Gcaud2437.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2437.t1
Unique NameGcaud2437.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length462
Homology
BLAST of Gcaud2437.t1 vs. uniprot
Match: A0A2V3IUL8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUL8_9FLOR)

HSP 1 Score: 159 bits (403), Expect = 5.920e-40
Identity = 139/467 (29.76%), Postives = 224/467 (47.97%), Query Frame = 0
Query:    1 MMETSLNIHPSTWNVMSYVFLTLFINTLLEFLLYNVLASKATLDILRGQKVDLFDSRYGLVSLHSVYWGRRRNRNLLLLLGAVVIMTEILFAFSFSTVTLPDSIDRRVWNQPPHSD--ITSEQLDGFDL--RASVFPWAVGDRCFNSTGQVRDMAPEEENPHCGV-----GRGYIWNATFLMRRPYFDPDNSTVPCGVSLQNDEAQFEFPRLGLPGSTIRSDKLKTVSESSGCEPLSSLFEQESETLSNFSIPLLERENTHVLRSSRMICLLEQETCLLVEDENQYVLVFTTDRLSNLEAVAFRASGKALENLRDQARQLRLMIALRLNDV--------VNPSRRVSRSEASRRTLTRRAFIEVAQTFLVVAVEEGLAGVRARKVDRPIFQGTRQSATIRRIAAIPLFILLLLAVMLLTTDLILRVKVANQ-KKQVDGLVDFGR---VKLTKQWMREVAVEDLKANG 446
            M E  L I PS  NV+ Y  + L +  L E L  +++++K+T D+L G  ++   S+ G+ SLH  YWGR RNR +L+ LG  VI TE+LF FSFS+ T+     R+VW QP H+   I +   +  +L    + FP AV  RC   T   R M     N   G      G  +  N  + +R PY    +  V C  + +  +A F  PR+    +  + + +     +SG + + S+ +     + +  +   + E   V       C      CL+ + +  +VLVF T        V  +ASG ALE L ++ RQ+RL++ +   ++        ++PS RV+          +     +A+  +V A EEG+ G++A  V+R +  G+RQ AT        +  L L+  +L+ + L++RV +A    KQ    V F R   ++ TKQ+MR   +EDL+  G
Sbjct:    1 MTEIQLGIDPSILNVIKYGVVALILTPLFEILADSLVSAKSTYDVLSGHTIEFSHSQLGIFSLHGTYWGRSRNRFMLIALGFAVIATELLFEFSFSSTTVDLEEVRQVWKQPSHAQRYIPAAGRERIELYREPTEFPGAVALRC---TRGPRTMLRYRSNHTDGNERYQGGLEFRLNGNYTIRMPYRARSDDEVLCSATQKTAKATFIVPRVVRTRTASQVEGVSLEVPTSGYKYIKSIVQDNPPPVIDLFL-YTDTEVGEVRSGDNGTC--AGSWCLIRDRDRSFVLVFWTFESI---VVVIKASGNALEGLTERGRQVRLILTIIYENLFTGIGFNELSPSLRVAE---------KNDMETLARWMIVAANEEGVGGLKAATVNRTVVGGSRQMATATGYLPASVSGLALIGSLLMVSCLLVRVMIARMGDKQQPFAVRFWRQWRLQTTKQYMRAKMLEDLQHYG 449          
BLAST of Gcaud2437.t1 vs. uniprot
Match: A0A2V3ITH0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 149 bits (377), Expect = 2.370e-36
Identity = 133/465 (28.60%), Postives = 225/465 (48.39%), Query Frame = 0
Query:    1 MMETSLNIHPSTWNVMSYVFLTLFINTLLEFLLYNVLASKATLDILRGQKVDLFDSRYGLVSLHSVYWGRRRNRNLLLLLGAVVIMTEILFAFSFSTVTLPDSIDRRVWNQPPHSD---ITSEQLDGFDLRASVFPWAVG--DRCFNSTGQVRDMAPEEENPHCGVGRGYIWNATFLMRRPYFDP-DNSTVPCGVSLQNDEAQFEFP-----------RLGLPGSTIRSDKLKTVSESSGCEPLSSLFEQESETLSNFSIPLLERENTHVLRSSRMICLLEQETCLLVEDENQYVLVFTT----DRLSNLEAVAFRASGKALENLRDQA-RQLRLMIA-LRLNDVVNPSRRVSRSEASRRTLTRRAFIEVAQTFLVVAVEEGLAGVRARKVDRPIFQGTRQSATIRRIAAIPLFILLLLAVMLLTTDLILRVKVANQKKQVDGLVDFGRVKLTKQWMREVAVEDL 442
            M E SLN+ PS WN++ YV L+L I    EFLL+ +   KA  DILRG+ V L D+R G+ SLHS +WGR RNR LLL++G  VI  E+LF FSFS+  +  S   +VW+QP H     I+SE++  F    ++ P      + C      +R     ++     +   Y  N  + +RRPY    DN+T+ C       +A F  P             G        DK    S  +  +    L  + + T+ +  + +   +N+  + S  +           +  ++ + L   +    D   ++  +    SG AL  L DQA RQ+R +++ L LN V +  R  S   +  R  T    +++A   L+VA EEG+AG+R  K  R +  G ++ A+++R+A IP  ++  + ++ ++ +++L + +A  +++         V+++ Q++R+    DL
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYLISSEEVH-FMREPALLPVEAANIEGCVEGEFNMRRKEKTKDEFQQTIME-YSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFGAFEDKFYNRSIYADVDM--KLRFKANLTIDDTKLYMFNGKNSICIGSKSLAVFGTAYLLCGLRAQSAFSLAVGSLHEDDERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWH--RPASEGASKLRKTTLEQIVQIA---LIVANEEGVAGIRRVKASREVLDGVQERASVKRLAIIPGALIGGMLLLFISMNVLLAICIAKAQRKTGQ----HSVRISTQFLRKQLRNDL 452          
The following BLAST results are available for this feature:
BLAST of Gcaud2437.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUL8_9FLOR5.920e-4029.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH0_9FLOR2.370e-3628.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 386..407
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 408..461
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..95
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..385
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 385..407

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_42_length_67898_cov_4.520993contigNODE_42_length_67898_cov_4.520993:24149..25534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2437.t1Gcaud2437.t1Gracilaria caudata M_176_S67 malemRNANODE_42_length_67898_cov_4.520993 24149..25534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
MMETSLNIHPSTWNVMSYVFLTLFINTLLEFLLYNVLASKATLDILRGQK
VDLFDSRYGLVSLHSVYWGRRRNRNLLLLLGAVVIMTEILFAFSFSTVTL
PDSIDRRVWNQPPHSDITSEQLDGFDLRASVFPWAVGDRCFNSTGQVRDM
APEEENPHCGVGRGYIWNATFLMRRPYFDPDNSTVPCGVSLQNDEAQFEF
PRLGLPGSTIRSDKLKTVSESSGCEPLSSLFEQESETLSNFSIPLLEREN
THVLRSSRMICLLEQETCLLVEDENQYVLVFTTDRLSNLEAVAFRASGKA
LENLRDQARQLRLMIALRLNDVVNPSRRVSRSEASRRTLTRRAFIEVAQT
FLVVAVEEGLAGVRARKVDRPIFQGTRQSATIRRIAAIPLFILLLLAVML
LTTDLILRVKVANQKKQVDGLVDFGRVKLTKQWMREVAVEDLKANGLEGL
AEEVKLGTRHL*
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