Gcaud202.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud202.t1
Unique NameGcaud202.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4256_length_2422_cov_7.728443contigNODE_4256_length_2422_cov_7.728443:1810..2289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud202Gcaud202Gracilaria caudata M_176_S67 malegeneNODE_4256_length_2422_cov_7.728443 1810..2289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud202.t1.start1Gcaud202.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4256_length_2422_cov_7.728443 1810..1812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud202.t1.CDS1Gcaud202.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4256_length_2422_cov_7.728443 1810..2289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud202.t1.exon1Gcaud202.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4256_length_2422_cov_7.728443 1810..2289 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud202.t1.stop1Gcaud202.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4256_length_2422_cov_7.728443 2287..2289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud202.t1Gcaud202.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4256_length_2422_cov_7.728443 1810..2289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud202.t1 ID=Gcaud202.t1|Name=Gcaud202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MPWLLLLFQNTLLYNSYQLASIALLERMDVLTHSLANTVKRFSAIAFMAF
MAREQLAVVQMPSLLLNAVGFPMHMLAKHKTSPQARVPRINVSFSIGSAS
PLLLIVILDIGTFNDSELVTPVLDLMPLSIPSNKGRESHISLGIPPDYTR
LLSDTQPSP*
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spliced messenger RNA

>Gcaud202.t1 ID=Gcaud202.t1|Name=Gcaud202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4256_length_2422_cov_7.728443:1810..2289+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTGGCTTCTTCTGTTGTTCCAAAACACGTTGTTGTATAATTCGTA
TCAATTGGCCAGTATCGCTCTGCTGGAACGAATGGATGTGCTCACCCATT
CCTTAGCCAATACAGTCAAACGCTTTTCTGCCATTGCTTTCATGGCATTT
ATGGCTAGAGAACAACTTGCCGTCGTTCAAATGCCCTCGTTACTGCTGAA
TGCTGTTGGTTTTCCAATGCATATGTTGGCCAAGCACAAGACTTCCCCAC
AAGCACGAGTGCCTCGAATCAACGTGAGTTTCAGTATCGGGTCTGCTTCT
CCGCTGCTGCTCATTGTTATACTTGACATTGGAACTTTTAACGACTCTGA
ATTGGTCACACCTGTCCTTGATCTGATGCCTCTTTCCATCCCGAGCAACA
AGGGTCGTGAAAGTCACATTTCGCTTGGCATTCCGCCTGACTATACTCGC
CTACTTTCTGACACGCAACCCTCGCCTTAG
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protein sequence of Gcaud202.t1

>Gcaud202.t1 ID=Gcaud202.t1|Name=Gcaud202.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MPWLLLLFQNTLLYNSYQLASIALLERMDVLTHSLANTVKRFSAIAFMAF
MAREQLAVVQMPSLLLNAVGFPMHMLAKHKTSPQARVPRINVSFSIGSAS
PLLLIVILDIGTFNDSELVTPVLDLMPLSIPSNKGRESHISLGIPPDYTR
LLSDTQPSP*
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mRNA from alignment at NODE_4256_length_2422_cov_7.728443:1810..2289+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud202.t1 ID=Gcaud202.t1|Name=Gcaud202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4256_length_2422_cov_7.728443:1810..2289+ (Gracilaria caudata M_176_S67 male)
ATGCCTTGGCTTCTTCTGTTGTTCCAAAACACGTTGTTGTATAATTCGTA
TCAATTGGCCAGTATCGCTCTGCTGGAACGAATGGATGTGCTCACCCATT
CCTTAGCCAATACAGTCAAACGCTTTTCTGCCATTGCTTTCATGGCATTT
ATGGCTAGAGAACAACTTGCCGTCGTTCAAATGCCCTCGTTACTGCTGAA
TGCTGTTGGTTTTCCAATGCATATGTTGGCCAAGCACAAGACTTCCCCAC
AAGCACGAGTGCCTCGAATCAACGTGAGTTTCAGTATCGGGTCTGCTTCT
CCGCTGCTGCTCATTGTTATACTTGACATTGGAACTTTTAACGACTCTGA
ATTGGTCACACCTGTCCTTGATCTGATGCCTCTTTCCATCCCGAGCAACA
AGGGTCGTGAAAGTCACATTTCGCTTGGCATTCCGCCTGACTATACTCGC
CTACTTTCTGACACGCAACCCTCGCCTTAG
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Coding sequence (CDS) from alignment at NODE_4256_length_2422_cov_7.728443:1810..2289+

>Gcaud202.t1 ID=Gcaud202.t1|Name=Gcaud202.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_4256_length_2422_cov_7.728443:1810..2289+ (Gracilaria caudata M_176_S67 male)
ATGCCTTGGCTTCTTCTGTTGTTCCAAAACACGTTGTTGTATAATTCGTA
TCAATTGGCCAGTATCGCTCTGCTGGAACGAATGGATGTGCTCACCCATT
CCTTAGCCAATACAGTCAAACGCTTTTCTGCCATTGCTTTCATGGCATTT
ATGGCTAGAGAACAACTTGCCGTCGTTCAAATGCCCTCGTTACTGCTGAA
TGCTGTTGGTTTTCCAATGCATATGTTGGCCAAGCACAAGACTTCCCCAC
AAGCACGAGTGCCTCGAATCAACGTGAGTTTCAGTATCGGGTCTGCTTCT
CCGCTGCTGCTCATTGTTATACTTGACATTGGAACTTTTAACGACTCTGA
ATTGGTCACACCTGTCCTTGATCTGATGCCTCTTTCCATCCCGAGCAACA
AGGGTCGTGAAAGTCACATTTCGCTTGGCATTCCGCCTGACTATACTCGC
CTACTTTCTGACACGCAACCCTCGCCTTAG
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