Gcaud2113.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2113.t1
Unique Name	Gcaud2113.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1126_length_13510_cov_4.780237	contig	NODE_1126_length_13510_cov_4.780237:3022..4416 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra77146
PFAMs	Bromodomain,HAT_KAT11,KIX_2,ZZ,zf-TAZ
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K04498
KEGG Pathway	ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Evalue	2.96e-13
EggNOG OGs	COG5076@1\|root,KOG1474@2759\|Eukaryota,KOG1778@2759\|Eukaryota,3Q7GA@4776\|Peronosporales
EC	2.3.1.48
Description	Histone acetylation protein
COG category	K
BRITE	ko00000,ko00001,ko01000,ko03000,ko03029,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2113	Gcaud2113	Gracilaria caudata M_176_S67 male	gene	NODE_1126_length_13510_cov_4.780237 3022..4416 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2113.t1.stop1	Gcaud2113.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1126_length_13510_cov_4.780237 3022..3024 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2113.t1.CDS1	Gcaud2113.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1126_length_13510_cov_4.780237 3022..4416 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2113.t1.exon1	Gcaud2113.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1126_length_13510_cov_4.780237 3022..4416 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2113.t1.start1	Gcaud2113.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1126_length_13510_cov_4.780237 4414..4416 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2113.t1	Gcaud2113.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1126_length_13510_cov_4.780237 3022..4416 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416-
coding sequence from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416-

mRNA sequence

>Gcaud2113.t1 ID=Gcaud2113.t1|Name=Gcaud2113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp
MTFIPESQTPTIYDVSYDNKIPQRELNDFVVTRGDEKVSICALDDSSKKH
SDIVARGTLVAANGSKTIKVVSAPLKEWCIEYSQTPSLWVRTNDVWYRLL
KPAKEYARTHETARRRFELCSRIFILGTTMSPSECNYKLFVQLLSGTYGK
MKAYSEKELLMEKDFILAQIKNLGNESLSSIPFVKELREKKTTNGKKNSS
SSKKKDPSSSSGSISISTNGNGEVKPWVPTGRLDKEGQTRLTKKLDKIVS
QISKHKLAYPFLVPVDPVREQCPDYLERIKKPMDYGTIKKNLEKGLYTNL
EDLAEDMRQVKLNCCQYNGEDHQFSQWAIELCNKFEAMAASAEEAELATM
SKRLAKKRKASDALPPTGKSKKNGKGSKKNAKSSPDPSLSGSPSKDDDST
GSKLCARSESQKCERMQTSGSKYCSDECGLIVARQRIEELTKAGFSVDDY
IKHHVTKALVHSRS*

spliced messenger RNA

>Gcaud2113.t1 ID=Gcaud2113.t1|Name=Gcaud2113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCATTCCCGAGAGTCAGACGCCTACCATCTATGATGTGTCCTA
CGACAACAAGATTCCTCAGCGCGAACTTAATGACTTTGTAGTCACCCGCG
GCGATGAGAAAGTCTCCATCTGTGCCCTGGACGACTCGTCTAAGAAACAT
TCTGATATCGTCGCACGAGGAACTTTGGTGGCTGCCAACGGCTCCAAGAC
AATCAAGGTCGTCTCTGCTCCGTTAAAGGAGTGGTGCATCGAGTATTCTC
AAACCCCTTCGCTGTGGGTTCGCACCAACGATGTTTGGTATCGTCTTCTC
AAGCCAGCCAAGGAGTATGCTCGCACCCACGAGACTGCGAGGCGTCGATT
TGAACTTTGTTCGAGGATATTCATTCTCGGAACCACTATGAGTCCTAGTG
AGTGCAACTACAAACTGTTTGTGCAGCTACTGTCCGGCACGTATGGTAAA
ATGAAAGCTTACTCGGAAAAGGAGTTGCTAATGGAGAAGGACTTCATTCT
GGCACAGATCAAGAACCTCGGCAACGAATCGCTCTCTAGCATTCCCTTTG
TAAAGGAGTTGCGTGAAAAGAAAACGACCAATGGAAAAAAGAATAGTTCG
AGTTCAAAGAAGAAAGATCCGTCGTCTAGCAGTGGAAGCATATCCATATC
TACTAATGGAAATGGTGAAGTCAAGCCATGGGTACCAACTGGCAGGCTTG
ACAAGGAAGGTCAGACCAGACTGACAAAGAAACTCGATAAGATTGTTAGT
CAGATCAGCAAGCATAAGCTTGCTTATCCATTCCTCGTTCCCGTTGATCC
CGTAAGAGAACAATGTCCGGACTATTTGGAGAGAATAAAGAAACCAATGG
ATTATGGAACTATCAAGAAGAACTTGGAAAAGGGATTATACACAAATCTT
GAAGACCTTGCTGAGGATATGCGACAGGTGAAGCTCAACTGTTGCCAGTA
TAACGGAGAGGATCACCAGTTTTCACAATGGGCTATCGAGTTATGTAACA
AATTTGAGGCCATGGCTGCAAGCGCCGAAGAAGCAGAACTAGCTACTATG
AGCAAGAGGCTAGCAAAGAAGAGAAAGGCATCCGATGCATTGCCCCCGAC
TGGGAAGTCGAAGAAGAACGGGAAAGGTAGCAAGAAGAATGCCAAGAGTA
GTCCCGATCCCTCTCTAAGCGGTTCTCCATCGAAAGATGACGACTCAACG
GGGTCAAAATTGTGTGCGAGATCGGAATCGCAAAAATGTGAACGCATGCA
AACTTCTGGCAGCAAGTATTGCTCCGACGAATGCGGGCTCATAGTTGCCC
GACAGCGGATAGAAGAGTTGACTAAGGCCGGGTTCTCCGTCGATGATTAT
ATCAAACACCACGTTACCAAAGCTCTTGTACACAGCAGAAGCTAG

protein sequence of Gcaud2113.t1

>Gcaud2113.t1 ID=Gcaud2113.t1|Name=Gcaud2113.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=465bp
MTFIPESQTPTIYDVSYDNKIPQRELNDFVVTRGDEKVSICALDDSSKKH
SDIVARGTLVAANGSKTIKVVSAPLKEWCIEYSQTPSLWVRTNDVWYRLL
KPAKEYARTHETARRRFELCSRIFILGTTMSPSECNYKLFVQLLSGTYGK
MKAYSEKELLMEKDFILAQIKNLGNESLSSIPFVKELREKKTTNGKKNSS
SSKKKDPSSSSGSISISTNGNGEVKPWVPTGRLDKEGQTRLTKKLDKIVS
QISKHKLAYPFLVPVDPVREQCPDYLERIKKPMDYGTIKKNLEKGLYTNL
EDLAEDMRQVKLNCCQYNGEDHQFSQWAIELCNKFEAMAASAEEAELATM
SKRLAKKRKASDALPPTGKSKKNGKGSKKNAKSSPDPSLSGSPSKDDDST
GSKLCARSESQKCERMQTSGSKYCSDECGLIVARQRIEELTKAGFSVDDY
IKHHVTKALVHSRS*

mRNA from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2113.t1 ID=Gcaud2113.t1|Name=Gcaud2113.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416- (Gracilaria caudata M_176_S67 male)
ATGACTTTCATTCCCGAGAGTCAGACGCCTACCATCTATGATGTGTCCTA
CGACAACAAGATTCCTCAGCGCGAACTTAATGACTTTGTAGTCACCCGCG
GCGATGAGAAAGTCTCCATCTGTGCCCTGGACGACTCGTCTAAGAAACAT
TCTGATATCGTCGCACGAGGAACTTTGGTGGCTGCCAACGGCTCCAAGAC
AATCAAGGTCGTCTCTGCTCCGTTAAAGGAGTGGTGCATCGAGTATTCTC
AAACCCCTTCGCTGTGGGTTCGCACCAACGATGTTTGGTATCGTCTTCTC
AAGCCAGCCAAGGAGTATGCTCGCACCCACGAGACTGCGAGGCGTCGATT
TGAACTTTGTTCGAGGATATTCATTCTCGGAACCACTATGAGTCCTAGTG
AGTGCAACTACAAACTGTTTGTGCAGCTACTGTCCGGCACGTATGGTAAA
ATGAAAGCTTACTCGGAAAAGGAGTTGCTAATGGAGAAGGACTTCATTCT
GGCACAGATCAAGAACCTCGGCAACGAATCGCTCTCTAGCATTCCCTTTG
TAAAGGAGTTGCGTGAAAAGAAAACGACCAATGGAAAAAAGAATAGTTCG
AGTTCAAAGAAGAAAGATCCGTCGTCTAGCAGTGGAAGCATATCCATATC
TACTAATGGAAATGGTGAAGTCAAGCCATGGGTACCAACTGGCAGGCTTG
ACAAGGAAGGTCAGACCAGACTGACAAAGAAACTCGATAAGATTGTTAGT
CAGATCAGCAAGCATAAGCTTGCTTATCCATTCCTCGTTCCCGTTGATCC
CGTAAGAGAACAATGTCCGGACTATTTGGAGAGAATAAAGAAACCAATGG
ATTATGGAACTATCAAGAAGAACTTGGAAAAGGGATTATACACAAATCTT
GAAGACCTTGCTGAGGATATGCGACAGGTGAAGCTCAACTGTTGCCAGTA
TAACGGAGAGGATCACCAGTTTTCACAATGGGCTATCGAGTTATGTAACA
AATTTGAGGCCATGGCTGCAAGCGCCGAAGAAGCAGAACTAGCTACTATG
AGCAAGAGGCTAGCAAAGAAGAGAAAGGCATCCGATGCATTGCCCCCGAC
TGGGAAGTCGAAGAAGAACGGGAAAGGTAGCAAGAAGAATGCCAAGAGTA
GTCCCGATCCCTCTCTAAGCGGTTCTCCATCGAAAGATGACGACTCAACG
GGGTCAAAATTGTGTGCGAGATCGGAATCGCAAAAATGTGAACGCATGCA
AACTTCTGGCAGCAAGTATTGCTCCGACGAATGCGGGCTCATAGTTGCCC
GACAGCGGATAGAAGAGTTGACTAAGGCCGGGTTCTCCGTCGATGATTAT
ATCAAACACCACGTTACCAAAGCTCTTGTACACAGCAGAAGCTAG

Coding sequence (CDS) from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416-

>Gcaud2113.t1 ID=Gcaud2113.t1|Name=Gcaud2113.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1395bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:3022..4416- (Gracilaria caudata M_176_S67 male)
ATGACTTTCATTCCCGAGAGTCAGACGCCTACCATCTATGATGTGTCCTA
CGACAACAAGATTCCTCAGCGCGAACTTAATGACTTTGTAGTCACCCGCG
GCGATGAGAAAGTCTCCATCTGTGCCCTGGACGACTCGTCTAAGAAACAT
TCTGATATCGTCGCACGAGGAACTTTGGTGGCTGCCAACGGCTCCAAGAC
AATCAAGGTCGTCTCTGCTCCGTTAAAGGAGTGGTGCATCGAGTATTCTC
AAACCCCTTCGCTGTGGGTTCGCACCAACGATGTTTGGTATCGTCTTCTC
AAGCCAGCCAAGGAGTATGCTCGCACCCACGAGACTGCGAGGCGTCGATT
TGAACTTTGTTCGAGGATATTCATTCTCGGAACCACTATGAGTCCTAGTG
AGTGCAACTACAAACTGTTTGTGCAGCTACTGTCCGGCACGTATGGTAAA
ATGAAAGCTTACTCGGAAAAGGAGTTGCTAATGGAGAAGGACTTCATTCT
GGCACAGATCAAGAACCTCGGCAACGAATCGCTCTCTAGCATTCCCTTTG
TAAAGGAGTTGCGTGAAAAGAAAACGACCAATGGAAAAAAGAATAGTTCG
AGTTCAAAGAAGAAAGATCCGTCGTCTAGCAGTGGAAGCATATCCATATC
TACTAATGGAAATGGTGAAGTCAAGCCATGGGTACCAACTGGCAGGCTTG
ACAAGGAAGGTCAGACCAGACTGACAAAGAAACTCGATAAGATTGTTAGT
CAGATCAGCAAGCATAAGCTTGCTTATCCATTCCTCGTTCCCGTTGATCC
CGTAAGAGAACAATGTCCGGACTATTTGGAGAGAATAAAGAAACCAATGG
ATTATGGAACTATCAAGAAGAACTTGGAAAAGGGATTATACACAAATCTT
GAAGACCTTGCTGAGGATATGCGACAGGTGAAGCTCAACTGTTGCCAGTA
TAACGGAGAGGATCACCAGTTTTCACAATGGGCTATCGAGTTATGTAACA
AATTTGAGGCCATGGCTGCAAGCGCCGAAGAAGCAGAACTAGCTACTATG
AGCAAGAGGCTAGCAAAGAAGAGAAAGGCATCCGATGCATTGCCCCCGAC
TGGGAAGTCGAAGAAGAACGGGAAAGGTAGCAAGAAGAATGCCAAGAGTA
GTCCCGATCCCTCTCTAAGCGGTTCTCCATCGAAAGATGACGACTCAACG
GGGTCAAAATTGTGTGCGAGATCGGAATCGCAAAAATGTGAACGCATGCA
AACTTCTGGCAGCAAGTATTGCTCCGACGAATGCGGGCTCATAGTTGCCC
GACAGCGGATAGAAGAGTTGACTAAGGCCGGGTTCTCCGTCGATGATTAT
ATCAAACACCACGTTACCAAAGCTCTTGTACACAGCAGAAGCTAG