Gcaud2115.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2115.t1
Unique Name	Gcaud2115.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1126_length_13510_cov_4.780237	contig	NODE_1126_length_13510_cov_4.780237:6161..7189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	573065.Astex_2960
Preferred name	era
PFAMs	KH_2,MMR_HSR1
Max annot lvl	204458\|Caulobacterales
KEGG ko	ko:K03595
Evalue	5.48e-42
EggNOG OGs	COG1159@1\|root,COG1159@2\|Bacteria,1MUKT@1224\|Proteobacteria,2TSHM@28211\|Alphaproteobacteria,2KFWU@204458\|Caulobacterales
Description	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
COG category	S
BRITE	ko00000,ko03009,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2115	Gcaud2115	Gracilaria caudata M_176_S67 male	gene	NODE_1126_length_13510_cov_4.780237 6161..7189 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2115.t1.start1	Gcaud2115.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1126_length_13510_cov_4.780237 6161..6163 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2115.t1.CDS1	Gcaud2115.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1126_length_13510_cov_4.780237 6161..7189 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2115.t1.exon1	Gcaud2115.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1126_length_13510_cov_4.780237 6161..7189 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2115.t1.stop1	Gcaud2115.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1126_length_13510_cov_4.780237 7187..7189 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2115.t1	Gcaud2115.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1126_length_13510_cov_4.780237 6161..7189 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+
coding sequence from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+

mRNA sequence

>Gcaud2115.t1 ID=Gcaud2115.t1|Name=Gcaud2115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=343bp
MSRNIFIQVRKSVTPWAQKGFVKRFTTGRSIHTSDYSAIIPDIPANTRTA
SVAIIGAPNAGKSSLSNAMIECRVSAVSRKVNATRFRTVGAFTQGNRQLM
FWDTPGVVERQFVKSLGSERKELTTCGWGAAADADVVVLVVDTSRGERYW
RRCARISEQVAEIRSNNQRNGGLVLVLNKCDKVSPRSRILQAADFFQTDI
QNFADAFEDRVFMVSAYNGRGVHDLRRKLLDMTVEGDFEVPPDTKHCEDD
LDLIRQHVWEKLLHRVHEELPYRCRFQNVRMIELPNGDVYVSEIIRVPRS
SAVGIVVGPGGQVIEWIRETAQQSASEALGRTVHLKLRVAVA*

spliced messenger RNA

>Gcaud2115.t1 ID=Gcaud2115.t1|Name=Gcaud2115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGAAACATTTTCATTCAGGTGAGGAAGTCAGTAACGCCATGGGC
GCAAAAGGGCTTCGTAAAGCGTTTTACCACCGGACGAAGTATACACACAT
CAGACTACTCTGCAATAATACCAGATATTCCAGCCAACACAAGGACTGCT
TCAGTTGCTATAATAGGAGCCCCGAACGCTGGGAAATCATCTTTGTCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTATCTCGTAAAGTGAATGCAA
CGCGTTTTCGTACGGTTGGTGCTTTCACCCAAGGAAATCGTCAGCTTATG
TTTTGGGATACCCCAGGCGTTGTAGAACGTCAGTTTGTGAAGTCATTGGG
TTCCGAGCGAAAAGAACTTACAACCTGCGGGTGGGGAGCTGCTGCGGACG
CAGATGTTGTCGTATTGGTCGTAGATACTTCGAGGGGTGAAAGATACTGG
AGAAGATGTGCACGAATATCTGAGCAAGTGGCCGAAATTCGAAGCAACAA
TCAGCGAAATGGAGGCCTTGTGCTTGTGTTAAACAAGTGTGACAAGGTCT
CACCACGATCACGTATCCTGCAGGCCGCAGATTTCTTTCAAACTGACATT
CAGAACTTTGCAGATGCGTTCGAAGACCGAGTCTTCATGGTGTCTGCATA
TAATGGTCGCGGCGTGCATGACTTGCGCCGCAAGCTCCTTGACATGACTG
TTGAAGGTGATTTCGAAGTTCCCCCAGACACTAAGCATTGTGAGGACGAT
CTAGACCTTATCAGGCAGCACGTGTGGGAAAAACTGTTGCATCGTGTTCA
TGAAGAACTTCCCTACCGTTGCAGGTTTCAGAATGTAAGAATGATCGAGC
TTCCAAACGGTGATGTGTACGTTTCTGAAATCATAAGAGTCCCAAGGTCA
AGCGCGGTAGGTATCGTCGTTGGTCCTGGAGGCCAAGTGATTGAATGGAT
TCGCGAGACAGCACAGCAGAGCGCGAGCGAAGCGCTAGGGCGAACAGTTC
ACCTAAAACTTCGGGTTGCAGTGGCGTAG

protein sequence of Gcaud2115.t1

>Gcaud2115.t1 ID=Gcaud2115.t1|Name=Gcaud2115.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=343bp
MSRNIFIQVRKSVTPWAQKGFVKRFTTGRSIHTSDYSAIIPDIPANTRTA
SVAIIGAPNAGKSSLSNAMIECRVSAVSRKVNATRFRTVGAFTQGNRQLM
FWDTPGVVERQFVKSLGSERKELTTCGWGAAADADVVVLVVDTSRGERYW
RRCARISEQVAEIRSNNQRNGGLVLVLNKCDKVSPRSRILQAADFFQTDI
QNFADAFEDRVFMVSAYNGRGVHDLRRKLLDMTVEGDFEVPPDTKHCEDD
LDLIRQHVWEKLLHRVHEELPYRCRFQNVRMIELPNGDVYVSEIIRVPRS
SAVGIVVGPGGQVIEWIRETAQQSASEALGRTVHLKLRVAVA*

mRNA from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2115.t1 ID=Gcaud2115.t1|Name=Gcaud2115.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGAAACATTTTCATTCAGGTGAGGAAGTCAGTAACGCCATGGGC
GCAAAAGGGCTTCGTAAAGCGTTTTACCACCGGACGAAGTATACACACAT
CAGACTACTCTGCAATAATACCAGATATTCCAGCCAACACAAGGACTGCT
TCAGTTGCTATAATAGGAGCCCCGAACGCTGGGAAATCATCTTTGTCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTATCTCGTAAAGTGAATGCAA
CGCGTTTTCGTACGGTTGGTGCTTTCACCCAAGGAAATCGTCAGCTTATG
TTTTGGGATACCCCAGGCGTTGTAGAACGTCAGTTTGTGAAGTCATTGGG
TTCCGAGCGAAAAGAACTTACAACCTGCGGGTGGGGAGCTGCTGCGGACG
CAGATGTTGTCGTATTGGTCGTAGATACTTCGAGGGGTGAAAGATACTGG
AGAAGATGTGCACGAATATCTGAGCAAGTGGCCGAAATTCGAAGCAACAA
TCAGCGAAATGGAGGCCTTGTGCTTGTGTTAAACAAGTGTGACAAGGTCT
CACCACGATCACGTATCCTGCAGGCCGCAGATTTCTTTCAAACTGACATT
CAGAACTTTGCAGATGCGTTCGAAGACCGAGTCTTCATGGTGTCTGCATA
TAATGGTCGCGGCGTGCATGACTTGCGCCGCAAGCTCCTTGACATGACTG
TTGAAGGTGATTTCGAAGTTCCCCCAGACACTAAGCATTGTGAGGACGAT
CTAGACCTTATCAGGCAGCACGTGTGGGAAAAACTGTTGCATCGTGTTCA
TGAAGAACTTCCCTACCGTTGCAGGTTTCAGAATGTAAGAATGATCGAGC
TTCCAAACGGTGATGTGTACGTTTCTGAAATCATAAGAGTCCCAAGGTCA
AGCGCGGTAGGTATCGTCGTTGGTCCTGGAGGCCAAGTGATTGAATGGAT
TCGCGAGACAGCACAGCAGAGCGCGAGCGAAGCGCTAGGGCGAACAGTTC
ACCTAAAACTTCGGGTTGCAGTGGCGTAG

Coding sequence (CDS) from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+

>Gcaud2115.t1 ID=Gcaud2115.t1|Name=Gcaud2115.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1029bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:6161..7189+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGAAACATTTTCATTCAGGTGAGGAAGTCAGTAACGCCATGGGC
GCAAAAGGGCTTCGTAAAGCGTTTTACCACCGGACGAAGTATACACACAT
CAGACTACTCTGCAATAATACCAGATATTCCAGCCAACACAAGGACTGCT
TCAGTTGCTATAATAGGAGCCCCGAACGCTGGGAAATCATCTTTGTCGAA
TGCAATGATTGAATGTCGAGTTTCAGCGGTATCTCGTAAAGTGAATGCAA
CGCGTTTTCGTACGGTTGGTGCTTTCACCCAAGGAAATCGTCAGCTTATG
TTTTGGGATACCCCAGGCGTTGTAGAACGTCAGTTTGTGAAGTCATTGGG
TTCCGAGCGAAAAGAACTTACAACCTGCGGGTGGGGAGCTGCTGCGGACG
CAGATGTTGTCGTATTGGTCGTAGATACTTCGAGGGGTGAAAGATACTGG
AGAAGATGTGCACGAATATCTGAGCAAGTGGCCGAAATTCGAAGCAACAA
TCAGCGAAATGGAGGCCTTGTGCTTGTGTTAAACAAGTGTGACAAGGTCT
CACCACGATCACGTATCCTGCAGGCCGCAGATTTCTTTCAAACTGACATT
CAGAACTTTGCAGATGCGTTCGAAGACCGAGTCTTCATGGTGTCTGCATA
TAATGGTCGCGGCGTGCATGACTTGCGCCGCAAGCTCCTTGACATGACTG
TTGAAGGTGATTTCGAAGTTCCCCCAGACACTAAGCATTGTGAGGACGAT
CTAGACCTTATCAGGCAGCACGTGTGGGAAAAACTGTTGCATCGTGTTCA
TGAAGAACTTCCCTACCGTTGCAGGTTTCAGAATGTAAGAATGATCGAGC
TTCCAAACGGTGATGTGTACGTTTCTGAAATCATAAGAGTCCCAAGGTCA
AGCGCGGTAGGTATCGTCGTTGGTCCTGGAGGCCAAGTGATTGAATGGAT
TCGCGAGACAGCACAGCAGAGCGCGAGCGAAGCGCTAGGGCGAACAGTTC
ACCTAAAACTTCGGGTTGCAGTGGCGTAG