Gcaud2103.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2103.t1
Unique Name	Gcaud2103.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:25656..26426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_10312T0
PFAMs	PH,Ras,RhoGAP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07208
KEGG Pathway	ko04072,ko04140,ko04150,ko04151,ko04152,ko04211,ko04218,ko04714,ko04910,ko04919,ko05165,ko05231,map04072,map04140,map04150,map04151,map04152,map04211,map04218,map04714,map04910,map04919,map05165,map05231
Evalue	1.78e-31
EggNOG OGs	COG1100@1\|root,KOG0395@2759\|Eukaryota
Description	GTPase activity
COG category	G
BRITE	ko00000,ko00001,ko04031

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2103	Gcaud2103	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 25656..26426 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2103.t1.start1	Gcaud2103.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 25656..25658 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2103.t1.CDS1	Gcaud2103.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 25656..26426 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2103.t1.exon1	Gcaud2103.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 25656..26426 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2103.t1.stop1	Gcaud2103.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 26424..26426 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2103.t1	Gcaud2103.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 25656..26426 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+

mRNA sequence

>Gcaud2103.t1 ID=Gcaud2103.t1|Name=Gcaud2103.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MSNVELSNHEAPPPPVPHLAAQALSPPPSLTVNDPYEVDYYLPPPPRSPF
RLRKRIAVLGARGVGKSAVAIQCTSDRFEPEYMPTCEDSFLWTTVVDGNC
YEVTIVDTDGQDEFPDFGQQYTIGIDGYILMFSVLNENSFHIIKRVHEKL
LDTLEVLNRKGTTELPRILVGNQVDETHARRVSRRVAQDFADENAIPYYE
TSALTGENVPDVFVRLLRIIHANQFGSSESSAKSSKSKSKSRLSQTQDNP
NFCTVQ*

spliced messenger RNA

>Gcaud2103.t1 ID=Gcaud2103.t1|Name=Gcaud2103.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAACGTCGAGCTGTCCAACCACGAGGCGCCGCCGCCGCCCGTCCC
CCATCTCGCTGCGCAAGCCCTGTCGCCCCCGCCGTCGCTTACCGTCAACG
ACCCCTACGAAGTGGACTACTATCTGCCACCGCCGCCGCGCAGCCCGTTC
CGCCTCCGCAAGCGCATTGCCGTTCTTGGAGCTCGCGGTGTCGGGAAGAG
CGCCGTGGCTATTCAATGTACTAGCGATAGGTTCGAGCCCGAGTACATGC
CCACCTGCGAGGACTCCTTCCTATGGACTACCGTTGTGGACGGCAATTGC
TACGAGGTTACCATCGTCGACACAGACGGCCAGGATGAGTTTCCCGACTT
TGGTCAGCAGTATACTATCGGCATTGATGGCTATATTCTCATGTTCTCCG
TGCTCAACGAAAACTCCTTCCACATAATTAAGCGCGTGCACGAGAAGCTC
CTGGACACCCTGGAGGTGCTCAACCGCAAGGGTACCACTGAATTGCCCAG
AATTCTTGTCGGCAACCAAGTAGATGAAACTCACGCTCGTCGTGTGTCGC
GGAGGGTAGCCCAGGACTTCGCCGACGAGAACGCTATCCCCTACTACGAA
ACTTCTGCGCTCACCGGCGAAAACGTTCCGGATGTCTTCGTTCGCCTTTT
GAGAATCATTCATGCCAACCAGTTTGGTTCTTCTGAGTCTTCTGCCAAAT
CTTCAAAGTCAAAATCAAAGAGTCGACTTTCGCAAACTCAAGACAATCCC
AATTTTTGCACTGTACAATAG

protein sequence of Gcaud2103.t1

>Gcaud2103.t1 ID=Gcaud2103.t1|Name=Gcaud2103.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MSNVELSNHEAPPPPVPHLAAQALSPPPSLTVNDPYEVDYYLPPPPRSPF
RLRKRIAVLGARGVGKSAVAIQCTSDRFEPEYMPTCEDSFLWTTVVDGNC
YEVTIVDTDGQDEFPDFGQQYTIGIDGYILMFSVLNENSFHIIKRVHEKL
LDTLEVLNRKGTTELPRILVGNQVDETHARRVSRRVAQDFADENAIPYYE
TSALTGENVPDVFVRLLRIIHANQFGSSESSAKSSKSKSKSRLSQTQDNP
NFCTVQ*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2103.t1 ID=Gcaud2103.t1|Name=Gcaud2103.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+ (Gracilaria caudata M_176_S67 male)
ATGTCGAACGTCGAGCTGTCCAACCACGAGGCGCCGCCGCCGCCCGTCCC
CCATCTCGCTGCGCAAGCCCTGTCGCCCCCGCCGTCGCTTACCGTCAACG
ACCCCTACGAAGTGGACTACTATCTGCCACCGCCGCCGCGCAGCCCGTTC
CGCCTCCGCAAGCGCATTGCCGTTCTTGGAGCTCGCGGTGTCGGGAAGAG
CGCCGTGGCTATTCAATGTACTAGCGATAGGTTCGAGCCCGAGTACATGC
CCACCTGCGAGGACTCCTTCCTATGGACTACCGTTGTGGACGGCAATTGC
TACGAGGTTACCATCGTCGACACAGACGGCCAGGATGAGTTTCCCGACTT
TGGTCAGCAGTATACTATCGGCATTGATGGCTATATTCTCATGTTCTCCG
TGCTCAACGAAAACTCCTTCCACATAATTAAGCGCGTGCACGAGAAGCTC
CTGGACACCCTGGAGGTGCTCAACCGCAAGGGTACCACTGAATTGCCCAG
AATTCTTGTCGGCAACCAAGTAGATGAAACTCACGCTCGTCGTGTGTCGC
GGAGGGTAGCCCAGGACTTCGCCGACGAGAACGCTATCCCCTACTACGAA
ACTTCTGCGCTCACCGGCGAAAACGTTCCGGATGTCTTCGTTCGCCTTTT
GAGAATCATTCATGCCAACCAGTTTGGTTCTTCTGAGTCTTCTGCCAAAT
CTTCAAAGTCAAAATCAAAGAGTCGACTTTCGCAAACTCAAGACAATCCC
AATTTTTGCACTGTACAATAG

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+

>Gcaud2103.t1 ID=Gcaud2103.t1|Name=Gcaud2103.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:25656..26426+ (Gracilaria caudata M_176_S67 male)
ATGTCGAACGTCGAGCTGTCCAACCACGAGGCGCCGCCGCCGCCCGTCCC
CCATCTCGCTGCGCAAGCCCTGTCGCCCCCGCCGTCGCTTACCGTCAACG
ACCCCTACGAAGTGGACTACTATCTGCCACCGCCGCCGCGCAGCCCGTTC
CGCCTCCGCAAGCGCATTGCCGTTCTTGGAGCTCGCGGTGTCGGGAAGAG
CGCCGTGGCTATTCAATGTACTAGCGATAGGTTCGAGCCCGAGTACATGC
CCACCTGCGAGGACTCCTTCCTATGGACTACCGTTGTGGACGGCAATTGC
TACGAGGTTACCATCGTCGACACAGACGGCCAGGATGAGTTTCCCGACTT
TGGTCAGCAGTATACTATCGGCATTGATGGCTATATTCTCATGTTCTCCG
TGCTCAACGAAAACTCCTTCCACATAATTAAGCGCGTGCACGAGAAGCTC
CTGGACACCCTGGAGGTGCTCAACCGCAAGGGTACCACTGAATTGCCCAG
AATTCTTGTCGGCAACCAAGTAGATGAAACTCACGCTCGTCGTGTGTCGC
GGAGGGTAGCCCAGGACTTCGCCGACGAGAACGCTATCCCCTACTACGAA
ACTTCTGCGCTCACCGGCGAAAACGTTCCGGATGTCTTCGTTCGCCTTTT
GAGAATCATTCATGCCAACCAGTTTGGTTCTTCTGAGTCTTCTGCCAAAT
CTTCAAAGTCAAAATCAAAGAGTCGACTTTCGCAAACTCAAGACAATCCC
AATTTTTGCACTGTACAATAG