Gcaud2112.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2112.t1
Unique Name	Gcaud2112.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1126_length_13510_cov_4.780237	contig	NODE_1126_length_13510_cov_4.780237:1795..2988 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003286844.1
Max annot lvl	554915\|Amoebozoa
Evalue	2.89e-25
EggNOG OGs	28NG8@1\|root,2S6X1@2759\|Eukaryota,3XFB3@554915\|Amoebozoa

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2112	Gcaud2112	Gracilaria caudata M_176_S67 male	gene	NODE_1126_length_13510_cov_4.780237 1795..2988 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2112.t1.start1	Gcaud2112.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1126_length_13510_cov_4.780237 1795..1797 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2112.t1.CDS1	Gcaud2112.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1126_length_13510_cov_4.780237 1795..2988 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2112.t1.exon1	Gcaud2112.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1126_length_13510_cov_4.780237 1795..2988 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2112.t1.stop1	Gcaud2112.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1126_length_13510_cov_4.780237 2986..2988 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2112.t1	Gcaud2112.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1126_length_13510_cov_4.780237 1795..2988 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+
coding sequence from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+

mRNA sequence

>Gcaud2112.t1 ID=Gcaud2112.t1|Name=Gcaud2112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MASSETVEKGPTEGKTVASDKLSIRESIYSRLEEVKKLYDADKLLQVSRI
LSAIHTDIETLESSSSPSSLQLKEEIQKTLSHPPYVRIASECSQLLTLWQ
GLSSEHRDGWTISYDGEQTKVWYRKEPHTSSHSILIEGEIHAPLLHVAAL
VYEADLYERLFWYVTSARRLEIENPTPLRRAAYITVFAPWPLYKRDVAVY
AYAVDALDEDDCVVVVTKSIDESHPVKEKVPEASILSRTVRADMHNSGFV
LFPQSPGVTKARFLYNVNPHLTFVPMALVNWGARTICRWSLRTLETRAQN
LDKLSPLYKERIQSHPFYEFVRGRLGEFWERKGMSADDHVDQSGAASLEQ
RRSHSFDPEIQPQLPPTSVIKAIVTGDRGHDSKKTNRVKTVFGGRQS*

spliced messenger RNA

>Gcaud2112.t1 ID=Gcaud2112.t1|Name=Gcaud2112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTTCAGAAACCGTTGAGAAAGGACCGACGGAAGGGAAAACTGT
CGCTTCCGACAAGCTTTCCATTCGAGAGAGCATCTACAGTCGTCTTGAAG
AGGTAAAGAAGCTTTACGACGCCGACAAGCTGCTGCAAGTCTCTCGCATT
TTATCAGCTATACACACAGATATTGAAACTTTAGAATCTTCCTCATCACC
GAGCTCACTACAACTTAAAGAAGAAATACAGAAAACTTTATCTCATCCAC
CGTACGTTCGCATAGCATCCGAGTGTTCACAACTCCTAACTCTGTGGCAA
GGGCTAAGCTCAGAACATCGTGATGGATGGACAATTTCGTACGACGGAGA
GCAGACAAAGGTGTGGTACCGGAAGGAGCCACACACCAGTTCGCACTCCA
TTCTTATCGAGGGGGAAATTCACGCTCCTCTTCTCCACGTTGCTGCCTTG
GTTTATGAGGCTGATCTTTACGAGCGCCTGTTCTGGTATGTCACTTCAGC
AAGAAGGCTTGAGATTGAGAACCCGACCCCATTGCGCCGAGCAGCGTATA
TAACGGTTTTTGCTCCGTGGCCTCTGTATAAACGCGATGTAGCCGTATAC
GCATACGCCGTTGATGCATTGGATGAGGACGACTGCGTCGTGGTAGTTAC
CAAGTCAATCGACGAGTCTCATCCCGTGAAAGAAAAAGTTCCGGAAGCGA
GTATTCTTTCGAGAACTGTGAGAGCCGACATGCACAATTCTGGGTTTGTA
CTCTTCCCTCAAAGCCCTGGGGTGACAAAAGCTCGGTTTTTGTATAACGT
GAATCCACATCTGACTTTCGTTCCTATGGCTCTGGTCAACTGGGGTGCTA
GAACGATTTGTAGATGGTCGCTAAGAACGCTTGAAACTCGAGCTCAAAAC
TTGGACAAACTCTCTCCTCTGTACAAGGAAAGGATACAGTCGCATCCGTT
CTATGAATTCGTTAGAGGTCGCCTTGGTGAGTTTTGGGAACGAAAGGGTA
TGTCCGCGGACGACCACGTTGATCAGTCTGGTGCGGCATCGTTAGAACAA
CGTCGCTCCCACAGTTTTGACCCGGAGATACAACCACAACTTCCTCCCAC
GTCTGTAATTAAAGCCATCGTGACTGGAGATCGTGGTCACGATTCGAAGA
AAACGAATCGCGTTAAAACCGTCTTCGGTGGCAGACAATCTTAG

protein sequence of Gcaud2112.t1

>Gcaud2112.t1 ID=Gcaud2112.t1|Name=Gcaud2112.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MASSETVEKGPTEGKTVASDKLSIRESIYSRLEEVKKLYDADKLLQVSRI
LSAIHTDIETLESSSSPSSLQLKEEIQKTLSHPPYVRIASECSQLLTLWQ
GLSSEHRDGWTISYDGEQTKVWYRKEPHTSSHSILIEGEIHAPLLHVAAL
VYEADLYERLFWYVTSARRLEIENPTPLRRAAYITVFAPWPLYKRDVAVY
AYAVDALDEDDCVVVVTKSIDESHPVKEKVPEASILSRTVRADMHNSGFV
LFPQSPGVTKARFLYNVNPHLTFVPMALVNWGARTICRWSLRTLETRAQN
LDKLSPLYKERIQSHPFYEFVRGRLGEFWERKGMSADDHVDQSGAASLEQ
RRSHSFDPEIQPQLPPTSVIKAIVTGDRGHDSKKTNRVKTVFGGRQS*

mRNA from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2112.t1 ID=Gcaud2112.t1|Name=Gcaud2112.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTTCAGAAACCGTTGAGAAAGGACCGACGGAAGGGAAAACTGT
CGCTTCCGACAAGCTTTCCATTCGAGAGAGCATCTACAGTCGTCTTGAAG
AGGTAAAGAAGCTTTACGACGCCGACAAGCTGCTGCAAGTCTCTCGCATT
TTATCAGCTATACACACAGATATTGAAACTTTAGAATCTTCCTCATCACC
GAGCTCACTACAACTTAAAGAAGAAATACAGAAAACTTTATCTCATCCAC
CGTACGTTCGCATAGCATCCGAGTGTTCACAACTCCTAACTCTGTGGCAA
GGGCTAAGCTCAGAACATCGTGATGGATGGACAATTTCGTACGACGGAGA
GCAGACAAAGGTGTGGTACCGGAAGGAGCCACACACCAGTTCGCACTCCA
TTCTTATCGAGGGGGAAATTCACGCTCCTCTTCTCCACGTTGCTGCCTTG
GTTTATGAGGCTGATCTTTACGAGCGCCTGTTCTGGTATGTCACTTCAGC
AAGAAGGCTTGAGATTGAGAACCCGACCCCATTGCGCCGAGCAGCGTATA
TAACGGTTTTTGCTCCGTGGCCTCTGTATAAACGCGATGTAGCCGTATAC
GCATACGCCGTTGATGCATTGGATGAGGACGACTGCGTCGTGGTAGTTAC
CAAGTCAATCGACGAGTCTCATCCCGTGAAAGAAAAAGTTCCGGAAGCGA
GTATTCTTTCGAGAACTGTGAGAGCCGACATGCACAATTCTGGGTTTGTA
CTCTTCCCTCAAAGCCCTGGGGTGACAAAAGCTCGGTTTTTGTATAACGT
GAATCCACATCTGACTTTCGTTCCTATGGCTCTGGTCAACTGGGGTGCTA
GAACGATTTGTAGATGGTCGCTAAGAACGCTTGAAACTCGAGCTCAAAAC
TTGGACAAACTCTCTCCTCTGTACAAGGAAAGGATACAGTCGCATCCGTT
CTATGAATTCGTTAGAGGTCGCCTTGGTGAGTTTTGGGAACGAAAGGGTA
TGTCCGCGGACGACCACGTTGATCAGTCTGGTGCGGCATCGTTAGAACAA
CGTCGCTCCCACAGTTTTGACCCGGAGATACAACCACAACTTCCTCCCAC
GTCTGTAATTAAAGCCATCGTGACTGGAGATCGTGGTCACGATTCGAAGA
AAACGAATCGCGTTAAAACCGTCTTCGGTGGCAGACAATCTTAG

Coding sequence (CDS) from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+

>Gcaud2112.t1 ID=Gcaud2112.t1|Name=Gcaud2112.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_1126_length_13510_cov_4.780237:1795..2988+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTTCAGAAACCGTTGAGAAAGGACCGACGGAAGGGAAAACTGT
CGCTTCCGACAAGCTTTCCATTCGAGAGAGCATCTACAGTCGTCTTGAAG
AGGTAAAGAAGCTTTACGACGCCGACAAGCTGCTGCAAGTCTCTCGCATT
TTATCAGCTATACACACAGATATTGAAACTTTAGAATCTTCCTCATCACC
GAGCTCACTACAACTTAAAGAAGAAATACAGAAAACTTTATCTCATCCAC
CGTACGTTCGCATAGCATCCGAGTGTTCACAACTCCTAACTCTGTGGCAA
GGGCTAAGCTCAGAACATCGTGATGGATGGACAATTTCGTACGACGGAGA
GCAGACAAAGGTGTGGTACCGGAAGGAGCCACACACCAGTTCGCACTCCA
TTCTTATCGAGGGGGAAATTCACGCTCCTCTTCTCCACGTTGCTGCCTTG
GTTTATGAGGCTGATCTTTACGAGCGCCTGTTCTGGTATGTCACTTCAGC
AAGAAGGCTTGAGATTGAGAACCCGACCCCATTGCGCCGAGCAGCGTATA
TAACGGTTTTTGCTCCGTGGCCTCTGTATAAACGCGATGTAGCCGTATAC
GCATACGCCGTTGATGCATTGGATGAGGACGACTGCGTCGTGGTAGTTAC
CAAGTCAATCGACGAGTCTCATCCCGTGAAAGAAAAAGTTCCGGAAGCGA
GTATTCTTTCGAGAACTGTGAGAGCCGACATGCACAATTCTGGGTTTGTA
CTCTTCCCTCAAAGCCCTGGGGTGACAAAAGCTCGGTTTTTGTATAACGT
GAATCCACATCTGACTTTCGTTCCTATGGCTCTGGTCAACTGGGGTGCTA
GAACGATTTGTAGATGGTCGCTAAGAACGCTTGAAACTCGAGCTCAAAAC
TTGGACAAACTCTCTCCTCTGTACAAGGAAAGGATACAGTCGCATCCGTT
CTATGAATTCGTTAGAGGTCGCCTTGGTGAGTTTTGGGAACGAAAGGGTA
TGTCCGCGGACGACCACGTTGATCAGTCTGGTGCGGCATCGTTAGAACAA
CGTCGCTCCCACAGTTTTGACCCGGAGATACAACCACAACTTCCTCCCAC
GTCTGTAATTAAAGCCATCGTGACTGGAGATCGTGGTCACGATTCGAAGA
AAACGAATCGCGTTAAAACCGTCTTCGGTGGCAGACAATCTTAG