Gcaud2536.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2536.t1
Unique NameGcaud2536.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length520
Homology
BLAST of Gcaud2536.t1 vs. uniprot
Match: A0A2V3IEY8_9FLOR (Uncharacterized protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEY8_9FLOR)

HSP 1 Score: 322 bits (824), Expect = 9.990e-101
Identity = 180/441 (40.82%), Postives = 263/441 (59.64%), Query Frame = 0
Query:   87 ESLWEQTLKILNSTKPQFFDTLDAKLSRRSRTWRAGMIYEGLRATNHNCLALGKLYEVYYQPNEGLNLPNG-EELQRLMTTASQILRLCVARGLCSKHDVYTVNVLFQGVGNWDIVKRFLDFYTDCYSPRTVVRKARHLKKICIIAPAFVTSSNRRASISRVLKYVDVTIEATKGGKGSVAAIQQLKSHVPSHFIKQCFKLSFSILRDLMTKYKSE-----EHGVFDRFDFLKKWLTAVVAFIVISSGVHTPQAISMIEIPMD--FEDVLKKGGKDGFVELPTLPGRRTQSASLPVVVLPAFSTAILHFHIRVVNPMILSNVKTIEGESVGSFTTLLVDMATGKPMTSQGLAYQFRKFVIGNGLETQAASFNSLKGSVLKLFLKGFRRRQMLSNLSEGQFLDALARHMNSTPLQVKNYVGVRGSKEHIKTARELTRRLGEI 519
            + LW Q L+ + S++P+FF T  +KLSR SR W  G  YEG+ AT  NCL L K+++V+++P E  NL  G +E +RL  T SQ LRLC++RG+C ++D Y ++ LF  V   ++V+RF+DF+ +C+SPRTV RKARHLKK+C++A     S +R AS+ RV +Y+D  I A     G+    Q++K     H +K CF+L+ + L D++ +Y SE     E+      +F+ KW    VA++VI SG   P  IS +E+P D   E +L+     G V+  +L GRR  +  LP+V L A S   + F ++V+ P+I S   T E +  G+   LLV   +G  M    ++Y+F K+      E  + S +SLK S + +FLKGFR  ++    +EGQ LD LARH+N+T  QVK  VGVRGS E+   A EL R L +I
Sbjct:   74 QRLWLQNLQSICSSQPRFFSTSSSKLSRLSRVWGNGEQYEGVNATADNCLGLWKIHDVFWKPKEQWNLSQGSDEFRRLSNTVSQFLRLCISRGVCRRNDAYQMDALFGTVAVLEVVQRFVDFHVECFSPRTVQRKARHLKKVCMLASGLARSMSRSASLERVSRYLDDVISAYLRKTGAKRPPQKVKPTNSLHLLKTCFRLAHADLNDMIAQYNSESGRDPEYSSLALANFVSKWTCTFVAYVVIGSGGQNPLTISEMEVPGDEELEGILENAATAGSVQFESLRGRRAAALGLPMVSLTAKSARFIRFQVKVILPIISS--LTHEVQLTGTSRPLLVSTRSGMRMRPWQVSYEFHKYADQRCPEMSSVSLSSLKRSAMSVFLKGFRENELFHGHTEGQVLDVLARHLNTTSTQVKKCVGVRGSAEYKAIASELARCLEKI 512          
BLAST of Gcaud2536.t1 vs. uniprot
Match: A0A2V3IG72_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG72_9FLOR)

HSP 1 Score: 171 bits (433), Expect = 1.210e-45
Identity = 117/339 (34.51%), Postives = 171/339 (50.44%), Query Frame = 0
Query:  188 VNVLFQGVGNWDIVKRFLDFYTDCYSPRTVVRKARHLKKICIIAPAFVTSSNRRASISRVLKYVDVTIEATKGGKGSVAAIQQLKSHVPSHFIKQCFKLSFSILRDLMTKYKSE-----EHGVFDRFDFLKKWLTAVVAFIVISSGVHTPQAISMIEIPMD--FEDVLKKGGKDGFVELPTLPGRRTQSASLPVVVLPAFSTAILHFHIRVVNPMILSNVKTIEGESVGSFTTLLVDMATGKPMTSQGLAYQFRKFVIGNGLETQAASFNSLKGSVLKLFLKGFRRRQMLSNLSEGQFLDALARHMNSTPLQVKNYVGVRGSKEHIKTARELTRRLGEI 519
            ++ LF  V   ++V+RF+DF+ +C+SPRTV RKARHLKK+C++A     S +R AS+ RV +Y+D  I A     G+    Q++K     H +K CF+L+ + L D++ +Y SE     E+      +F+ KW    VA++VI SG   P  IS +E+P D   E +L+     G V+  +L GRR  +  LP           +H                 E  +  +   +L      +   S+ + + F KFV     +TQ            + FLKGFR  ++    +EGQ LD LARH+N+T  QVK  VGVRGS EH   A EL R L +I
Sbjct:    1 MDALFGTVAVLEVVQRFVDFHVECFSPRTVQRKARHLKKVCMLASGLARSMSRSASLERVSRYLDDVISAYLRKTGAKRPPQKVKPTNSLHLLKTCFRLAHADLNDMIAQYNSESGRDPEYSSLALANFVSKWTCTFVAYVVIGSGGQNPLTISEMEVPGDEELEGILENAATAGSVQFESLRGRRAAALGLP-----------MHE----------------ERYAYEAMACILRISQVRRSEVSRNV-FCFPKFV-----KTQCN----------ERFLKGFRENELFHGHTEGQVLDVLARHLNTTSTQVKKCVGVRGSAEHKAIASELARCLEKI 296          
The following BLAST results are available for this feature:
BLAST of Gcaud2536.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEY8_9FLOR9.990e-10140.82Uncharacterized protein n=3 Tax=Gracilariopsis cho... [more]
A0A2V3IG72_9FLOR1.210e-4534.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 336..369
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..335
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 370..389
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 390..519
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4339_length_2359_cov_4.120370contigNODE_4339_length_2359_cov_4.120370:488..2047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2536.t1Gcaud2536.t1Gracilaria caudata M_176_S67 malemRNANODE_4339_length_2359_cov_4.120370 488..2047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=520bp
MLLSQSRKRKHADRSAGSGRRPRKFLKSASLRPVSGTAEPTEKRDLVGKR
PCYDSLVNRDARVGLVTGTGADFPATQRADDKLLRTESLWEQTLKILNST
KPQFFDTLDAKLSRRSRTWRAGMIYEGLRATNHNCLALGKLYEVYYQPNE
GLNLPNGEELQRLMTTASQILRLCVARGLCSKHDVYTVNVLFQGVGNWDI
VKRFLDFYTDCYSPRTVVRKARHLKKICIIAPAFVTSSNRRASISRVLKY
VDVTIEATKGGKGSVAAIQQLKSHVPSHFIKQCFKLSFSILRDLMTKYKS
EEHGVFDRFDFLKKWLTAVVAFIVISSGVHTPQAISMIEIPMDFEDVLKK
GGKDGFVELPTLPGRRTQSASLPVVVLPAFSTAILHFHIRVVNPMILSNV
KTIEGESVGSFTTLLVDMATGKPMTSQGLAYQFRKFVIGNGLETQAASFN
SLKGSVLKLFLKGFRRRQMLSNLSEGQFLDALARHMNSTPLQVKNYVGVR
GSKEHIKTARELTRRLGEI*
back to top