Gcaud2437.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2437.t1
Unique Name	Gcaud2437.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:24149..25534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2437	Gcaud2437	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 24149..25534 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2437.t1.start1	Gcaud2437.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 24149..24151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2437.t1.CDS1	Gcaud2437.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 24149..25534 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2437.t1.exon1	Gcaud2437.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 24149..25534 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2437.t1.stop1	Gcaud2437.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 25532..25534 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2437.t1	Gcaud2437.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 24149..25534 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+

mRNA sequence

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp
MMETSLNIHPSTWNVMSYVFLTLFINTLLEFLLYNVLASKATLDILRGQK
VDLFDSRYGLVSLHSVYWGRRRNRNLLLLLGAVVIMTEILFAFSFSTVTL
PDSIDRRVWNQPPHSDITSEQLDGFDLRASVFPWAVGDRCFNSTGQVRDM
APEEENPHCGVGRGYIWNATFLMRRPYFDPDNSTVPCGVSLQNDEAQFEF
PRLGLPGSTIRSDKLKTVSESSGCEPLSSLFEQESETLSNFSIPLLEREN
THVLRSSRMICLLEQETCLLVEDENQYVLVFTTDRLSNLEAVAFRASGKA
LENLRDQARQLRLMIALRLNDVVNPSRRVSRSEASRRTLTRRAFIEVAQT
FLVVAVEEGLAGVRARKVDRPIFQGTRQSATIRRIAAIPLFILLLLAVML
LTTDLILRVKVANQKKQVDGLVDFGRVKLTKQWMREVAVEDLKANGLEGL
AEEVKLGTRHL*

spliced messenger RNA

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGAAACCAGTCTCAACATTCATCCCTCCACATGGAACGTTATGAG
CTATGTGTTCCTCACACTCTTCATCAACACCTTGCTCGAGTTTCTTCTAT
ATAATGTCCTGGCATCAAAAGCCACCTTAGACATTCTCCGTGGTCAAAAG
GTTGATCTGTTTGATTCGCGGTACGGTTTAGTTTCTCTTCATTCTGTGTA
CTGGGGACGCCGTCGCAACCGCAACTTACTTTTACTCCTCGGAGCCGTCG
TCATCATGACTGAAATCCTGTTTGCGTTTTCGTTCTCAACCGTCACACTT
CCAGACTCCATTGACAGAAGAGTTTGGAATCAACCTCCGCACAGCGATAT
CACATCCGAACAGCTTGACGGATTTGACCTTCGAGCCTCCGTGTTTCCGT
GGGCCGTGGGCGACCGATGTTTTAATAGCACCGGTCAAGTGCGTGATATG
GCTCCGGAAGAAGAAAACCCGCACTGTGGAGTTGGACGAGGATACATATG
GAACGCCACTTTCTTGATGCGAAGACCTTATTTTGATCCGGACAACAGCA
CTGTGCCATGCGGTGTTTCGTTGCAGAACGATGAAGCACAGTTTGAATTC
CCTCGTTTGGGTTTACCCGGCAGCACGATCAGAAGCGATAAACTGAAAAC
TGTTTCCGAGTCGAGTGGTTGCGAACCGCTATCAAGCTTGTTCGAGCAGG
AATCGGAGACGCTCTCGAACTTCTCAATCCCGTTGCTTGAGCGGGAAAAT
ACTCACGTTCTGAGAAGCAGTCGCATGATCTGCTTACTAGAGCAAGAGAC
ATGTCTACTTGTTGAGGACGAGAACCAGTATGTTCTGGTATTCACTACTG
ATAGGCTAAGCAACTTGGAGGCCGTGGCGTTTCGAGCTTCAGGCAAGGCC
TTGGAGAACCTCCGTGACCAAGCTCGACAACTGCGGTTAATGATTGCACT
ACGCCTAAACGATGTTGTGAATCCAAGCCGAAGGGTTTCGAGAAGTGAAG
CATCGCGCAGAACTTTGACGAGAAGAGCCTTCATAGAAGTGGCACAAACT
TTCTTGGTAGTAGCCGTGGAGGAAGGACTAGCAGGAGTGCGAGCCAGAAA
AGTCGACCGACCGATATTTCAAGGCACAAGACAATCTGCCACAATCAGAC
GAATCGCTGCAATCCCGCTTTTCATCCTACTGCTGCTGGCCGTGATGCTT
CTTACAACAGACTTGATCCTAAGAGTGAAGGTGGCAAACCAAAAGAAACA
GGTGGACGGTCTGGTAGACTTTGGAAGAGTCAAACTTACGAAGCAATGGA
TGCGAGAGGTTGCTGTGGAGGATCTGAAGGCGAATGGGCTGGAGGGTCTT
GCGGAGGAAGTCAAATTGGGAACCAGGCATTTGTGA

protein sequence of Gcaud2437.t1

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
MMETSLNIHPSTWNVMSYVFLTLFINTLLEFLLYNVLASKATLDILRGQK
VDLFDSRYGLVSLHSVYWGRRRNRNLLLLLGAVVIMTEILFAFSFSTVTL
PDSIDRRVWNQPPHSDITSEQLDGFDLRASVFPWAVGDRCFNSTGQVRDM
APEEENPHCGVGRGYIWNATFLMRRPYFDPDNSTVPCGVSLQNDEAQFEF
PRLGLPGSTIRSDKLKTVSESSGCEPLSSLFEQESETLSNFSIPLLEREN
THVLRSSRMICLLEQETCLLVEDENQYVLVFTTDRLSNLEAVAFRASGKA
LENLRDQARQLRLMIALRLNDVVNPSRRVSRSEASRRTLTRRAFIEVAQT
FLVVAVEEGLAGVRARKVDRPIFQGTRQSATIRRIAAIPLFILLLLAVML
LTTDLILRVKVANQKKQVDGLVDFGRVKLTKQWMREVAVEDLKANGLEGL
AEEVKLGTRHL*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+ (Gracilaria caudata M_176_S67 male)
ATGATGGAAACCAGTCTCAACATTCATCCCTCCACATGGAACGTTATGAG
CTATGTGTTCCTCACACTCTTCATCAACACCTTGCTCGAGTTTCTTCTAT
ATAATGTCCTGGCATCAAAAGCCACCTTAGACATTCTCCGTGGTCAAAAG
GTTGATCTGTTTGATTCGCGGTACGGTTTAGTTTCTCTTCATTCTGTGTA
CTGGGGACGCCGTCGCAACCGCAACTTACTTTTACTCCTCGGAGCCGTCG
TCATCATGACTGAAATCCTGTTTGCGTTTTCGTTCTCAACCGTCACACTT
CCAGACTCCATTGACAGAAGAGTTTGGAATCAACCTCCGCACAGCGATAT
CACATCCGAACAGCTTGACGGATTTGACCTTCGAGCCTCCGTGTTTCCGT
GGGCCGTGGGCGACCGATGTTTTAATAGCACCGGTCAAGTGCGTGATATG
GCTCCGGAAGAAGAAAACCCGCACTGTGGAGTTGGACGAGGATACATATG
GAACGCCACTTTCTTGATGCGAAGACCTTATTTTGATCCGGACAACAGCA
CTGTGCCATGCGGTGTTTCGTTGCAGAACGATGAAGCACAGTTTGAATTC
CCTCGTTTGGGTTTACCCGGCAGCACGATCAGAAGCGATAAACTGAAAAC
TGTTTCCGAGTCGAGTGGTTGCGAACCGCTATCAAGCTTGTTCGAGCAGG
AATCGGAGACGCTCTCGAACTTCTCAATCCCGTTGCTTGAGCGGGAAAAT
ACTCACGTTCTGAGAAGCAGTCGCATGATCTGCTTACTAGAGCAAGAGAC
ATGTCTACTTGTTGAGGACGAGAACCAGTATGTTCTGGTATTCACTACTG
ATAGGCTAAGCAACTTGGAGGCCGTGGCGTTTCGAGCTTCAGGCAAGGCC
TTGGAGAACCTCCGTGACCAAGCTCGACAACTGCGGTTAATGATTGCACT
ACGCCTAAACGATGTTGTGAATCCAAGCCGAAGGGTTTCGAGAAGTGAAG
CATCGCGCAGAACTTTGACGAGAAGAGCCTTCATAGAAGTGGCACAAACT
TTCTTGGTAGTAGCCGTGGAGGAAGGACTAGCAGGAGTGCGAGCCAGAAA
AGTCGACCGACCGATATTTCAAGGCACAAGACAATCTGCCACAATCAGAC
GAATCGCTGCAATCCCGCTTTTCATCCTACTGCTGCTGGCCGTGATGCTT
CTTACAACAGACTTGATCCTAAGAGTGAAGGTGGCAAACCAAAAGAAACA
GGTGGACGGTCTGGTAGACTTTGGAAGAGTCAAACTTACGAAGCAATGGA
TGCGAGAGGTTGCTGTGGAGGATCTGAAGGCGAATGGGCTGGAGGGTCTT
GCGGAGGAAGTCAAATTGGGAACCAGGCATTTGTGA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+

>Gcaud2437.t1 ID=Gcaud2437.t1|Name=Gcaud2437.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1386bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:24149..25534+ (Gracilaria caudata M_176_S67 male)
ATGATGGAAACCAGTCTCAACATTCATCCCTCCACATGGAACGTTATGAG
CTATGTGTTCCTCACACTCTTCATCAACACCTTGCTCGAGTTTCTTCTAT
ATAATGTCCTGGCATCAAAAGCCACCTTAGACATTCTCCGTGGTCAAAAG
GTTGATCTGTTTGATTCGCGGTACGGTTTAGTTTCTCTTCATTCTGTGTA
CTGGGGACGCCGTCGCAACCGCAACTTACTTTTACTCCTCGGAGCCGTCG
TCATCATGACTGAAATCCTGTTTGCGTTTTCGTTCTCAACCGTCACACTT
CCAGACTCCATTGACAGAAGAGTTTGGAATCAACCTCCGCACAGCGATAT
CACATCCGAACAGCTTGACGGATTTGACCTTCGAGCCTCCGTGTTTCCGT
GGGCCGTGGGCGACCGATGTTTTAATAGCACCGGTCAAGTGCGTGATATG
GCTCCGGAAGAAGAAAACCCGCACTGTGGAGTTGGACGAGGATACATATG
GAACGCCACTTTCTTGATGCGAAGACCTTATTTTGATCCGGACAACAGCA
CTGTGCCATGCGGTGTTTCGTTGCAGAACGATGAAGCACAGTTTGAATTC
CCTCGTTTGGGTTTACCCGGCAGCACGATCAGAAGCGATAAACTGAAAAC
TGTTTCCGAGTCGAGTGGTTGCGAACCGCTATCAAGCTTGTTCGAGCAGG
AATCGGAGACGCTCTCGAACTTCTCAATCCCGTTGCTTGAGCGGGAAAAT
ACTCACGTTCTGAGAAGCAGTCGCATGATCTGCTTACTAGAGCAAGAGAC
ATGTCTACTTGTTGAGGACGAGAACCAGTATGTTCTGGTATTCACTACTG
ATAGGCTAAGCAACTTGGAGGCCGTGGCGTTTCGAGCTTCAGGCAAGGCC
TTGGAGAACCTCCGTGACCAAGCTCGACAACTGCGGTTAATGATTGCACT
ACGCCTAAACGATGTTGTGAATCCAAGCCGAAGGGTTTCGAGAAGTGAAG
CATCGCGCAGAACTTTGACGAGAAGAGCCTTCATAGAAGTGGCACAAACT
TTCTTGGTAGTAGCCGTGGAGGAAGGACTAGCAGGAGTGCGAGCCAGAAA
AGTCGACCGACCGATATTTCAAGGCACAAGACAATCTGCCACAATCAGAC
GAATCGCTGCAATCCCGCTTTTCATCCTACTGCTGCTGGCCGTGATGCTT
CTTACAACAGACTTGATCCTAAGAGTGAAGGTGGCAAACCAAAAGAAACA
GGTGGACGGTCTGGTAGACTTTGGAAGAGTCAAACTTACGAAGCAATGGA
TGCGAGAGGTTGCTGTGGAGGATCTGAAGGCGAATGGGCTGGAGGGTCTT
GCGGAGGAAGTCAAATTGGGAACCAGGCATTTGTGA