Gcaud2576.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2576.t2
Unique Name	Gcaud2576.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	651

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_427_length_25918_cov_4.599721	contig	NODE_427_length_25918_cov_4.599721:8216..10168 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704686.1
PFAMs	NUC173
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14794
Evalue	2.77e-40
EggNOG OGs	KOG1248@1\|root,KOG1248@2759\|Eukaryota
Description	maturation of SSU-rRNA
COG category	Z
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2576	Gcaud2576	Gracilaria caudata M_176_S67 male	gene	NODE_427_length_25918_cov_4.599721 8216..12400 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2576.t2.stop1	Gcaud2576.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_427_length_25918_cov_4.599721 8216..8218 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2576.t2.CDS1	Gcaud2576.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_427_length_25918_cov_4.599721 8216..10168 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2576.t2.exon1	Gcaud2576.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_427_length_25918_cov_4.599721 8216..10168 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2576.t2.start1	Gcaud2576.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_427_length_25918_cov_4.599721 10166..10168 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2576.t2	Gcaud2576.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_427_length_25918_cov_4.599721 8216..10168 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_427_length_25918_cov_4.599721:8216..10168-
coding sequence from alignment at NODE_427_length_25918_cov_4.599721:8216..10168-

mRNA sequence

>Gcaud2576.t2 ID=Gcaud2576.t2|Name=Gcaud2576.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=651bp
MEAVTAACRATRTPAVVLALLRKSVRRLLELRVNMSNEAKEFSKSSEDNA
QVVRRQHAAADLSIAIAESKIMPFDASEVGVLEKALTPFFANPKETALQK
KAYRASTLLLSMRGNDPTLPEFASFLDTLSKSGKTVASGAKAARQVLIAT
LVNSSLRINSGQPRVAYLEKLNDMFLSEVIMGTRDVSEKARAASFETLVS
MARTWNASNSGVDYSGLKKFFFAVTAGLGARTVPMIASTVTALGRLIYDF
RGEARLNEEFRQIVDSMFANMSGSLDTTMADERGEKEESGSNDVEPGPIG
ILLRHNDVEVQKAALGVVKVATKVLAEPSTRLSAVLPGIVPGLVCVAARS
KKQEVRLRVRVVFERILRKCGYDALQAVFPPEHMKLLSAVRKKYSRDMLK
KHAAKDKRQQQAALKSQRLEPREGDGDKGIEVPMEDSDSDVEREILDGDE
LLEAGMRQVKHSKNKESSDVMDLLDGQARGLGEDGEGNISEALRLRKQNS
KTSEIVKYSKDGRLILVESDDDSGLAEIGSASDTSDDEDTKRPLKRSLNT
AIDRKRGRAQVDDEGRRTKRLKGSFGEEYKSRRGAGDVKRAGRPDPYAYV
PLGMEMIGPGARPGLIGAKRNRKASSLSKLVRGSRGKKLRGKPMGVPGKR
*

spliced messenger RNA

>Gcaud2576.t2 ID=Gcaud2576.t2|Name=Gcaud2576.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:8216..10168- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCGTTACTGCAGCTTGTAGAGCGACACGGACCCCGGCTGTTGT
GCTTGCTCTGCTGAGAAAGTCGGTGCGCAGGCTTCTCGAACTTCGAGTGA
ATATGTCGAACGAAGCTAAGGAATTTTCAAAATCGTCGGAGGACAATGCA
CAAGTGGTAAGACGACAACATGCTGCAGCTGATCTTTCGATTGCAATTGC
GGAGAGCAAGATTATGCCCTTTGATGCTTCTGAAGTTGGTGTCCTAGAGA
AAGCTTTGACACCATTCTTTGCAAATCCAAAGGAGACTGCCCTGCAGAAG
AAGGCTTACAGAGCATCGACTTTGCTTCTTTCAATGCGAGGGAACGATCC
AACTTTGCCAGAGTTTGCCTCTTTCCTAGATACTCTATCAAAGTCTGGAA
AGACTGTGGCTTCAGGCGCGAAAGCTGCGCGTCAGGTTCTGATTGCTACC
CTTGTTAACAGCAGTTTGCGGATAAATTCGGGGCAGCCTCGCGTTGCTTA
CTTGGAAAAACTCAATGACATGTTTTTGTCTGAAGTCATAATGGGAACAA
GGGATGTATCTGAAAAGGCAAGAGCTGCTTCGTTTGAGACGCTAGTTAGC
ATGGCTCGGACTTGGAATGCTTCGAACTCTGGAGTCGATTACAGCGGCTT
GAAGAAATTCTTCTTTGCTGTGACGGCTGGACTTGGTGCAAGAACTGTGC
CTATGATCGCCTCTACAGTAACTGCTCTTGGTCGGCTTATTTATGACTTC
CGGGGGGAAGCCAGGTTGAACGAAGAGTTTAGACAAATCGTTGACTCCAT
GTTTGCTAATATGTCAGGGAGCTTAGACACGACCATGGCTGATGAAAGGG
GAGAAAAAGAGGAATCGGGTTCAAATGATGTTGAACCAGGGCCCATTGGG
ATCTTGCTGCGTCATAACGATGTTGAAGTGCAAAAAGCTGCACTTGGAGT
AGTGAAAGTTGCTACGAAAGTCCTTGCTGAGCCCTCCACTCGATTAAGCG
CAGTGCTTCCGGGTATTGTCCCTGGTCTTGTGTGTGTTGCAGCTAGATCT
AAGAAACAGGAAGTGCGACTTAGAGTCAGAGTTGTTTTTGAGCGTATCTT
GCGAAAATGCGGTTATGATGCACTTCAGGCTGTGTTTCCACCCGAACACA
TGAAGTTGTTGTCTGCAGTGAGAAAGAAGTACAGTCGTGACATGCTCAAG
AAGCACGCAGCAAAAGATAAACGACAACAACAAGCAGCCCTCAAATCCCA
GAGGCTTGAACCAAGGGAGGGGGACGGTGACAAGGGAATCGAAGTTCCTA
TGGAAGATTCAGATTCAGACGTCGAGCGGGAGATCCTTGACGGTGATGAA
CTGCTTGAAGCAGGGATGCGGCAGGTAAAACATTCAAAGAATAAGGAATC
GTCAGACGTGATGGACTTGTTGGACGGTCAAGCTCGCGGTCTCGGTGAGG
ACGGAGAAGGTAATATAAGCGAAGCGTTGCGCCTTAGGAAGCAGAACAGC
AAAACAAGTGAAATAGTTAAGTACTCAAAAGATGGTCGCCTTATACTTGT
CGAAAGTGACGACGACAGTGGTCTTGCAGAGATTGGAAGTGCAAGTGATA
CATCAGATGATGAAGATACGAAGCGTCCTCTGAAAAGATCTCTGAACACT
GCAATTGATAGAAAACGAGGAAGAGCGCAAGTTGATGACGAAGGTCGTCG
CACAAAGAGACTGAAAGGCTCATTTGGCGAGGAATACAAGAGTCGTAGAG
GCGCTGGTGACGTGAAGCGTGCAGGTCGGCCTGATCCGTATGCTTATGTG
CCGCTTGGGATGGAGATGATTGGACCTGGAGCTCGCCCTGGATTGATCGG
TGCAAAGCGAAACCGCAAGGCTTCGAGTCTATCGAAGTTGGTTCGTGGTA
GTCGCGGGAAGAAATTGAGAGGCAAGCCAATGGGCGTCCCAGGAAAACGA
TAG

protein sequence of Gcaud2576.t2

>Gcaud2576.t2 ID=Gcaud2576.t2|Name=Gcaud2576.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=651bp
MEAVTAACRATRTPAVVLALLRKSVRRLLELRVNMSNEAKEFSKSSEDNA
QVVRRQHAAADLSIAIAESKIMPFDASEVGVLEKALTPFFANPKETALQK
KAYRASTLLLSMRGNDPTLPEFASFLDTLSKSGKTVASGAKAARQVLIAT
LVNSSLRINSGQPRVAYLEKLNDMFLSEVIMGTRDVSEKARAASFETLVS
MARTWNASNSGVDYSGLKKFFFAVTAGLGARTVPMIASTVTALGRLIYDF
RGEARLNEEFRQIVDSMFANMSGSLDTTMADERGEKEESGSNDVEPGPIG
ILLRHNDVEVQKAALGVVKVATKVLAEPSTRLSAVLPGIVPGLVCVAARS
KKQEVRLRVRVVFERILRKCGYDALQAVFPPEHMKLLSAVRKKYSRDMLK
KHAAKDKRQQQAALKSQRLEPREGDGDKGIEVPMEDSDSDVEREILDGDE
LLEAGMRQVKHSKNKESSDVMDLLDGQARGLGEDGEGNISEALRLRKQNS
KTSEIVKYSKDGRLILVESDDDSGLAEIGSASDTSDDEDTKRPLKRSLNT
AIDRKRGRAQVDDEGRRTKRLKGSFGEEYKSRRGAGDVKRAGRPDPYAYV
PLGMEMIGPGARPGLIGAKRNRKASSLSKLVRGSRGKKLRGKPMGVPGKR
*

mRNA from alignment at NODE_427_length_25918_cov_4.599721:8216..10168-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2576.t2 ID=Gcaud2576.t2|Name=Gcaud2576.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:8216..10168- (Gracilaria caudata M_176_S67 male)
ATGGAAGCCGTTACTGCAGCTTGTAGAGCGACACGGACCCCGGCTGTTGT
GCTTGCTCTGCTGAGAAAGTCGGTGCGCAGGCTTCTCGAACTTCGAGTGA
ATATGTCGAACGAAGCTAAGGAATTTTCAAAATCGTCGGAGGACAATGCA
CAAGTGGTAAGACGACAACATGCTGCAGCTGATCTTTCGATTGCAATTGC
GGAGAGCAAGATTATGCCCTTTGATGCTTCTGAAGTTGGTGTCCTAGAGA
AAGCTTTGACACCATTCTTTGCAAATCCAAAGGAGACTGCCCTGCAGAAG
AAGGCTTACAGAGCATCGACTTTGCTTCTTTCAATGCGAGGGAACGATCC
AACTTTGCCAGAGTTTGCCTCTTTCCTAGATACTCTATCAAAGTCTGGAA
AGACTGTGGCTTCAGGCGCGAAAGCTGCGCGTCAGGTTCTGATTGCTACC
CTTGTTAACAGCAGTTTGCGGATAAATTCGGGGCAGCCTCGCGTTGCTTA
CTTGGAAAAACTCAATGACATGTTTTTGTCTGAAGTCATAATGGGAACAA
GGGATGTATCTGAAAAGGCAAGAGCTGCTTCGTTTGAGACGCTAGTTAGC
ATGGCTCGGACTTGGAATGCTTCGAACTCTGGAGTCGATTACAGCGGCTT
GAAGAAATTCTTCTTTGCTGTGACGGCTGGACTTGGTGCAAGAACTGTGC
CTATGATCGCCTCTACAGTAACTGCTCTTGGTCGGCTTATTTATGACTTC
CGGGGGGAAGCCAGGTTGAACGAAGAGTTTAGACAAATCGTTGACTCCAT
GTTTGCTAATATGTCAGGGAGCTTAGACACGACCATGGCTGATGAAAGGG
GAGAAAAAGAGGAATCGGGTTCAAATGATGTTGAACCAGGGCCCATTGGG
ATCTTGCTGCGTCATAACGATGTTGAAGTGCAAAAAGCTGCACTTGGAGT
AGTGAAAGTTGCTACGAAAGTCCTTGCTGAGCCCTCCACTCGATTAAGCG
CAGTGCTTCCGGGTATTGTCCCTGGTCTTGTGTGTGTTGCAGCTAGATCT
AAGAAACAGGAAGTGCGACTTAGAGTCAGAGTTGTTTTTGAGCGTATCTT
GCGAAAATGCGGTTATGATGCACTTCAGGCTGTGTTTCCACCCGAACACA
TGAAGTTGTTGTCTGCAGTGAGAAAGAAGTACAGTCGTGACATGCTCAAG
AAGCACGCAGCAAAAGATAAACGACAACAACAAGCAGCCCTCAAATCCCA
GAGGCTTGAACCAAGGGAGGGGGACGGTGACAAGGGAATCGAAGTTCCTA
TGGAAGATTCAGATTCAGACGTCGAGCGGGAGATCCTTGACGGTGATGAA
CTGCTTGAAGCAGGGATGCGGCAGGTAAAACATTCAAAGAATAAGGAATC
GTCAGACGTGATGGACTTGTTGGACGGTCAAGCTCGCGGTCTCGGTGAGG
ACGGAGAAGGTAATATAAGCGAAGCGTTGCGCCTTAGGAAGCAGAACAGC
AAAACAAGTGAAATAGTTAAGTACTCAAAAGATGGTCGCCTTATACTTGT
CGAAAGTGACGACGACAGTGGTCTTGCAGAGATTGGAAGTGCAAGTGATA
CATCAGATGATGAAGATACGAAGCGTCCTCTGAAAAGATCTCTGAACACT
GCAATTGATAGAAAACGAGGAAGAGCGCAAGTTGATGACGAAGGTCGTCG
CACAAAGAGACTGAAAGGCTCATTTGGCGAGGAATACAAGAGTCGTAGAG
GCGCTGGTGACGTGAAGCGTGCAGGTCGGCCTGATCCGTATGCTTATGTG
CCGCTTGGGATGGAGATGATTGGACCTGGAGCTCGCCCTGGATTGATCGG
TGCAAAGCGAAACCGCAAGGCTTCGAGTCTATCGAAGTTGGTTCGTGGTA
GTCGCGGGAAGAAATTGAGAGGCAAGCCAATGGGCGTCCCAGGAAAACGA
TAG

Coding sequence (CDS) from alignment at NODE_427_length_25918_cov_4.599721:8216..10168-

>Gcaud2576.t2 ID=Gcaud2576.t2|Name=Gcaud2576.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1953bp|location=Sequence derived from alignment at NODE_427_length_25918_cov_4.599721:8216..10168- (Gracilaria caudata M_176_S67 male)
ATGGAAGCCGTTACTGCAGCTTGTAGAGCGACACGGACCCCGGCTGTTGT
GCTTGCTCTGCTGAGAAAGTCGGTGCGCAGGCTTCTCGAACTTCGAGTGA
ATATGTCGAACGAAGCTAAGGAATTTTCAAAATCGTCGGAGGACAATGCA
CAAGTGGTAAGACGACAACATGCTGCAGCTGATCTTTCGATTGCAATTGC
GGAGAGCAAGATTATGCCCTTTGATGCTTCTGAAGTTGGTGTCCTAGAGA
AAGCTTTGACACCATTCTTTGCAAATCCAAAGGAGACTGCCCTGCAGAAG
AAGGCTTACAGAGCATCGACTTTGCTTCTTTCAATGCGAGGGAACGATCC
AACTTTGCCAGAGTTTGCCTCTTTCCTAGATACTCTATCAAAGTCTGGAA
AGACTGTGGCTTCAGGCGCGAAAGCTGCGCGTCAGGTTCTGATTGCTACC
CTTGTTAACAGCAGTTTGCGGATAAATTCGGGGCAGCCTCGCGTTGCTTA
CTTGGAAAAACTCAATGACATGTTTTTGTCTGAAGTCATAATGGGAACAA
GGGATGTATCTGAAAAGGCAAGAGCTGCTTCGTTTGAGACGCTAGTTAGC
ATGGCTCGGACTTGGAATGCTTCGAACTCTGGAGTCGATTACAGCGGCTT
GAAGAAATTCTTCTTTGCTGTGACGGCTGGACTTGGTGCAAGAACTGTGC
CTATGATCGCCTCTACAGTAACTGCTCTTGGTCGGCTTATTTATGACTTC
CGGGGGGAAGCCAGGTTGAACGAAGAGTTTAGACAAATCGTTGACTCCAT
GTTTGCTAATATGTCAGGGAGCTTAGACACGACCATGGCTGATGAAAGGG
GAGAAAAAGAGGAATCGGGTTCAAATGATGTTGAACCAGGGCCCATTGGG
ATCTTGCTGCGTCATAACGATGTTGAAGTGCAAAAAGCTGCACTTGGAGT
AGTGAAAGTTGCTACGAAAGTCCTTGCTGAGCCCTCCACTCGATTAAGCG
CAGTGCTTCCGGGTATTGTCCCTGGTCTTGTGTGTGTTGCAGCTAGATCT
AAGAAACAGGAAGTGCGACTTAGAGTCAGAGTTGTTTTTGAGCGTATCTT
GCGAAAATGCGGTTATGATGCACTTCAGGCTGTGTTTCCACCCGAACACA
TGAAGTTGTTGTCTGCAGTGAGAAAGAAGTACAGTCGTGACATGCTCAAG
AAGCACGCAGCAAAAGATAAACGACAACAACAAGCAGCCCTCAAATCCCA
GAGGCTTGAACCAAGGGAGGGGGACGGTGACAAGGGAATCGAAGTTCCTA
TGGAAGATTCAGATTCAGACGTCGAGCGGGAGATCCTTGACGGTGATGAA
CTGCTTGAAGCAGGGATGCGGCAGGTAAAACATTCAAAGAATAAGGAATC
GTCAGACGTGATGGACTTGTTGGACGGTCAAGCTCGCGGTCTCGGTGAGG
ACGGAGAAGGTAATATAAGCGAAGCGTTGCGCCTTAGGAAGCAGAACAGC
AAAACAAGTGAAATAGTTAAGTACTCAAAAGATGGTCGCCTTATACTTGT
CGAAAGTGACGACGACAGTGGTCTTGCAGAGATTGGAAGTGCAAGTGATA
CATCAGATGATGAAGATACGAAGCGTCCTCTGAAAAGATCTCTGAACACT
GCAATTGATAGAAAACGAGGAAGAGCGCAAGTTGATGACGAAGGTCGTCG
CACAAAGAGACTGAAAGGCTCATTTGGCGAGGAATACAAGAGTCGTAGAG
GCGCTGGTGACGTGAAGCGTGCAGGTCGGCCTGATCCGTATGCTTATGTG
CCGCTTGGGATGGAGATGATTGGACCTGGAGCTCGCCCTGGATTGATCGG
TGCAAAGCGAAACCGCAAGGCTTCGAGTCTATCGAAGTTGGTTCGTGGTA
GTCGCGGGAAGAAATTGAGAGGCAAGCCAATGGGCGTCCCAGGAAAACGA
TAG