Gcaud2104.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2104.t1
Unique Name	Gcaud2104.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	135

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:27533..28095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008775679.1
PFAMs	Ten1_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0000723,GO:0000781,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006457,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010521,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019827,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032200,GO:0032501,GO:0032502,GO:0034641,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044092,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048367,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051338,GO:0051348,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098727,GO:0098772,GO:1901360,GO:2000112,GO:2000113,GO:2000278,GO:2000279
Evalue	1.49e-12
EggNOG OGs	2BP4Y@1\|root,2S1R3@2759\|Eukaryota,37VJ9@33090\|Viridiplantae,3GJNK@35493\|Streptophyta,3M0QH@4447\|Liliopsida
Description	Telomere-capping, CST complex subunit
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2104	Gcaud2104	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 27533..28095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1	Gcaud2104.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 27533..28095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1.start1	Gcaud2104.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 27533..27535 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1.CDS1	Gcaud2104.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 27533..27648 +
Gcaud2104.t1.CDS2	Gcaud2104.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 27728..27887 +
Gcaud2104.t1.CDS3	Gcaud2104.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 27967..28095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1.exon1	Gcaud2104.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 27533..27648 +
Gcaud2104.t1.exon2	Gcaud2104.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 27728..27887 +
Gcaud2104.t1.exon3	Gcaud2104.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 27967..28095 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1.intron1	Gcaud2104.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_112_length_49450_cov_4.312142 27649..27727 +
Gcaud2104.t1.intron2	Gcaud2104.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_112_length_49450_cov_4.312142 27888..27966 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2104.t1.stop1	Gcaud2104.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 28093..28095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+

mRNA sequence

>Gcaud2104.t1 ID=Gcaud2104.t1|Name=Gcaud2104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=135bp
MAAAVNMPDIKSGKLMQIHELDDWSPDERHGNAVRVIGRLKRVEFSKELV
FVEYHGKQLAVHTAQIADPVFGLDHIGKVFMYLGELERFENELLLRARIA
KEMKGVDMDLYDRCLKIRRDFDKNVLDATERKNG*

spliced messenger RNA

>Gcaud2104.t1 ID=Gcaud2104.t1|Name=Gcaud2104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCAGCAGTAAATATGCCAGATATAAAGAGTGGAAAGCTGATGCA
AATCCACGAACTAGACGACTGGAGTCCAGATGAGCGGCATGGAAATGCCG
TGCGAGTAATCGGAAGGCTAAAGCGCGTTGAGTTCAGCAAGGAGTTAGTT
TTTGTTGAGTACCATGGCAAGCAGCTTGCTGTACATACTGCTCAAATTGC
AGACCCTGTATTCGGTTTGGATCATATTGGAAAGGTGTTCATGTATCTTG
GAGAATTGGAGAGATTTGAGAACGAGCTGCTCTTAAGGGCAAGGATTGCT
AAAGAAATGAAGGGCGTGGATATGGATCTATACGATAGATGCCTGAAGAT
CAGGAGGGACTTTGACAAGAATGTCCTAGACGCCACCGAGCGGAAGAATG
GCTAG

protein sequence of Gcaud2104.t1

>Gcaud2104.t1 ID=Gcaud2104.t1|Name=Gcaud2104.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=135bp
MAAAVNMPDIKSGKLMQIHELDDWSPDERHGNAVRVIGRLKRVEFSKELV
FVEYHGKQLAVHTAQIADPVFGLDHIGKVFMYLGELERFENELLLRARIA
KEMKGVDMDLYDRCLKIRRDFDKNVLDATERKNG*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2104.t1 ID=Gcaud2104.t1|Name=Gcaud2104.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=563bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGCAGTAAATATGCCAGATATAAAGAGTGGAAAGCTGATGCA
AATCCACGAACTAGACGACTGGAGTCCAGATGAGCGGCATGGAAATGCCG
TGCGAGTAATCGGAAGGTGCGTCGGTAAGGCTAACTGTTGGCGCGATTTC
GATATCCATCCTCACACAAAGCTGCCATTTTTCTTTCTGTGACAGGCTAA
AGCGCGTTGAGTTCAGCAAGGAGTTAGTTTTTGTTGAGTACCATGGCAAG
CAGCTTGCTGTACATACTGCTCAAATTGCAGACCCTGTATTCGGTTTGGA
TCATATTGGAAAGGTGTTCATGTATCTTGGAGAATTGGAGAGATTTGAGA
ACGAGGTACGTTGAGTCCTGGGCAGGGTGTGTTCTGTGGATGCCCAATCT
GTCTAACAGGAGATATTCTTTGAACTGAAAATAGCTGCTCTTAAGGGCAA
GGATTGCTAAAGAAATGAAGGGCGTGGATATGGATCTATACGATAGATGC
CTGAAGATCAGGAGGGACTTTGACAAGAATGTCCTAGACGCCACCGAGCG
GAAGAATGGCTAG

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+

>Gcaud2104.t1 ID=Gcaud2104.t1|Name=Gcaud2104.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=405bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:27533..28095+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGCAGTAAATATGCCAGATATAAAGAGTGGAAAGCTGATGCA
AATCCACGAACTAGACGACTGGAGTCCAGATGAGCGGCATGGAAATGCCG
TGCGAGTAATCGGAAGGCTAAAGCGCGTTGAGTTCAGCAAGGAGTTAGTT
TTTGTTGAGTACCATGGCAAGCAGCTTGCTGTACATACTGCTCAAATTGC
AGACCCTGTATTCGGTTTGGATCATATTGGAAAGGTGTTCATGTATCTTG
GAGAATTGGAGAGATTTGAGAACGAGCTGCTCTTAAGGGCAAGGATTGCT
AAAGAAATGAAGGGCGTGGATATGGATCTATACGATAGATGCCTGAAGAT
CAGGAGGGACTTTGACAAGAATGTCCTAGACGCCACCGAGCGGAAGAATG
GCTAG