Gcaud1730.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1730.t1
Unique NameGcaud1730.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1010_length_15078_cov_4.529993contigNODE_1010_length_15078_cov_4.529993:6167..8371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707647.1
Preferred namePTP4A2
PFAMsDSPc,Y_phosphatase
Max annot lvl2759|Eukaryota
KEGG koko:K01104,ko:K18041
GOsGO:0000323,GO:0001667,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0004727,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006355,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008015,GO:0008138,GO:0008150,GO:0008152,GO:0009889,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010631,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0016020,GO:0016311,GO:0016477,GO:0016787,GO:0016788,GO:0016791,GO:0018995,GO:0019219,GO:0019222,GO:0019538,GO:0020016,GO:0020023,GO:0023051,GO:0023052,GO:0023056,GO:0030334,GO:0030335,GO:0030430,GO:0031323,GO:0031326,GO:0031410,GO:0031910,GO:0031982,GO:0032501,GO:0032879,GO:0032880,GO:0033643,GO:0033646,GO:0034097,GO:0035335,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042578,GO:0042995,GO:0043114,GO:0043117,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043412,GO:0043542,GO:0043656,GO:0043657,GO:0043687,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051270,GO:0051272,GO:0051674,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0080090,GO:0090130,GO:0090132,GO:0090287,GO:0097708,GO:0098552,GO:0098562,GO:0120025,GO:0120038,GO:0140096,GO:1900746,GO:1901222,GO:1901224,GO:1901564,GO:1902531,GO:1902533,GO:1902547,GO:1903506,GO:1903561,GO:1904951,GO:1990823,GO:1990830,GO:2000112,GO:2000145,GO:2000147,GO:2001141
Evalue2.94e-30
EggNOG OGsKOG2836@1|root,KOG2836@2759|Eukaryota
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryO
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1730Gcaud1730Gracilaria caudata M_176_S67 malegeneNODE_1010_length_15078_cov_4.529993 6167..8371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1Gcaud1730.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1010_length_15078_cov_4.529993 6167..8371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1.start1Gcaud1730.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1010_length_15078_cov_4.529993 6167..6169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1.CDS1Gcaud1730.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 6167..6779 +
Gcaud1730.t1.CDS2Gcaud1730.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 7352..7459 +
Gcaud1730.t1.CDS3Gcaud1730.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 7533..7559 +
Gcaud1730.t1.CDS4Gcaud1730.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1010_length_15078_cov_4.529993 7620..8371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1.exon1Gcaud1730.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 6167..6779 +
Gcaud1730.t1.exon2Gcaud1730.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 7352..7459 +
Gcaud1730.t1.exon3Gcaud1730.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 7533..7559 +
Gcaud1730.t1.exon4Gcaud1730.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1010_length_15078_cov_4.529993 7620..8371 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1.intron1Gcaud1730.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1010_length_15078_cov_4.529993 6780..7351 +
Gcaud1730.t1.intron2Gcaud1730.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1010_length_15078_cov_4.529993 7460..7532 +
Gcaud1730.t1.intron3Gcaud1730.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1010_length_15078_cov_4.529993 7560..7619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1730.t1.stop1Gcaud1730.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1010_length_15078_cov_4.529993 8369..8371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp
MYGRKNSSYAPYTSRISGPLRALELAFEEVDSRKAEMYRRGMLPDYPTLV
EHGPLRILISSSPSDESLDDYAKLLRSYNVSHVVRVCEHMYSAENLEALG
FHVHEMPFADGEAPSSEVISRWLCLLDKVSALSKHARKNQSSPSSASLVS
EFDEGSSSDSVTEKQTTVAVHCAAGLGRAPVLAAIALVEAGMSPFEAVGS
IRASQCVQDGVMSACGAFDTASLQRIYDCLESRREKYFDEDGNVVDVTEA
KPEHSNDLEFYVLDKRLDWYLYPAEFYRESSYNTQGNGSGNAMGQMKPQG
LQSTAPSATPIPFCGKNEVLANAATAGEHYGTSHSSSGVGAAPCAANDQV
SGPVRTTKSSPRESERTKSPPNAQRKSSTSFSSCEERGKVLHELESSEKA
EPEPLHSRTSSPGDSMKPKSPLNVQGHSSTSSSSTEVREEGLHERESREK
AEPVLEVEKRSQGNEIREQSQAISFKSELTFHTLCSNLEIGSFPASFQF*
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spliced messenger RNA

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCAATGTGTTCAAGATGGAGTTATGTCTGCTTGCGGGGC
ATTCGATACGGCTTCGTTACAGCGTATATATGACTGCCTCGAAAGTCGAA
GGGAGAAGTATTTCGATGAAGACGGAAATGTGGTGGATGTGACGGAAGCC
AAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAACGACT
AGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTACAATA
CCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCACAAGGT
CTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGGAAAAA
CGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCACTTCTC
ATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATCAAGTT
TCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAGAGGAC
TAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTCGTCCT
GCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGAAAGCC
GAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGCATGAA
GCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTCTTCGT
CCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGGAGAAA
GCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAAATACG
GGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCACACGT
TGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGTTTTGA
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protein sequence of Gcaud1730.t1

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MYGRKNSSYAPYTSRISGPLRALELAFEEVDSRKAEMYRRGMLPDYPTLV
EHGPLRILISSSPSDESLDDYAKLLRSYNVSHVVRVCEHMYSAENLEALG
FHVHEMPFADGEAPSSEVISRWLCLLDKVSALSKHARKNQSSPSSASLVS
EFDEGSSSDSVTEKQTTVAVHCAAGLGRAPVLAAIALVEAGMSPFEAVGS
IRASQCVQDGVMSACGAFDTASLQRIYDCLESRREKYFDEDGNVVDVTEA
KPEHSNDLEFYVLDKRLDWYLYPAEFYRESSYNTQGNGSGNAMGQMKPQG
LQSTAPSATPIPFCGKNEVLANAATAGEHYGTSHSSSGVGAAPCAANDQV
SGPVRTTKSSPRESERTKSPPNAQRKSSTSFSSCEERGKVLHELESSEKA
EPEPLHSRTSSPGDSMKPKSPLNVQGHSSTSSSSTEVREEGLHERESREK
AEPVLEVEKRSQGNEIREQSQAISFKSELTFHTLCSNLEIGSFPASFQF*
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mRNA from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2205bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCGTAGAGGCGCAATGAATGGAAGGCAGATGGCTTTCGT
GGAAAGCTACACACGTCGCCCTCCACCTTCCCCGGTCAAGCCTCGGCAAC
GCTCGCGATCCGGTAGTTTTGTTGGCTCTTTTTGGCCCTCATTCAAGGCA
GCACGCCCTTTCCGTCCCAGGAGCCCGGGGCACAATTCTTCCGCAACTCG
CCAGCAGATGAATGCCAACCCGTGCAAACGTTCGGAGATTTAGAACGTGG
CGCCACTGAAAAGGTCATGTTTTGCGGAGCTACACGCATTTTAGATGACT
GGTAACCTATGATACACTTAAGACAACTTCGATAAAGCTTGTCCTTACGA
TTATAGTTTCGTTTCGCCCCTCGAAGCGCATTGCTGGGTAGTTCCTTCGA
ATTGACTATTGCGAATCGAAAGCAAGGCTTCGCTACACCTGCTGCCTTCT
GTTTGAAGTGTGCCCCAATTTTTTGGACAAGGCACATGTGAATCCTGGGC
TACACTTAGACCCTACTCGATCTTCAATCCTTCAGACGTCATCGCGGACA
GGATTTCATGAATCGTGCCTTTGCCAGCTTTGCAGAATGTGTTCAAGATG
GAGTTATGTCTGCTTGCGGGGCATTCGATACGGCTTCGTTACAGCGTATA
TATGACTGCCTCGAAAGTCGAAGGGAGAAGTATTTCGATGAAGGTACAGT
TTGACTTCTTCATTTCTCCTTTTCTTCCTCAGATGACCTGACATTTTCTC
AACGTGACCCTTGAAGACGGAAATGTGGTGGATGTGACGGAAGGTGAGCA
TTGGAAATTAAGTGTTCGCCGCGTACTCTTTACATCTAACCGATTTGGCG
TAGCCAAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAA
CGACTAGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTA
CAATACCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCAC
AAGGTCTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGG
AAAAACGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCAC
TTCTCATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATC
AAGTTTCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAG
AGGACTAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTC
GTCCTGCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGA
AAGCCGAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGC
ATGAAGCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTC
TTCGTCCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGG
AGAAAGCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAA
ATACGGGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCA
CACGTTGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGT
TTTGA
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Coding sequence (CDS) from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1500bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCAATGTGTTCAAGATGGAGTTATGTCTGCTTGCGGGGC
ATTCGATACGGCTTCGTTACAGCGTATATATGACTGCCTCGAAAGTCGAA
GGGAGAAGTATTTCGATGAAGACGGAAATGTGGTGGATGTGACGGAAGCC
AAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAACGACT
AGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTACAATA
CCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCACAAGGT
CTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGGAAAAA
CGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCACTTCTC
ATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATCAAGTT
TCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAGAGGAC
TAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTCGTCCT
GCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGAAAGCC
GAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGCATGAA
GCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTCTTCGT
CCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGGAGAAA
GCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAAATACG
GGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCACACGT
TGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGTTTTGA
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