Gcaud1730.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1730.t1
Unique Name	Gcaud1730.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	500

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1010_length_15078_cov_4.529993	contig	NODE_1010_length_15078_cov_4.529993:6167..8371 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707647.1
Preferred name	PTP4A2
PFAMs	DSPc,Y_phosphatase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01104,ko:K18041
GOs	GO:0000323,GO:0001667,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0004727,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006355,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008015,GO:0008138,GO:0008150,GO:0008152,GO:0009889,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010631,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0016020,GO:0016311,GO:0016477,GO:0016787,GO:0016788,GO:0016791,GO:0018995,GO:0019219,GO:0019222,GO:0019538,GO:0020016,GO:0020023,GO:0023051,GO:0023052,GO:0023056,GO:0030334,GO:0030335,GO:0030430,GO:0031323,GO:0031326,GO:0031410,GO:0031910,GO:0031982,GO:0032501,GO:0032879,GO:0032880,GO:0033643,GO:0033646,GO:0034097,GO:0035335,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042578,GO:0042995,GO:0043114,GO:0043117,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043412,GO:0043542,GO:0043656,GO:0043657,GO:0043687,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051270,GO:0051272,GO:0051674,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070062,GO:0070201,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0080090,GO:0090130,GO:0090132,GO:0090287,GO:0097708,GO:0098552,GO:0098562,GO:0120025,GO:0120038,GO:0140096,GO:1900746,GO:1901222,GO:1901224,GO:1901564,GO:1902531,GO:1902533,GO:1902547,GO:1903506,GO:1903561,GO:1904951,GO:1990823,GO:1990830,GO:2000112,GO:2000145,GO:2000147,GO:2001141
Evalue	2.94e-30
EggNOG OGs	KOG2836@1\|root,KOG2836@2759\|Eukaryota
EC	3.1.3.48
Description	protein tyrosine phosphatase activity
COG category	O
BRITE	ko00000,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1730	Gcaud1730	Gracilaria caudata M_176_S67 male	gene	NODE_1010_length_15078_cov_4.529993 6167..8371 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1	Gcaud1730.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1010_length_15078_cov_4.529993 6167..8371 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1.start1	Gcaud1730.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1010_length_15078_cov_4.529993 6167..6169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1.CDS1	Gcaud1730.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1010_length_15078_cov_4.529993 6167..6779 +
Gcaud1730.t1.CDS2	Gcaud1730.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1010_length_15078_cov_4.529993 7352..7459 +
Gcaud1730.t1.CDS3	Gcaud1730.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1010_length_15078_cov_4.529993 7533..7559 +
Gcaud1730.t1.CDS4	Gcaud1730.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1010_length_15078_cov_4.529993 7620..8371 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1.exon1	Gcaud1730.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1010_length_15078_cov_4.529993 6167..6779 +
Gcaud1730.t1.exon2	Gcaud1730.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1010_length_15078_cov_4.529993 7352..7459 +
Gcaud1730.t1.exon3	Gcaud1730.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1010_length_15078_cov_4.529993 7533..7559 +
Gcaud1730.t1.exon4	Gcaud1730.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1010_length_15078_cov_4.529993 7620..8371 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1.intron1	Gcaud1730.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1010_length_15078_cov_4.529993 6780..7351 +
Gcaud1730.t1.intron2	Gcaud1730.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1010_length_15078_cov_4.529993 7460..7532 +
Gcaud1730.t1.intron3	Gcaud1730.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1010_length_15078_cov_4.529993 7560..7619 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1730.t1.stop1	Gcaud1730.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1010_length_15078_cov_4.529993 8369..8371 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+
coding sequence from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+

mRNA sequence

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=500bp
MYGRKNSSYAPYTSRISGPLRALELAFEEVDSRKAEMYRRGMLPDYPTLV
EHGPLRILISSSPSDESLDDYAKLLRSYNVSHVVRVCEHMYSAENLEALG
FHVHEMPFADGEAPSSEVISRWLCLLDKVSALSKHARKNQSSPSSASLVS
EFDEGSSSDSVTEKQTTVAVHCAAGLGRAPVLAAIALVEAGMSPFEAVGS
IRASQCVQDGVMSACGAFDTASLQRIYDCLESRREKYFDEDGNVVDVTEA
KPEHSNDLEFYVLDKRLDWYLYPAEFYRESSYNTQGNGSGNAMGQMKPQG
LQSTAPSATPIPFCGKNEVLANAATAGEHYGTSHSSSGVGAAPCAANDQV
SGPVRTTKSSPRESERTKSPPNAQRKSSTSFSSCEERGKVLHELESSEKA
EPEPLHSRTSSPGDSMKPKSPLNVQGHSSTSSSSTEVREEGLHERESREK
AEPVLEVEKRSQGNEIREQSQAISFKSELTFHTLCSNLEIGSFPASFQF*

spliced messenger RNA

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCAATGTGTTCAAGATGGAGTTATGTCTGCTTGCGGGGC
ATTCGATACGGCTTCGTTACAGCGTATATATGACTGCCTCGAAAGTCGAA
GGGAGAAGTATTTCGATGAAGACGGAAATGTGGTGGATGTGACGGAAGCC
AAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAACGACT
AGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTACAATA
CCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCACAAGGT
CTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGGAAAAA
CGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCACTTCTC
ATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATCAAGTT
TCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAGAGGAC
TAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTCGTCCT
GCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGAAAGCC
GAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGCATGAA
GCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTCTTCGT
CCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGGAGAAA
GCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAAATACG
GGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCACACGT
TGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGTTTTGA

protein sequence of Gcaud1730.t1

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MYGRKNSSYAPYTSRISGPLRALELAFEEVDSRKAEMYRRGMLPDYPTLV
EHGPLRILISSSPSDESLDDYAKLLRSYNVSHVVRVCEHMYSAENLEALG
FHVHEMPFADGEAPSSEVISRWLCLLDKVSALSKHARKNQSSPSSASLVS
EFDEGSSSDSVTEKQTTVAVHCAAGLGRAPVLAAIALVEAGMSPFEAVGS
IRASQCVQDGVMSACGAFDTASLQRIYDCLESRREKYFDEDGNVVDVTEA
KPEHSNDLEFYVLDKRLDWYLYPAEFYRESSYNTQGNGSGNAMGQMKPQG
LQSTAPSATPIPFCGKNEVLANAATAGEHYGTSHSSSGVGAAPCAANDQV
SGPVRTTKSSPRESERTKSPPNAQRKSSTSFSSCEERGKVLHELESSEKA
EPEPLHSRTSSPGDSMKPKSPLNVQGHSSTSSSSTEVREEGLHERESREK
AEPVLEVEKRSQGNEIREQSQAISFKSELTFHTLCSNLEIGSFPASFQF*

mRNA from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2205bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCGTAGAGGCGCAATGAATGGAAGGCAGATGGCTTTCGT
GGAAAGCTACACACGTCGCCCTCCACCTTCCCCGGTCAAGCCTCGGCAAC
GCTCGCGATCCGGTAGTTTTGTTGGCTCTTTTTGGCCCTCATTCAAGGCA
GCACGCCCTTTCCGTCCCAGGAGCCCGGGGCACAATTCTTCCGCAACTCG
CCAGCAGATGAATGCCAACCCGTGCAAACGTTCGGAGATTTAGAACGTGG
CGCCACTGAAAAGGTCATGTTTTGCGGAGCTACACGCATTTTAGATGACT
GGTAACCTATGATACACTTAAGACAACTTCGATAAAGCTTGTCCTTACGA
TTATAGTTTCGTTTCGCCCCTCGAAGCGCATTGCTGGGTAGTTCCTTCGA
ATTGACTATTGCGAATCGAAAGCAAGGCTTCGCTACACCTGCTGCCTTCT
GTTTGAAGTGTGCCCCAATTTTTTGGACAAGGCACATGTGAATCCTGGGC
TACACTTAGACCCTACTCGATCTTCAATCCTTCAGACGTCATCGCGGACA
GGATTTCATGAATCGTGCCTTTGCCAGCTTTGCAGAATGTGTTCAAGATG
GAGTTATGTCTGCTTGCGGGGCATTCGATACGGCTTCGTTACAGCGTATA
TATGACTGCCTCGAAAGTCGAAGGGAGAAGTATTTCGATGAAGGTACAGT
TTGACTTCTTCATTTCTCCTTTTCTTCCTCAGATGACCTGACATTTTCTC
AACGTGACCCTTGAAGACGGAAATGTGGTGGATGTGACGGAAGGTGAGCA
TTGGAAATTAAGTGTTCGCCGCGTACTCTTTACATCTAACCGATTTGGCG
TAGCCAAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAA
CGACTAGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTA
CAATACCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCAC
AAGGTCTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGG
AAAAACGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCAC
TTCTCATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATC
AAGTTTCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAG
AGGACTAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTC
GTCCTGCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGA
AAGCCGAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGC
ATGAAGCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTC
TTCGTCCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGG
AGAAAGCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAA
ATACGGGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCA
CACGTTGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGT
TTTGA

Coding sequence (CDS) from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+

>Gcaud1730.t1 ID=Gcaud1730.t1|Name=Gcaud1730.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1500bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:6167..8371+ (Gracilaria caudata M_176_S67 male)
ATGTATGGCCGAAAGAACTCCTCCTATGCCCCATATACGAGCCGCATCTC
GGGGCCTTTGCGAGCTCTCGAGCTTGCTTTCGAGGAAGTCGATTCTCGCA
AAGCGGAAATGTATCGCCGTGGGATGCTCCCCGACTACCCGACCCTAGTT
GAACATGGACCGCTGCGCATTTTGATTTCTTCCTCTCCGTCTGACGAGTC
ACTCGACGACTATGCGAAGCTCTTGCGAAGCTATAACGTTTCTCATGTCG
TCCGAGTGTGCGAACATATGTACTCAGCCGAAAATCTGGAGGCACTCGGC
TTCCACGTACACGAAATGCCTTTCGCTGACGGTGAAGCGCCGAGCAGCGA
GGTCATTTCGCGTTGGCTTTGCCTTCTCGACAAAGTGTCCGCGCTGTCCA
AACATGCTCGAAAGAACCAAAGCAGTCCTTCCTCAGCATCTCTCGTTTCT
GAGTTTGATGAAGGCTCATCTTCTGACTCCGTTACTGAGAAGCAGACGAC
AGTTGCTGTTCACTGCGCAGCTGGACTAGGACGCGCTCCAGTGCTTGCTG
CCATAGCGTTGGTGGAAGCCGGCATGAGTCCGTTCGAAGCCGTCGGTTCT
ATTAGGGCTTCGCAATGTGTTCAAGATGGAGTTATGTCTGCTTGCGGGGC
ATTCGATACGGCTTCGTTACAGCGTATATATGACTGCCTCGAAAGTCGAA
GGGAGAAGTATTTCGATGAAGACGGAAATGTGGTGGATGTGACGGAAGCC
AAACCTGAACACTCCAACGACCTCGAGTTCTATGTTCTCGACAAACGACT
AGACTGGTACTTGTATCCTGCCGAGTTCTACAGGGAGTCCTCGTACAATA
CCCAAGGAAACGGAAGTGGAAATGCCATGGGACAAATGAAGCCACAAGGT
CTGCAATCTACAGCACCCTCGGCAACACCAATCCCTTTCTGTGGGAAAAA
CGAAGTTCTTGCTAATGCCGCAACCGCCGGTGAACATTATGGCACTTCTC
ATTCATCTTCAGGCGTTGGAGCTGCTCCGTGTGCTGCAAATGATCAAGTT
TCAGGGCCCGTTCGCACTACAAAGTCGTCTCCAAGAGAAAGCGAGAGGAC
TAAAAGTCCACCAAATGCCCAAAGAAAGTCTTCAACTTCTTTTTCGTCCT
GCGAGGAGAGGGGGAAAGTTCTCCATGAGCTGGAGAGCAGCGAGAAAGCC
GAGCCAGAGCCTTTACATAGTAGAACCTCGTCCCCAGGAGATAGCATGAA
GCCAAAAAGTCCACTGAATGTTCAAGGACATTCTTCAACTTCGTCTTCGT
CCACTGAGGTGAGGGAGGAAGGTCTTCATGAGCGTGAAAGTAGGGAGAAA
GCCGAGCCAGTATTGGAGGTCGAAAAACGTTCTCAAGGCAATGAAATACG
GGAGCAATCCCAAGCAATATCTTTTAAGTCGGAGTTGACTTTTCACACGT
TGTGCTCTAATCTGGAGATCGGCAGCTTTCCAGCTAGTTTCCAGTTTTGA