Gcaud2536.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2536.t1
Unique Name	Gcaud2536.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4339_length_2359_cov_4.120370	contig	NODE_4339_length_2359_cov_4.120370:488..2047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2536	Gcaud2536	Gracilaria caudata M_176_S67 male	gene	NODE_4339_length_2359_cov_4.120370 488..2047 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2536.t1.start1	Gcaud2536.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4339_length_2359_cov_4.120370 488..490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2536.t1.CDS1	Gcaud2536.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4339_length_2359_cov_4.120370 488..2047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2536.t1.exon1	Gcaud2536.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4339_length_2359_cov_4.120370 488..2047 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2536.t1.stop1	Gcaud2536.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4339_length_2359_cov_4.120370 2045..2047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2536.t1	Gcaud2536.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4339_length_2359_cov_4.120370 488..2047 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+
coding sequence from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+

mRNA sequence

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=520bp
MLLSQSRKRKHADRSAGSGRRPRKFLKSASLRPVSGTAEPTEKRDLVGKR
PCYDSLVNRDARVGLVTGTGADFPATQRADDKLLRTESLWEQTLKILNST
KPQFFDTLDAKLSRRSRTWRAGMIYEGLRATNHNCLALGKLYEVYYQPNE
GLNLPNGEELQRLMTTASQILRLCVARGLCSKHDVYTVNVLFQGVGNWDI
VKRFLDFYTDCYSPRTVVRKARHLKKICIIAPAFVTSSNRRASISRVLKY
VDVTIEATKGGKGSVAAIQQLKSHVPSHFIKQCFKLSFSILRDLMTKYKS
EEHGVFDRFDFLKKWLTAVVAFIVISSGVHTPQAISMIEIPMDFEDVLKK
GGKDGFVELPTLPGRRTQSASLPVVVLPAFSTAILHFHIRVVNPMILSNV
KTIEGESVGSFTTLLVDMATGKPMTSQGLAYQFRKFVIGNGLETQAASFN
SLKGSVLKLFLKGFRRRQMLSNLSEGQFLDALARHMNSTPLQVKNYVGVR
GSKEHIKTARELTRRLGEI*

spliced messenger RNA

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTGTCACAGTCCAGGAAGAGGAAACACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCTAGAAAATTTCTGAAGTCGGCGTCATTGAGGCCGG
TATCTGGTACGGCAGAACCAACCGAGAAACGAGATCTAGTTGGGAAACGT
CCATGTTATGATTCTCTTGTCAATAGAGACGCTCGGGTTGGTTTGGTGAC
GGGGACGGGTGCAGATTTTCCTGCAACGCAAAGAGCTGATGATAAGCTCT
TGCGCACAGAATCGCTCTGGGAACAGACACTGAAGATCCTCAATTCAACT
AAGCCGCAGTTTTTCGATACACTTGATGCGAAGCTGTCTCGGAGATCAAG
AACTTGGAGGGCAGGAATGATATATGAAGGTTTGAGGGCAACGAATCACA
ACTGCCTTGCACTCGGAAAGTTGTACGAAGTGTATTACCAACCAAATGAG
GGACTGAACTTGCCGAATGGTGAAGAATTGCAACGACTAATGACTACCGC
CTCTCAGATTTTGAGACTTTGTGTGGCGCGTGGCTTGTGCTCCAAGCATG
ATGTGTACACAGTGAATGTACTCTTCCAGGGTGTCGGAAATTGGGACATT
GTGAAACGTTTTCTTGACTTTTACACTGACTGTTACTCCCCTCGAACTGT
GGTGCGGAAGGCACGACACCTCAAGAAGATATGCATAATAGCCCCTGCGT
TTGTTACCTCCAGCAACAGACGGGCAAGTATCTCACGAGTTTTGAAATAT
GTGGACGTCACCATCGAAGCAACTAAGGGGGGAAAAGGGTCTGTAGCTGC
AATACAGCAATTGAAATCGCATGTCCCTTCACATTTTATCAAGCAATGTT
TCAAGTTGTCGTTTTCTATCCTCAGGGATTTGATGACTAAGTACAAATCA
GAGGAACATGGGGTTTTCGATCGCTTTGATTTCTTAAAGAAATGGTTGAC
GGCAGTTGTTGCCTTCATTGTTATAAGTTCTGGGGTGCACACGCCGCAGG
CCATTTCAATGATTGAGATCCCGATGGATTTTGAGGATGTCCTGAAGAAG
GGTGGCAAGGATGGATTCGTGGAACTCCCAACCCTTCCAGGAAGACGAAC
TCAGTCCGCTAGCCTTCCGGTAGTAGTTCTCCCTGCATTTTCAACAGCCA
TTCTCCACTTTCACATCAGGGTGGTGAACCCGATGATCTTGTCAAATGTG
AAGACAATAGAAGGTGAGTCGGTAGGAAGTTTCACGACATTGCTCGTGGA
CATGGCCACTGGCAAGCCCATGACATCCCAAGGGCTTGCCTATCAGTTCA
GAAAGTTCGTTATCGGTAATGGACTCGAGACACAAGCTGCTAGCTTCAAC
TCATTGAAAGGAAGTGTCTTGAAGCTGTTTCTGAAAGGTTTTCGTAGACG
ACAAATGTTGTCAAACCTTTCCGAAGGGCAGTTTCTCGATGCTCTTGCTC
GACACATGAATTCTACTCCTTTGCAGGTTAAGAACTATGTCGGAGTTCGT
GGATCCAAAGAACACATTAAAACCGCTAGAGAACTCACGAGGCGACTGGG
TGAGATCTAA

protein sequence of Gcaud2536.t1

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=520bp
MLLSQSRKRKHADRSAGSGRRPRKFLKSASLRPVSGTAEPTEKRDLVGKR
PCYDSLVNRDARVGLVTGTGADFPATQRADDKLLRTESLWEQTLKILNST
KPQFFDTLDAKLSRRSRTWRAGMIYEGLRATNHNCLALGKLYEVYYQPNE
GLNLPNGEELQRLMTTASQILRLCVARGLCSKHDVYTVNVLFQGVGNWDI
VKRFLDFYTDCYSPRTVVRKARHLKKICIIAPAFVTSSNRRASISRVLKY
VDVTIEATKGGKGSVAAIQQLKSHVPSHFIKQCFKLSFSILRDLMTKYKS
EEHGVFDRFDFLKKWLTAVVAFIVISSGVHTPQAISMIEIPMDFEDVLKK
GGKDGFVELPTLPGRRTQSASLPVVVLPAFSTAILHFHIRVVNPMILSNV
KTIEGESVGSFTTLLVDMATGKPMTSQGLAYQFRKFVIGNGLETQAASFN
SLKGSVLKLFLKGFRRRQMLSNLSEGQFLDALARHMNSTPLQVKNYVGVR
GSKEHIKTARELTRRLGEI*

mRNA from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTGTCACAGTCCAGGAAGAGGAAACACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCTAGAAAATTTCTGAAGTCGGCGTCATTGAGGCCGG
TATCTGGTACGGCAGAACCAACCGAGAAACGAGATCTAGTTGGGAAACGT
CCATGTTATGATTCTCTTGTCAATAGAGACGCTCGGGTTGGTTTGGTGAC
GGGGACGGGTGCAGATTTTCCTGCAACGCAAAGAGCTGATGATAAGCTCT
TGCGCACAGAATCGCTCTGGGAACAGACACTGAAGATCCTCAATTCAACT
AAGCCGCAGTTTTTCGATACACTTGATGCGAAGCTGTCTCGGAGATCAAG
AACTTGGAGGGCAGGAATGATATATGAAGGTTTGAGGGCAACGAATCACA
ACTGCCTTGCACTCGGAAAGTTGTACGAAGTGTATTACCAACCAAATGAG
GGACTGAACTTGCCGAATGGTGAAGAATTGCAACGACTAATGACTACCGC
CTCTCAGATTTTGAGACTTTGTGTGGCGCGTGGCTTGTGCTCCAAGCATG
ATGTGTACACAGTGAATGTACTCTTCCAGGGTGTCGGAAATTGGGACATT
GTGAAACGTTTTCTTGACTTTTACACTGACTGTTACTCCCCTCGAACTGT
GGTGCGGAAGGCACGACACCTCAAGAAGATATGCATAATAGCCCCTGCGT
TTGTTACCTCCAGCAACAGACGGGCAAGTATCTCACGAGTTTTGAAATAT
GTGGACGTCACCATCGAAGCAACTAAGGGGGGAAAAGGGTCTGTAGCTGC
AATACAGCAATTGAAATCGCATGTCCCTTCACATTTTATCAAGCAATGTT
TCAAGTTGTCGTTTTCTATCCTCAGGGATTTGATGACTAAGTACAAATCA
GAGGAACATGGGGTTTTCGATCGCTTTGATTTCTTAAAGAAATGGTTGAC
GGCAGTTGTTGCCTTCATTGTTATAAGTTCTGGGGTGCACACGCCGCAGG
CCATTTCAATGATTGAGATCCCGATGGATTTTGAGGATGTCCTGAAGAAG
GGTGGCAAGGATGGATTCGTGGAACTCCCAACCCTTCCAGGAAGACGAAC
TCAGTCCGCTAGCCTTCCGGTAGTAGTTCTCCCTGCATTTTCAACAGCCA
TTCTCCACTTTCACATCAGGGTGGTGAACCCGATGATCTTGTCAAATGTG
AAGACAATAGAAGGTGAGTCGGTAGGAAGTTTCACGACATTGCTCGTGGA
CATGGCCACTGGCAAGCCCATGACATCCCAAGGGCTTGCCTATCAGTTCA
GAAAGTTCGTTATCGGTAATGGACTCGAGACACAAGCTGCTAGCTTCAAC
TCATTGAAAGGAAGTGTCTTGAAGCTGTTTCTGAAAGGTTTTCGTAGACG
ACAAATGTTGTCAAACCTTTCCGAAGGGCAGTTTCTCGATGCTCTTGCTC
GACACATGAATTCTACTCCTTTGCAGGTTAAGAACTATGTCGGAGTTCGT
GGATCCAAAGAACACATTAAAACCGCTAGAGAACTCACGAGGCGACTGGG
TGAGATCTAA

Coding sequence (CDS) from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+

>Gcaud2536.t1 ID=Gcaud2536.t1|Name=Gcaud2536.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1560bp|location=Sequence derived from alignment at NODE_4339_length_2359_cov_4.120370:488..2047+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTGTCACAGTCCAGGAAGAGGAAACACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCTAGAAAATTTCTGAAGTCGGCGTCATTGAGGCCGG
TATCTGGTACGGCAGAACCAACCGAGAAACGAGATCTAGTTGGGAAACGT
CCATGTTATGATTCTCTTGTCAATAGAGACGCTCGGGTTGGTTTGGTGAC
GGGGACGGGTGCAGATTTTCCTGCAACGCAAAGAGCTGATGATAAGCTCT
TGCGCACAGAATCGCTCTGGGAACAGACACTGAAGATCCTCAATTCAACT
AAGCCGCAGTTTTTCGATACACTTGATGCGAAGCTGTCTCGGAGATCAAG
AACTTGGAGGGCAGGAATGATATATGAAGGTTTGAGGGCAACGAATCACA
ACTGCCTTGCACTCGGAAAGTTGTACGAAGTGTATTACCAACCAAATGAG
GGACTGAACTTGCCGAATGGTGAAGAATTGCAACGACTAATGACTACCGC
CTCTCAGATTTTGAGACTTTGTGTGGCGCGTGGCTTGTGCTCCAAGCATG
ATGTGTACACAGTGAATGTACTCTTCCAGGGTGTCGGAAATTGGGACATT
GTGAAACGTTTTCTTGACTTTTACACTGACTGTTACTCCCCTCGAACTGT
GGTGCGGAAGGCACGACACCTCAAGAAGATATGCATAATAGCCCCTGCGT
TTGTTACCTCCAGCAACAGACGGGCAAGTATCTCACGAGTTTTGAAATAT
GTGGACGTCACCATCGAAGCAACTAAGGGGGGAAAAGGGTCTGTAGCTGC
AATACAGCAATTGAAATCGCATGTCCCTTCACATTTTATCAAGCAATGTT
TCAAGTTGTCGTTTTCTATCCTCAGGGATTTGATGACTAAGTACAAATCA
GAGGAACATGGGGTTTTCGATCGCTTTGATTTCTTAAAGAAATGGTTGAC
GGCAGTTGTTGCCTTCATTGTTATAAGTTCTGGGGTGCACACGCCGCAGG
CCATTTCAATGATTGAGATCCCGATGGATTTTGAGGATGTCCTGAAGAAG
GGTGGCAAGGATGGATTCGTGGAACTCCCAACCCTTCCAGGAAGACGAAC
TCAGTCCGCTAGCCTTCCGGTAGTAGTTCTCCCTGCATTTTCAACAGCCA
TTCTCCACTTTCACATCAGGGTGGTGAACCCGATGATCTTGTCAAATGTG
AAGACAATAGAAGGTGAGTCGGTAGGAAGTTTCACGACATTGCTCGTGGA
CATGGCCACTGGCAAGCCCATGACATCCCAAGGGCTTGCCTATCAGTTCA
GAAAGTTCGTTATCGGTAATGGACTCGAGACACAAGCTGCTAGCTTCAAC
TCATTGAAAGGAAGTGTCTTGAAGCTGTTTCTGAAAGGTTTTCGTAGACG
ACAAATGTTGTCAAACCTTTCCGAAGGGCAGTTTCTCGATGCTCTTGCTC
GACACATGAATTCTACTCCTTTGCAGGTTAAGAACTATGTCGGAGTTCGT
GGATCCAAAGAACACATTAAAACCGCTAGAGAACTCACGAGGCGACTGGG
TGAGATCTAA