Gcaud2106.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2106.t1
Unique NameGcaud2106.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_112_length_49450_cov_4.312142contigNODE_112_length_49450_cov_4.312142:33614..33952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5691.EAN79052
PFAMsDynein_light
Max annot lvl5653|Kinetoplastida
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Evalue4.28e-35
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota,3XVQ1@5653|Kinetoplastida
DescriptionDynein light chain
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2106Gcaud2106Gracilaria caudata M_176_S67 malegeneNODE_112_length_49450_cov_4.312142 33614..33952 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1.stop1Gcaud2106.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_112_length_49450_cov_4.312142 33614..33616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1.CDS1Gcaud2106.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_112_length_49450_cov_4.312142 33614..33952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1.exon1Gcaud2106.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_112_length_49450_cov_4.312142 33614..33952 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1.start1Gcaud2106.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_112_length_49450_cov_4.312142 33950..33952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2106.t1Gcaud2106.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_112_length_49450_cov_4.312142 33614..33952 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=113bp
MTTATETPTAVRSQASDQKFVPVEKQPRVVVKSADMPEDMQRKAIELALT
ALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFY
IEKTAVLLFRSG*
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spliced messenger RNA

>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:33614..33952- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACTGCCACGGAGACGCCCACCGCAGTGCGCTCTCAAGCGAGCGA
CCAAAAGTTCGTGCCGGTGGAGAAGCAGCCTCGTGTGGTAGTCAAATCTG
CCGACATGCCCGAGGACATGCAACGAAAGGCAATTGAACTGGCGTTAACA
GCGCTGGATCGCTTCGAACTGGAGCGCGACATGGCAAAGTTTCTCAAGAA
GGAATTTGACAACCGTTTCCAACCGTCGTGGCATTGTATTGTGGGTCGTC
ATTTCGGAAGTTACGTGACGCATGAAAGCTCGGGCTTCCTGTACTTTTAT
ATCGAGAAGACGGCGGTGTTGTTGTTCCGCAGCGGGTAG
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protein sequence of Gcaud2106.t1

>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=113bp
MTTATETPTAVRSQASDQKFVPVEKQPRVVVKSADMPEDMQRKAIELALT
ALDRFELERDMAKFLKKEFDNRFQPSWHCIVGRHFGSYVTHESSGFLYFY
IEKTAVLLFRSG*
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mRNA from alignment at NODE_112_length_49450_cov_4.312142:33614..33952-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:33614..33952- (Gracilaria caudata M_176_S67 male)
ATGACGACTGCCACGGAGACGCCCACCGCAGTGCGCTCTCAAGCGAGCGA
CCAAAAGTTCGTGCCGGTGGAGAAGCAGCCTCGTGTGGTAGTCAAATCTG
CCGACATGCCCGAGGACATGCAACGAAAGGCAATTGAACTGGCGTTAACA
GCGCTGGATCGCTTCGAACTGGAGCGCGACATGGCAAAGTTTCTCAAGAA
GGAATTTGACAACCGTTTCCAACCGTCGTGGCATTGTATTGTGGGTCGTC
ATTTCGGAAGTTACGTGACGCATGAAAGCTCGGGCTTCCTGTACTTTTAT
ATCGAGAAGACGGCGGTGTTGTTGTTCCGCAGCGGGTAG
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Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:33614..33952-

>Gcaud2106.t1 ID=Gcaud2106.t1|Name=Gcaud2106.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=339bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:33614..33952- (Gracilaria caudata M_176_S67 male)
ATGACGACTGCCACGGAGACGCCCACCGCAGTGCGCTCTCAAGCGAGCGA
CCAAAAGTTCGTGCCGGTGGAGAAGCAGCCTCGTGTGGTAGTCAAATCTG
CCGACATGCCCGAGGACATGCAACGAAAGGCAATTGAACTGGCGTTAACA
GCGCTGGATCGCTTCGAACTGGAGCGCGACATGGCAAAGTTTCTCAAGAA
GGAATTTGACAACCGTTTCCAACCGTCGTGGCATTGTATTGTGGGTCGTC
ATTTCGGAAGTTACGTGACGCATGAAAGCTCGGGCTTCCTGTACTTTTAT
ATCGAGAAGACGGCGGTGTTGTTGTTCCGCAGCGGGTAG
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