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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud256.t1.start1 | Gcaud256.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_426_length_25926_cov_5.837081 15730..15732 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud256.t1.stop1 | Gcaud256.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_426_length_25926_cov_5.837081 18998..19000 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp
MAELDANSEEEELDRSAHEDGNRIDYPSRFKPDYNPFRSLPQVATLMDCA
QVCTGWANAIIDKENWQSLCPRIEQKEHIFEAWFNLQPILQTRCLHLTIT
NQAIAPHTDVFDRKRVGFLTLMVSKWSLLQSLDIDCAANEIFIPDTILNY
RDNYIPKPDPPFPALKRLSLSTHVDMRAGRNVTLVAPHVEHFHMRLSGYG
DDHLLSIERARTRGVYRQFLREDKRYRSPDMVTLLHSLAIVLTMICVVQT
SVLPSDNKQLSNNVMYANDKHHALKSALSGTSLLIRKGNERLDVDKRATG
HDSTDYNSAQARPTLVRQQNNGTIYGFVYKGGGGCRHCDEDDDDGRR* back to topspliced messenger RNA >Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:15730..19000+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGAGCTTGACGCCAATTCCGAGGAAGAAGAACTTGATAGGTCTGC
CCACGAAGACGGAAATCGCATTGACTATCCCTCTCGTTTCAAACCGGACT
ACAACCCGTTTCGATCGCTCCCGCAAGTTGCGACGTTGATGGATTGCGCG
CAGGTGTGTACCGGGTGGGCTAACGCCATTATCGACAAGGAAAATTGGCA
ATCGCTCTGTCCAAGAATTGAGCAAAAGGAGCACATTTTCGAAGCTTGGT
TCAACTTGCAACCCATTTTGCAGACGAGGTGTTTGCATCTCACAATCACG
AACCAGGCTATCGCACCCCACACCGATGTATTCGACAGAAAACGCGTCGG
GTTTCTCACGTTAATGGTCTCCAAGTGGTCTTTGTTGCAGTCATTGGACA
TTGACTGCGCAGCGAATGAGATTTTTATTCCTGACACCATATTGAACTAC
AGGGATAACTACATCCCCAAACCGGATCCACCATTCCCGGCCCTGAAACG
ACTTTCGCTCAGCACTCATGTGGACATGCGAGCTGGGCGTAATGTTACGC
TGGTAGCTCCCCACGTTGAGCATTTTCATATGAGGCTTTCTGGATATGGG
GACGATCATTTGTTAAGTATAGAACGGGCTCGAACACGCGGTGTTTATCG
GCAGTTTCTTCGGGAGGACAAGCGCTATAGATCCCCCGATATGGTTACTC
TTCTACACTCTCTCGCCATTGTGCTCACCATGATCTGCGTCGTCCAGACC
TCCGTGCTGCCTTCCGACAATAAGCAGCTGTCAAACAACGTTATGTATGC
CAATGACAAGCATCATGCATTGAAATCTGCACTATCTGGAACTTCTCTTC
TGATTCGTAAAGGAAACGAGCGTTTGGACGTGGACAAACGTGCGACTGGC
CATGACTCTACGGATTACAACTCTGCCCAGGCGCGCCCGACTCTGGTACG
ACAGCAGAATAATGGGACCATTTACGGCTTTGTATACAAGGGCGGCGGAG
GTTGTCGTCACTGTGATGAAGATGACGATGATGGCCGTCGTTAG back to topprotein sequence of Gcaud256.t1 >Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MAELDANSEEEELDRSAHEDGNRIDYPSRFKPDYNPFRSLPQVATLMDCA
QVCTGWANAIIDKENWQSLCPRIEQKEHIFEAWFNLQPILQTRCLHLTIT
NQAIAPHTDVFDRKRVGFLTLMVSKWSLLQSLDIDCAANEIFIPDTILNY
RDNYIPKPDPPFPALKRLSLSTHVDMRAGRNVTLVAPHVEHFHMRLSGYG
DDHLLSIERARTRGVYRQFLREDKRYRSPDMVTLLHSLAIVLTMICVVQT
SVLPSDNKQLSNNVMYANDKHHALKSALSGTSLLIRKGNERLDVDKRATG
HDSTDYNSAQARPTLVRQQNNGTIYGFVYKGGGGCRHCDEDDDDGRR* back to topmRNA from alignment at NODE_426_length_25926_cov_5.837081:15730..19000+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3271bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:15730..19000+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAGCTTGACGCCAATTCCGAGGAAGAAGAACTTGATAGGTCTGC
CCACGAAGACGGAAATCGCATTGACTATCCCTCTCGTTTCAAACCGGACT
ACAACCCGTTTCGATCGCTCCCGCAAGTTGCGACGTTGATGGATTGCGCG
CAGGTGTGTACCGGGTGGGCTAACGCCATTATCGACAAGGAAAATTGGCA
ATCGCTCTGTCCAAGAATGTACAGTGAAgcgctggctgaaccgtggaagg
tcggaaagagatggaatcggttgttgaacgatgtgccggtacccatcctg
tgtgtgaatgaagaactgctttccaacattggaaagattcacacatccat
tctccgaggACGCGATGCATTTGAAGTGTACTTTCTATCTAATAGTGAGC
AAAAGGAGCACATTTTCGAAGCTTGGTTCAACTTGCAACCCATTTTGCAG
ACGAGGTGTTTGCATCTCACAATCACGAACCAGGCTATCGCACCCCACAC
CGATGTATTCGACAGAAAACGCGTCGGGTTTCTCACGTTAATGGTCTCCA
AGTGGTCTTTGTTGCAGTCATTGGACATTGACTGCGCAGCGAATGAGATT
TTTATTCCTGACACCATATTGAACTACAGGGATAACTACATCCCCAAACC
GGATCCACCATTCCCGGCCCTGAAACGACTTTCGCTCAGCACTCATGTGG
ACATGCGAGCTGGGCGTAATGTTACGCTGGTAGCTCCCCACGTTGAGCAT
TTTCATATGAGGCTTTCTGGATATGGGGACGATCATTTGTTAAGTATAGA
ACGGGCTCGAACACGCGGTGTTTATCGGCAGTTTCTTCGGGAGGACAAGC
GCTATAGATCGTATGTAACGCCGTTCTGCATTCATGCGTTTAAATGGCCT
GGGCCACAAACCATGCGCGAATACAAGCAAGGGTGGAGATTTCAGAGCAT
AATGACAAATTGTTTTTGGTCTGGCGTTCTGATTTCGGAAAGAAGGGATG
GAAAGACTTGTGAGCTATTTCTGCCTTTCGACCAGTTCTTTGAAGTTGAA
GATCTTAGAGTCATATCTATTCCCTTCATCGAGAACCCTTGAGAGCATCT
AAGAAAAAAACAGTGCCCGAAGTTGTTTCAACTTTCGCTCAAGAGATTCC
TGATCATCTTGTAAAAAGTTATGACCCGATTTGAAGTTCATTAAGGTTTT
AATTTTTGGCTAAAAGCGGGCATTTCGTCAGCGACATATCTTTGAGAGAG
ACGCGATGCGATAAAATTAAACAGATTTGGTACAATCGCGGAAATGTGTT
CATTTCGAAGGGCGAAGAGGATATCGGCAAAACCAAACCCAGAGAAAAAG
AAAAGCACAGTTTTCAATCTCAGAGCTCTTCACTTTTTCCGTATTTCCTT
GGGGCTTGCTTGCAAAACTCATTGATGTTTCCACATGCAACACACTTGGG
ACTCGATAAGGCAGCCCCATATAGATAGAGCGGGGTGTTGCTTTCTGCAA
AGTGTATGATAGATGGAGCTAACACTGGAGGATAAAATTAAAAAATGAAT
GTCTATTTGATGCTATGATTGTAATTTAAGATATATGCACGACCGTGATG
CACAGTCAAGGCTTTGGTGCAGCGTTATTGGACCAACGGTTCAGGATGAG
TACCGCTGATAGATTTCCGAAATTGAGCAGTGCCAGACATCATGCCACTG
AATTCGATGCCTCCAGAGTACTGGCATCATGATTGGCTTGTCCTTCGAGT
TGCCACCGCCAGACGTGCACGTAGAAATACTGCGCAGCCCAAAAGGCTGC
GTGTGTTTCTCGCCGGCCCAGATGTCGCAGAGCATGTTTGTCGAGCAACC
TTATGCAGCAGATTTGTAATCGAGGGCGAGCATCACCGCCCAAGGCAGGG
AAGCGCTGAGGAACTACGGAGGCGGCAATTCTGCCCATGCGTGTATGCGT
CGCGTACTGTGCACACGTGTATTGCGTGCACACAACGACAGGTTTGCTTG
CATTGCTGTACTTCCTATTTCTGCATACGCGTATAGATAAGTATCTGCTA
AGGCGACAGAGAAGGTTTTGTTTGGCGAGACATGTTTTTATGCCATTTGC
ACTTAAACTACTAAATCTCCCCGACACGCATTCGCAAAAACGTCAAGTGT
ATAACCGTCTACTTGTCCTTCCTATGACCAAAGGGTTGACTGCATTTCTG
CCGTAGAATAGCATGTTGTGCTATCTTAGTCATCAGCACAACCTTCTCGA
TTCCTTTTCCCACAGGAAACAAGTACGCTTGTATTAGCTGTAGAGCTACA
GGTACGACGGTAATACAGGGCTACTTGTTTCTTTTTCAAAGTGATTTGAC
AAGTTGTAGCGTCGCGTTTTTGTCTGACGATTTGTTTTTAAAGAGGTTTT
GCTCGTTCTCTGTATGCACCCGCTGAAACGTGACGTTGTCAGCGGGTTCC
GAGCGCCCTTCTTTGAAGCCATGGACGGTCAGACGTGCTCTGACGAGGAG
GCGTACCGTACAGTACATTATAAACGGAGCAACGCACTGGAAGAAGCTCA
GTCGTTTTATCAGAAAGCTAACTTGTGCCCTTTCGATTACAGTATAACAG
CGTGTGATTGGGCAGTTGGCGGAAAGATTTCTGGCACCAAGTGGTTCGTG
CGGTGCGTGCCACAATCTCCTTTTCAGCCGGAGATGAGCATACACTGTCA
AACGATACTTCAGCTATAATCGCCCAATTGTGCTCGTCTGTCGTTGCTTC
AACTCCAGCACTTCACAGCCACAACAGAACAAACCCTTCTACGCGAGGGC
CTTCGCATAAATGCAGAACGCACGCAATCCCGAAGCACGCCCACTCGCTC
TGCTCCACCACCATCAGTTCTCCCACACCTCGTTTCTGTGCTCTTTTGCA
CGTTGGACAGCCCCGATATGGTTACTCTTCTACACTCTCTCGCCATTGTG
CTCACCATGATCTGCGTCGTCCAGACCTCCGTGCTGCCTTCCGACAATAA
GCAGCTGTCAAACAACGTTATGTATGCCAATGACAAGCATCATGCATTGA
AATCTGCACTATCTGGAACTTCTCTTCTGATTCGTAAAGGAAACGAGCGT
TTGGACGTGGACAAACGTGCGACTGGCCATGACTCTACGGATTACAACTC
TGCCCAGGCGCGCCCGACTCTGGTACGACAGCAGAATAATGGGACCATTT
ACGGCTTTGTATACAAGGGCGGCGGAGGTTGTCGTCACTGTGATGAAGAT
GACGATGATGGCCGTCGTTAG back to topCoding sequence (CDS) from alignment at NODE_426_length_25926_cov_5.837081:15730..19000+ >Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1044bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:15730..19000+ (Gracilaria caudata M_176_S67 male)
ATGGCTGAGCTTGACGCCAATTCCGAGGAAGAAGAACTTGATAGGTCTGC
CCACGAAGACGGAAATCGCATTGACTATCCCTCTCGTTTCAAACCGGACT
ACAACCCGTTTCGATCGCTCCCGCAAGTTGCGACGTTGATGGATTGCGCG
CAGGTGTGTACCGGGTGGGCTAACGCCATTATCGACAAGGAAAATTGGCA
ATCGCTCTGTCCAAGAATTGAGCAAAAGGAGCACATTTTCGAAGCTTGGT
TCAACTTGCAACCCATTTTGCAGACGAGGTGTTTGCATCTCACAATCACG
AACCAGGCTATCGCACCCCACACCGATGTATTCGACAGAAAACGCGTCGG
GTTTCTCACGTTAATGGTCTCCAAGTGGTCTTTGTTGCAGTCATTGGACA
TTGACTGCGCAGCGAATGAGATTTTTATTCCTGACACCATATTGAACTAC
AGGGATAACTACATCCCCAAACCGGATCCACCATTCCCGGCCCTGAAACG
ACTTTCGCTCAGCACTCATGTGGACATGCGAGCTGGGCGTAATGTTACGC
TGGTAGCTCCCCACGTTGAGCATTTTCATATGAGGCTTTCTGGATATGGG
GACGATCATTTGTTAAGTATAGAACGGGCTCGAACACGCGGTGTTTATCG
GCAGTTTCTTCGGGAGGACAAGCGCTATAGATCCCCCGATATGGTTACTC
TTCTACACTCTCTCGCCATTGTGCTCACCATGATCTGCGTCGTCCAGACC
TCCGTGCTGCCTTCCGACAATAAGCAGCTGTCAAACAACGTTATGTATGC
CAATGACAAGCATCATGCATTGAAATCTGCACTATCTGGAACTTCTCTTC
TGATTCGTAAAGGAAACGAGCGTTTGGACGTGGACAAACGTGCGACTGGC
CATGACTCTACGGATTACAACTCTGCCCAGGCGCGCCCGACTCTGGTACG
ACAGCAGAATAATGGGACCATTTACGGCTTTGTATACAAGGGCGGCGGAG
GTTGTCGTCACTGTGATGAAGATGACGATGATGGCCGTCGTTAG back to top
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