKKEFD R+QPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG
Sbjct:    1 MTLAPEAAGTVRSQSKEEHFAEHKFVPVKNQPRVVIKSADMPEDMIRKAIELALTALDRFELERDMAKFLKKEFDTRYQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 117          
BLAST of Gcaud2106.t1 vs. uniprot
Match: R7QH34_CHOCR (Dynein light chain n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH34_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 6.490e-52
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 0
Query:   16 SDQKFVPVEKQPRVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            S  + +P  +QPRVVVKSADMP+DMQRKAIELAL ALDRFELERDMA++LKKEFD RFQPSWHCIVGRHFGSYVTHE +GFLYFYIEK A+LLFRSG
Sbjct:   24 SSARHIPASRQPRVVVKSADMPDDMQRKAIELALVALDRFELERDMAQYLKKEFDARFQPSWHCIVGRHFGSYVTHEGAGFLYFYIEKIAILLFRSG 120          
BLAST of Gcaud2106.t1 vs. uniprot
Match: Q4FKD8_TRYB2 (Dynein light chain n=12 Tax=Trypanosomatidae TaxID=5654 RepID=Q4FKD8_TRYB2)

HSP 1 Score: 124 bits (312), Expect = 4.250e-35
Identity = 52/85 (61.18%), Postives = 73/85 (85.88%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + ++K+ADMPEDMQ  A+E+AL AL++F +E+D+A ++KKEFD ++QP+WHCIVGR+FGSYVTHE+  FLYFY  + A+LLF+SG
Sbjct:    6 KAIIKNADMPEDMQSDAVEVALQALEKFNIEKDIAAYIKKEFDKKYQPTWHCIVGRNFGSYVTHETHSFLYFYFGQVAILLFKSG 90          
BLAST of Gcaud2106.t1 vs. uniprot
Match: A0A8C4N859_EPTBU (Dynein light chain n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N859_EPTBU)

HSP 1 Score: 120 bits (301), Expect = 1.950e-33
Identity = 50/83 (60.24%), Postives = 69/83 (83.13%), Query Frame = 0
Query:   30 VVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            V+K+ADMP+DMQ  A+  A  ALD+F +E+D+A F+KKEFD ++ P+WHC+VGR+FGSYVTHES  F+YFY+ + A+LLF+SG
Sbjct:    7 VIKNADMPDDMQEDAVSFAKQALDKFNIEKDIASFIKKEFDKKYNPTWHCVVGRNFGSYVTHESKHFIYFYLGQVAILLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: DYL1_HELCR (Dynein light chain LC6, flagellar outer arm n=6 Tax=Eleutherozoa TaxID=133551 RepID=DYL1_HELCR)

HSP 1 Score: 120 bits (300), Expect = 2.770e-33
Identity = 50/85 (58.82%), Postives = 72/85 (84.71%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + V+K+ADMPEDMQ+ A++ A  AL++F +E+D+A ++KKEFD ++ P+WHCIVGR+FGSYVTHE+  F+YFY+ + AVLLF+SG
Sbjct:    5 KAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: T2M856_HYDVU (Dynein light chain n=5 Tax=Eukaryota TaxID=2759 RepID=T2M856_HYDVU)

HSP 1 Score: 120 bits (300), Expect = 2.770e-33
Identity = 52/85 (61.18%), Postives = 71/85 (83.53%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + VVK+ADM EDMQ+ AIE A  A+++F +E+D+A F+KKEFD ++ P+WHCIVGR+FGSYVTHE+  F+YFYI + A+LLF+SG
Sbjct:    5 KAVVKNADMSEDMQQDAIECATNAMEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYIGQVAILLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: A0A504YX66_FASGI (Dynein light chain n=4 Tax=Echinostomatoidea TaxID=404429 RepID=A0A504YX66_FASGI)

HSP 1 Score: 119 bits (299), Expect = 3.940e-33
Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + V+K+ADMPED+Q++ IE  + AL++F +E+D+A F+KK FDN+F P+WHCIVGR+FGSYVTHE+  F+Y YI + AVLLF+SG
Sbjct:    5 KAVIKNADMPEDVQKEVIECCVQALEKFNIEKDVAAFVKKHFDNKFSPTWHCIVGRNFGSYVTHETKHFIYLYIGQVAVLLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: A0A835YTS3_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.940e-33
Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + V+KSADM EDMQ+ A++ A  AL++F +E+D+A F+KKEFD +F P+WHCIVGR+FGSYVTHE+  F+YFY+ + A+LLF+SG
Sbjct:    5 KAVIKSADMSEDMQQDAVDCASQALEKFNIEKDIAAFIKKEFDRKFSPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: V4AKP2_LOTGI (Dynein light chain n=2 Tax=Mollusca TaxID=6447 RepID=V4AKP2_LOTGI)

HSP 1 Score: 119 bits (298), Expect = 5.590e-33
Identity = 50/85 (58.82%), Postives = 72/85 (84.71%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + V+K+ADM EDMQ ++IE A TAL++F +E+D+A ++KKEFD ++ P+WHCIVGR+FGSYVTHE+  F+YFY+ + A+LLF+SG
Sbjct:    5 KAVIKNADMAEDMQSESIECATTALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of Gcaud2106.t1 vs. uniprot
Match: A0A8B7ZSR5_ACAPL (Dynein light chain n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZSR5_ACAPL)

HSP 1 Score: 119 bits (298), Expect = 5.750e-33
Identity = 51/85 (60.00%), Postives = 72/85 (84.71%), Query Frame = 0
Query:   28 RVVVKSADMPEDMQRKAIELALTALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFYIEKTAVLLFRSG 112
            + VVK+ADM E+MQ+ A+E A  A+++F +E+D+A F+KKEFD +F P+WHCIVGR+FGSYVTHE+  F+YFY+++ AVLLF+SG
Sbjct:    6 KAVVKNADMSEEMQQDAVECAKQAMEKFNIEKDIAAFVKKEFDKKFNPTWHCIVGRNFGSYVTHETKHFIYFYLDQVAVLLFKSG 90          
The following BLAST results are available for this feature:
BLAST of Gcaud2106.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J408_9FLOR8.160e-5982.05Dynein light chain n=1 Tax=Gracilariopsis chorda T... [more]
R7QH34_CHOCR6.490e-5282.47Dynein light chain n=1 Tax=Chondrus crispus TaxID=... [more]
Q4FKD8_TRYB24.250e-3561.18Dynein light chain n=12 Tax=Trypanosomatidae TaxID... [more]
A0A8C4N859_EPTBU1.950e-3360.24Dynein light chain n=1 Tax=Eptatretus burgeri TaxI... [more]
DYL1_HELCR2.770e-3358.82Dynein light chain LC6, flagellar outer arm n=6 Ta... [more]
T2M856_HYDVU2.770e-3361.18Dynein light chain n=5 Tax=Eukaryota TaxID=2759 Re... [more]
A0A504YX66_FASGI3.940e-3360.00Dynein light chain n=4 Tax=Echinostomatoidea TaxID... [more]
A0A835YTS3_9STRA3.940e-3360.00Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
V4AKP2_LOTGI5.590e-3358.82Dynein light chain n=2 Tax=Mollusca TaxID=6447 Rep... [more]
A0A8B7ZSR5_ACAPL5.750e-3360.00Dynein light chain n=2 Tax=Valvatida TaxID=41166 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 24..111
e-value: 1.1E-48
score: 177.7
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 29..111
e-value: 5.2E-35
score: 119.7
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 23..112
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10Protein Inhibitor Of Neuronal Nitric Oxide Synthase;coord: 19..111
e-value: 2.8E-37
score: 128.6
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 28..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR11886:SF62DYNEIN LIGHT CHAINcoord: 23..112
IPR019763Dynein light chain, type 1/2, conserved sitePROSITEPS01239DYNEIN_LIGHT_1coord: 78..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_112_length_49450_cov_4.312142contigNODE_112_length_49450_cov_4.312142:33614..33952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1Gcaud2106.t1Gracilaria caudata M_176_S67 malemRNANODE_112_length_49450_cov_4.312142 33614..33952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=113bp
MTTATETPTAVRSQASDQKFVPVEKQPRVVVKSADMPEDMQRKAIELALT
ALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFY
IEKTAVLLFRSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
IPR037177DLC_sf
IPR019763Dynein_light_1/2_CS