Gcaud2575.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2575.t1
Unique Name	Gcaud2575.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:6077..8101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2575	Gcaud2575	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 6077..8101 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1	Gcaud2575.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 6077..8101 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1.start1	Gcaud2575.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 6077..6079 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1.CDS1	Gcaud2575.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 6077..6224 +
Gcaud2575.t1.CDS2	Gcaud2575.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 6381..8101 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1.exon1	Gcaud2575.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 6077..6224 +
Gcaud2575.t1.exon2	Gcaud2575.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 6381..8101 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1.intron1	Gcaud2575.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_427_length_25918_cov_4.599721 6225..6380 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2575.t1.stop1	Gcaud2575.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 8099..8101 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+

mRNA sequence

>Gcaud2575.t1 ID=Gcaud2575.t1|Name=Gcaud2575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=623bp
MVEKGKRKDAVQPASSTQAAKRHKLAVKRPSAAPALQNTKKSKTACSALP
LVKDVDNVKSEGTTGEVSLSARDEPLPAGEQLPSEAKTQGSHSKERPKNK
SAGEKQSEQRKEVVAQQGDGSRIRSKRRKVESEIKNTQREKEHRASKSPK
KASNGNVVTTLKRDKPEPPPQTPSQTSPHASKSKKGLAKRATPKSPAAKS
SRPKKETPKETREFVEECIVDEGTAAMPNPEPRASSGKKRKRAQRPTKGY
HTEVVLDSSEHDVNPDQKSMDLILNARSRLPWWRATESLVSLPSKPQNLE
DLLKFYVMAVIRSCVRESWSAEKLKHCFDKDPTSSRGKAFLAISSSLLLM
ERARHMGQCHVKWRPELIQELVQRRIIEWSKVPKHVSFDHFAGCDVCLGQ
REATIRLWLRGDRYDSSDFWPGSSRVDVLSSEERLDQDIMSVAVELVGST
KNERFIAIGEAKDRVDAEFWVDPQCLRKCLLFHELVHATAIIAQDLRILI
EDELRDGVVHLDMRNRVPGDEKLGVPERLERYLVQAVTENRDFLKRRTKH
LMEIIRLGDIYFSSVEEELIDSGAPEGRRARKTPQMYDPPIDLNDEKYKD
RIERIVSLTQQREINASFATFG*

spliced messenger RNA

>Gcaud2575.t1 ID=Gcaud2575.t1|Name=Gcaud2575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAAAGGGGAAGCGGAAGGATGCAGTCCAACCTGCAAGCTCCAC
GCAAGCGGCAAAACGTCATAAACTTGCAGTGAAGCGCCCCTCCGCGGCAC
CAGCTCTTCAGAACACGAAGAAATCAAAAACAGCTTGTTCGGCATTACCA
CTTGTGAAGGACGTCGATAATGTCAAGTCGGAAGGGACGACTGGTGAAGT
GTCCCTTTCTGCTAGGGATGAACCCCTTCCTGCGGGTGAACAGCTCCCTT
CAGAAGCAAAGACTCAAGGATCACACTCGAAGGAGCGCCCCAAGAACAAG
TCTGCGGGTGAAAAGCAAAGTGAGCAAAGGAAAGAGGTAGTTGCTCAACA
AGGCGACGGTAGCAGAATTCGCTCAAAACGACGTAAGGTTGAGTCGGAGA
TAAAAAACACACAGCGCGAAAAAGAGCACAGGGCATCAAAATCGCCTAAA
AAAGCTTCGAACGGCAACGTCGTCACAACACTCAAAAGAGACAAGCCGGA
ACCACCCCCTCAAACACCGTCTCAAACGTCGCCGCACGCAAGCAAATCAA
AAAAGGGATTGGCGAAGAGGGCTACTCCCAAGTCACCTGCCGCCAAGTCA
TCCCGCCCTAAGAAAGAAACACCGAAGGAAACTAGAGAATTCGTCGAGGA
GTGTATTGTCGACGAAGGAACCGCCGCGATGCCTAACCCCGAACCGCGAG
CTTCCTCCGGGAAGAAAAGGAAAAGGGCCCAGCGCCCAACTAAAGGTTAC
CACACTGAAGTAGTTCTGGACTCTTCCGAGCATGATGTCAACCCTGATCA
AAAGTCCATGGATCTCATACTTAACGCAAGGTCCCGTCTCCCGTGGTGGC
GCGCCACAGAGTCATTAGTAAGCCTCCCTTCGAAGCCACAGAACCTAGAA
GATCTGCTAAAGTTCTACGTCATGGCTGTTATAAGGTCATGCGTTCGAGA
ATCGTGGAGTGCGGAGAAGCTGAAGCATTGTTTCGACAAGGATCCAACCT
CTTCAAGAGGAAAAGCGTTTCTGGCAATCAGCTCTAGTTTGTTGCTGATG
GAACGTGCGAGACATATGGGGCAATGTCATGTGAAATGGAGACCTGAGCT
TATTCAAGAACTTGTGCAACGGCGAATCATAGAATGGTCGAAAGTCCCAA
AGCATGTTTCGTTCGACCATTTCGCTGGGTGTGATGTTTGCCTCGGTCAG
CGTGAAGCCACCATCCGTCTGTGGCTCCGTGGAGATCGGTATGACTCAAG
CGATTTCTGGCCTGGAAGTAGTCGGGTTGATGTGCTTTCCTCGGAAGAAA
GGTTAGATCAAGACATTATGTCAGTTGCCGTGGAACTAGTTGGCAGCACG
AAGAATGAACGTTTCATTGCAATTGGTGAAGCAAAAGACAGGGTGGACGC
CGAGTTTTGGGTAGACCCTCAGTGTCTGCGGAAATGTCTCTTGTTCCATG
AACTTGTGCACGCCACGGCCATTATTGCTCAAGATTTACGTATTCTCATC
GAGGATGAACTTCGAGACGGAGTGGTTCACTTAGATATGCGCAATCGTGT
TCCGGGAGATGAGAAACTAGGGGTTCCTGAAAGGCTTGAGAGGTATTTGG
TCCAGGCTGTTACGGAGAACAGGGATTTCTTGAAGAGAAGAACGAAGCAT
TTGATGGAGATCATACGTCTGGGAGACATATACTTTTCCTCAGTTGAAGA
AGAATTAATTGACTCTGGAGCTCCGGAAGGCAGGAGGGCTCGCAAAACTC
CGCAGATGTACGATCCTCCCATAGATCTCAACGATGAAAAGTACAAGGAT
CGGATTGAGAGGATCGTCTCGCTAACGCAGCAACGGGAGATAAACGCCTC
ATTTGCTACCTTTGGGTAG

protein sequence of Gcaud2575.t1

>Gcaud2575.t1 ID=Gcaud2575.t1|Name=Gcaud2575.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=623bp
MVEKGKRKDAVQPASSTQAAKRHKLAVKRPSAAPALQNTKKSKTACSALP
LVKDVDNVKSEGTTGEVSLSARDEPLPAGEQLPSEAKTQGSHSKERPKNK
SAGEKQSEQRKEVVAQQGDGSRIRSKRRKVESEIKNTQREKEHRASKSPK
KASNGNVVTTLKRDKPEPPPQTPSQTSPHASKSKKGLAKRATPKSPAAKS
SRPKKETPKETREFVEECIVDEGTAAMPNPEPRASSGKKRKRAQRPTKGY
HTEVVLDSSEHDVNPDQKSMDLILNARSRLPWWRATESLVSLPSKPQNLE
DLLKFYVMAVIRSCVRESWSAEKLKHCFDKDPTSSRGKAFLAISSSLLLM
ERARHMGQCHVKWRPELIQELVQRRIIEWSKVPKHVSFDHFAGCDVCLGQ
REATIRLWLRGDRYDSSDFWPGSSRVDVLSSEERLDQDIMSVAVELVGST
KNERFIAIGEAKDRVDAEFWVDPQCLRKCLLFHELVHATAIIAQDLRILI
EDELRDGVVHLDMRNRVPGDEKLGVPERLERYLVQAVTENRDFLKRRTKH
LMEIIRLGDIYFSSVEEELIDSGAPEGRRARKTPQMYDPPIDLNDEKYKD
RIERIVSLTQQREINASFATFG*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2575.t1 ID=Gcaud2575.t1|Name=Gcaud2575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2025bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+ (Gracilaria caudata M_176_S67 male)
ATGGTGGAAAAGGGGAAGCGGAAGGATGCAGTCCAACCTGCAAGCTCCAC
GCAAGCGGCAAAACGTCATAAACTTGCAGTGAAGCGCCCCTCCGCGGCAC
CAGCTCTTCAGAACACGAAGAAATCAAAAACAGCTTGTTCGGCATTACGT
AAGTCACCAAAGCGACCTTCGAAAGCAAAGCCATCCGACAGTCACATCAA
GATTGCTGTTGCAAAGGCAGTCGATGACTCAAAACATCTCAAGGAATGCA
AAGGAGAAGCTAGAAAGGACTTGTATTCCAGTATTGTTGACCTCCTTACT
GAAGCACTTGTGAAGGACGTCGATAATGTCAAGTCGGAAGGGACGACTGG
TGAAGTGTCCCTTTCTGCTAGGGATGAACCCCTTCCTGCGGGTGAACAGC
TCCCTTCAGAAGCAAAGACTCAAGGATCACACTCGAAGGAGCGCCCCAAG
AACAAGTCTGCGGGTGAAAAGCAAAGTGAGCAAAGGAAAGAGGTAGTTGC
TCAACAAGGCGACGGTAGCAGAATTCGCTCAAAACGACGTAAGGTTGAGT
CGGAGATAAAAAACACACAGCGCGAAAAAGAGCACAGGGCATCAAAATCG
CCTAAAAAAGCTTCGAACGGCAACGTCGTCACAACACTCAAAAGAGACAA
GCCGGAACCACCCCCTCAAACACCGTCTCAAACGTCGCCGCACGCAAGCA
AATCAAAAAAGGGATTGGCGAAGAGGGCTACTCCCAAGTCACCTGCCGCC
AAGTCATCCCGCCCTAAGAAAGAAACACCGAAGGAAACTAGAGAATTCGT
CGAGGAGTGTATTGTCGACGAAGGAACCGCCGCGATGCCTAACCCCGAAC
CGCGAGCTTCCTCCGGGAAGAAAAGGAAAAGGGCCCAGCGCCCAACTAAA
GGTTACCACACTGAAGTAGTTCTGGACTCTTCCGAGCATGATGTCAACCC
TGATCAAAAGTCCATGGATCTCATACTTAACGCAAGGTCCCGTCTCCCGT
GGTGGCGCGCCACAGAGTCATTAGTAAGCCTCCCTTCGAAGCCACAGAAC
CTAGAAGATCTGCTAAAGTTCTACGTCATGGCTGTTATAAGGTCATGCGT
TCGAGAATCGTGGAGTGCGGAGAAGCTGAAGCATTGTTTCGACAAGGATC
CAACCTCTTCAAGAGGAAAAGCGTTTCTGGCAATCAGCTCTAGTTTGTTG
CTGATGGAACGTGCGAGACATATGGGGCAATGTCATGTGAAATGGAGACC
TGAGCTTATTCAAGAACTTGTGCAACGGCGAATCATAGAATGGTCGAAAG
TCCCAAAGCATGTTTCGTTCGACCATTTCGCTGGGTGTGATGTTTGCCTC
GGTCAGCGTGAAGCCACCATCCGTCTGTGGCTCCGTGGAGATCGGTATGA
CTCAAGCGATTTCTGGCCTGGAAGTAGTCGGGTTGATGTGCTTTCCTCGG
AAGAAAGGTTAGATCAAGACATTATGTCAGTTGCCGTGGAACTAGTTGGC
AGCACGAAGAATGAACGTTTCATTGCAATTGGTGAAGCAAAAGACAGGGT
GGACGCCGAGTTTTGGGTAGACCCTCAGTGTCTGCGGAAATGTCTCTTGT
TCCATGAACTTGTGCACGCCACGGCCATTATTGCTCAAGATTTACGTATT
CTCATCGAGGATGAACTTCGAGACGGAGTGGTTCACTTAGATATGCGCAA
TCGTGTTCCGGGAGATGAGAAACTAGGGGTTCCTGAAAGGCTTGAGAGGT
ATTTGGTCCAGGCTGTTACGGAGAACAGGGATTTCTTGAAGAGAAGAACG
AAGCATTTGATGGAGATCATACGTCTGGGAGACATATACTTTTCCTCAGT
TGAAGAAGAATTAATTGACTCTGGAGCTCCGGAAGGCAGGAGGGCTCGCA
AAACTCCGCAGATGTACGATCCTCCCATAGATCTCAACGATGAAAAGTAC
AAGGATCGGATTGAGAGGATCGTCTCGCTAACGCAGCAACGGGAGATAAA
CGCCTCATTTGCTACCTTTGGGTAG

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+

>Gcaud2575.t1 ID=Gcaud2575.t1|Name=Gcaud2575.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1869bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:6077..8101+ (Gracilaria caudata M_176_S67 male)
ATGGTGGAAAAGGGGAAGCGGAAGGATGCAGTCCAACCTGCAAGCTCCAC
GCAAGCGGCAAAACGTCATAAACTTGCAGTGAAGCGCCCCTCCGCGGCAC
CAGCTCTTCAGAACACGAAGAAATCAAAAACAGCTTGTTCGGCATTACCA
CTTGTGAAGGACGTCGATAATGTCAAGTCGGAAGGGACGACTGGTGAAGT
GTCCCTTTCTGCTAGGGATGAACCCCTTCCTGCGGGTGAACAGCTCCCTT
CAGAAGCAAAGACTCAAGGATCACACTCGAAGGAGCGCCCCAAGAACAAG
TCTGCGGGTGAAAAGCAAAGTGAGCAAAGGAAAGAGGTAGTTGCTCAACA
AGGCGACGGTAGCAGAATTCGCTCAAAACGACGTAAGGTTGAGTCGGAGA
TAAAAAACACACAGCGCGAAAAAGAGCACAGGGCATCAAAATCGCCTAAA
AAAGCTTCGAACGGCAACGTCGTCACAACACTCAAAAGAGACAAGCCGGA
ACCACCCCCTCAAACACCGTCTCAAACGTCGCCGCACGCAAGCAAATCAA
AAAAGGGATTGGCGAAGAGGGCTACTCCCAAGTCACCTGCCGCCAAGTCA
TCCCGCCCTAAGAAAGAAACACCGAAGGAAACTAGAGAATTCGTCGAGGA
GTGTATTGTCGACGAAGGAACCGCCGCGATGCCTAACCCCGAACCGCGAG
CTTCCTCCGGGAAGAAAAGGAAAAGGGCCCAGCGCCCAACTAAAGGTTAC
CACACTGAAGTAGTTCTGGACTCTTCCGAGCATGATGTCAACCCTGATCA
AAAGTCCATGGATCTCATACTTAACGCAAGGTCCCGTCTCCCGTGGTGGC
GCGCCACAGAGTCATTAGTAAGCCTCCCTTCGAAGCCACAGAACCTAGAA
GATCTGCTAAAGTTCTACGTCATGGCTGTTATAAGGTCATGCGTTCGAGA
ATCGTGGAGTGCGGAGAAGCTGAAGCATTGTTTCGACAAGGATCCAACCT
CTTCAAGAGGAAAAGCGTTTCTGGCAATCAGCTCTAGTTTGTTGCTGATG
GAACGTGCGAGACATATGGGGCAATGTCATGTGAAATGGAGACCTGAGCT
TATTCAAGAACTTGTGCAACGGCGAATCATAGAATGGTCGAAAGTCCCAA
AGCATGTTTCGTTCGACCATTTCGCTGGGTGTGATGTTTGCCTCGGTCAG
CGTGAAGCCACCATCCGTCTGTGGCTCCGTGGAGATCGGTATGACTCAAG
CGATTTCTGGCCTGGAAGTAGTCGGGTTGATGTGCTTTCCTCGGAAGAAA
GGTTAGATCAAGACATTATGTCAGTTGCCGTGGAACTAGTTGGCAGCACG
AAGAATGAACGTTTCATTGCAATTGGTGAAGCAAAAGACAGGGTGGACGC
CGAGTTTTGGGTAGACCCTCAGTGTCTGCGGAAATGTCTCTTGTTCCATG
AACTTGTGCACGCCACGGCCATTATTGCTCAAGATTTACGTATTCTCATC
GAGGATGAACTTCGAGACGGAGTGGTTCACTTAGATATGCGCAATCGTGT
TCCGGGAGATGAGAAACTAGGGGTTCCTGAAAGGCTTGAGAGGTATTTGG
TCCAGGCTGTTACGGAGAACAGGGATTTCTTGAAGAGAAGAACGAAGCAT
TTGATGGAGATCATACGTCTGGGAGACATATACTTTTCCTCAGTTGAAGA
AGAATTAATTGACTCTGGAGCTCCGGAAGGCAGGAGGGCTCGCAAAACTC
CGCAGATGTACGATCCTCCCATAGATCTCAACGATGAAAAGTACAAGGAT
CGGATTGAGAGGATCGTCTCGCTAACGCAGCAACGGGAGATAAACGCCTC
ATTTGCTACCTTTGGGTAG