Gcaud1731.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1731.t1
Unique Name	Gcaud1731.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1010_length_15078_cov_4.529993	contig	NODE_1010_length_15078_cov_4.529993:9800..11056 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1731	Gcaud1731	Gracilaria caudata M_176_S67 male	gene	NODE_1010_length_15078_cov_4.529993 9800..11056 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1731.t1.stop1	Gcaud1731.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1010_length_15078_cov_4.529993 9800..9802 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1731.t1.CDS1	Gcaud1731.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1010_length_15078_cov_4.529993 9800..11056 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1731.t1.exon1	Gcaud1731.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1010_length_15078_cov_4.529993 9800..11056 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1731.t1.start1	Gcaud1731.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1010_length_15078_cov_4.529993 11054..11056 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1731.t1	Gcaud1731.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1010_length_15078_cov_4.529993 9800..11056 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056-
coding sequence from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056-

mRNA sequence

>Gcaud1731.t1 ID=Gcaud1731.t1|Name=Gcaud1731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=419bp
MEIASSLRNMNKLLILLFILLISVLNTEASKQVTAPRPTLISGTYGGLGN
QLYYLCENMLLARQGNLTFVPPSISIRHASRDNNTMPLPDVEYDEFLDSR
FLSRIVNVSRTLPRHCSNGVQHVFVGRRHGILAEQVPRFTAAARLLIGQN
SSETEKSRNKRFVRDAKIHRRFLPMKHGANYSFVKEISSLTGSCVFLDGH
SFFRKGEEGNEYLYSFMHYVESAPRVKRLADQWNTDKLCVLHLRYDEHEC
VPDIERMKGMICIRRRLKQGRKGTVMWTGVTSLGNEVIEVMRKTGASSLY
LATSPYVPAESRAQLISHLSKRVKVVPVVPDEIGSMLKNFVEREVAVRAK
LFIGDFASTWSGTLYYKRRTLGRETDWTCSLVGKCDDKAFYAKKGKLEQP
QWFEKNFDVRPTANVFKH*

spliced messenger RNA

>Gcaud1731.t1 ID=Gcaud1731.t1|Name=Gcaud1731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTGCATCCTCGTTGCGTAACATGAACAAGCTTCTCATTCTCTT
GTTCATCTTGTTGATATCAGTATTGAATACGGAAGCATCGAAGCAAGTCA
CTGCCCCCCGCCCCACCCTGATTTCGGGAACCTATGGCGGTTTAGGAAAC
CAGCTCTACTATTTATGTGAAAATATGCTCCTCGCTCGGCAAGGAAACCT
GACATTCGTACCCCCTTCCATTTCTATACGCCACGCATCCCGTGACAATA
ACACCATGCCTCTACCAGATGTTGAATACGATGAGTTTCTGGACAGCCGG
TTCTTAAGTCGTATTGTGAACGTAAGCCGAACTCTTCCAAGGCACTGTAG
CAATGGTGTGCAACACGTTTTTGTCGGACGTCGCCACGGGATTCTGGCGG
AGCAAGTTCCTCGTTTTACAGCAGCAGCTCGCCTGCTTATCGGACAAAAT
TCTAGCGAAACAGAGAAATCGCGCAACAAACGTTTTGTTCGAGATGCAAA
GATTCACAGGCGATTCCTGCCTATGAAACATGGAGCAAACTATTCTTTTG
TCAAAGAAATATCTTCTTTGACAGGTTCTTGTGTGTTCTTAGACGGGCAT
TCCTTCTTCCGTAAGGGAGAAGAAGGTAATGAGTACTTGTATAGTTTCAT
GCATTACGTGGAATCAGCTCCCCGAGTGAAGCGCCTCGCCGACCAATGGA
ACACCGACAAGTTATGTGTTCTCCATTTGCGGTACGATGAACACGAGTGC
GTGCCCGATATAGAGCGGATGAAGGGAATGATTTGCATTCGGAGACGGCT
CAAACAAGGTCGAAAAGGCACTGTGATGTGGACCGGCGTTACTTCGCTTG
GAAATGAGGTGATTGAAGTGATGAGAAAGACAGGGGCGAGTTCATTGTAT
CTTGCAACATCTCCATATGTTCCTGCGGAATCTAGAGCACAGCTGATATC
TCATCTGTCAAAAAGAGTGAAAGTGGTGCCAGTGGTGCCAGACGAAATCG
GGTCAATGCTAAAGAATTTTGTAGAAAGAGAGGTTGCAGTCAGAGCGAAA
TTGTTCATTGGAGACTTTGCAAGCACATGGTCTGGTACCCTGTACTATAA
ACGAAGAACACTAGGTCGAGAAACCGATTGGACATGTTCGCTAGTGGGAA
AGTGCGACGACAAAGCTTTCTACGCGAAGAAAGGAAAACTTGAGCAACCA
CAATGGTTCGAGAAGAATTTCGACGTGAGGCCGACTGCAAATGTTTTTAA
GCACTGA

protein sequence of Gcaud1731.t1

>Gcaud1731.t1 ID=Gcaud1731.t1|Name=Gcaud1731.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=419bp
MEIASSLRNMNKLLILLFILLISVLNTEASKQVTAPRPTLISGTYGGLGN
QLYYLCENMLLARQGNLTFVPPSISIRHASRDNNTMPLPDVEYDEFLDSR
FLSRIVNVSRTLPRHCSNGVQHVFVGRRHGILAEQVPRFTAAARLLIGQN
SSETEKSRNKRFVRDAKIHRRFLPMKHGANYSFVKEISSLTGSCVFLDGH
SFFRKGEEGNEYLYSFMHYVESAPRVKRLADQWNTDKLCVLHLRYDEHEC
VPDIERMKGMICIRRRLKQGRKGTVMWTGVTSLGNEVIEVMRKTGASSLY
LATSPYVPAESRAQLISHLSKRVKVVPVVPDEIGSMLKNFVEREVAVRAK
LFIGDFASTWSGTLYYKRRTLGRETDWTCSLVGKCDDKAFYAKKGKLEQP
QWFEKNFDVRPTANVFKH*

mRNA from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1731.t1 ID=Gcaud1731.t1|Name=Gcaud1731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056- (Gracilaria caudata M_176_S67 male)
ATGGAAATTGCATCCTCGTTGCGTAACATGAACAAGCTTCTCATTCTCTT
GTTCATCTTGTTGATATCAGTATTGAATACGGAAGCATCGAAGCAAGTCA
CTGCCCCCCGCCCCACCCTGATTTCGGGAACCTATGGCGGTTTAGGAAAC
CAGCTCTACTATTTATGTGAAAATATGCTCCTCGCTCGGCAAGGAAACCT
GACATTCGTACCCCCTTCCATTTCTATACGCCACGCATCCCGTGACAATA
ACACCATGCCTCTACCAGATGTTGAATACGATGAGTTTCTGGACAGCCGG
TTCTTAAGTCGTATTGTGAACGTAAGCCGAACTCTTCCAAGGCACTGTAG
CAATGGTGTGCAACACGTTTTTGTCGGACGTCGCCACGGGATTCTGGCGG
AGCAAGTTCCTCGTTTTACAGCAGCAGCTCGCCTGCTTATCGGACAAAAT
TCTAGCGAAACAGAGAAATCGCGCAACAAACGTTTTGTTCGAGATGCAAA
GATTCACAGGCGATTCCTGCCTATGAAACATGGAGCAAACTATTCTTTTG
TCAAAGAAATATCTTCTTTGACAGGTTCTTGTGTGTTCTTAGACGGGCAT
TCCTTCTTCCGTAAGGGAGAAGAAGGTAATGAGTACTTGTATAGTTTCAT
GCATTACGTGGAATCAGCTCCCCGAGTGAAGCGCCTCGCCGACCAATGGA
ACACCGACAAGTTATGTGTTCTCCATTTGCGGTACGATGAACACGAGTGC
GTGCCCGATATAGAGCGGATGAAGGGAATGATTTGCATTCGGAGACGGCT
CAAACAAGGTCGAAAAGGCACTGTGATGTGGACCGGCGTTACTTCGCTTG
GAAATGAGGTGATTGAAGTGATGAGAAAGACAGGGGCGAGTTCATTGTAT
CTTGCAACATCTCCATATGTTCCTGCGGAATCTAGAGCACAGCTGATATC
TCATCTGTCAAAAAGAGTGAAAGTGGTGCCAGTGGTGCCAGACGAAATCG
GGTCAATGCTAAAGAATTTTGTAGAAAGAGAGGTTGCAGTCAGAGCGAAA
TTGTTCATTGGAGACTTTGCAAGCACATGGTCTGGTACCCTGTACTATAA
ACGAAGAACACTAGGTCGAGAAACCGATTGGACATGTTCGCTAGTGGGAA
AGTGCGACGACAAAGCTTTCTACGCGAAGAAAGGAAAACTTGAGCAACCA
CAATGGTTCGAGAAGAATTTCGACGTGAGGCCGACTGCAAATGTTTTTAA
GCACTGA

Coding sequence (CDS) from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056-

>Gcaud1731.t1 ID=Gcaud1731.t1|Name=Gcaud1731.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1257bp|location=Sequence derived from alignment at NODE_1010_length_15078_cov_4.529993:9800..11056- (Gracilaria caudata M_176_S67 male)
ATGGAAATTGCATCCTCGTTGCGTAACATGAACAAGCTTCTCATTCTCTT
GTTCATCTTGTTGATATCAGTATTGAATACGGAAGCATCGAAGCAAGTCA
CTGCCCCCCGCCCCACCCTGATTTCGGGAACCTATGGCGGTTTAGGAAAC
CAGCTCTACTATTTATGTGAAAATATGCTCCTCGCTCGGCAAGGAAACCT
GACATTCGTACCCCCTTCCATTTCTATACGCCACGCATCCCGTGACAATA
ACACCATGCCTCTACCAGATGTTGAATACGATGAGTTTCTGGACAGCCGG
TTCTTAAGTCGTATTGTGAACGTAAGCCGAACTCTTCCAAGGCACTGTAG
CAATGGTGTGCAACACGTTTTTGTCGGACGTCGCCACGGGATTCTGGCGG
AGCAAGTTCCTCGTTTTACAGCAGCAGCTCGCCTGCTTATCGGACAAAAT
TCTAGCGAAACAGAGAAATCGCGCAACAAACGTTTTGTTCGAGATGCAAA
GATTCACAGGCGATTCCTGCCTATGAAACATGGAGCAAACTATTCTTTTG
TCAAAGAAATATCTTCTTTGACAGGTTCTTGTGTGTTCTTAGACGGGCAT
TCCTTCTTCCGTAAGGGAGAAGAAGGTAATGAGTACTTGTATAGTTTCAT
GCATTACGTGGAATCAGCTCCCCGAGTGAAGCGCCTCGCCGACCAATGGA
ACACCGACAAGTTATGTGTTCTCCATTTGCGGTACGATGAACACGAGTGC
GTGCCCGATATAGAGCGGATGAAGGGAATGATTTGCATTCGGAGACGGCT
CAAACAAGGTCGAAAAGGCACTGTGATGTGGACCGGCGTTACTTCGCTTG
GAAATGAGGTGATTGAAGTGATGAGAAAGACAGGGGCGAGTTCATTGTAT
CTTGCAACATCTCCATATGTTCCTGCGGAATCTAGAGCACAGCTGATATC
TCATCTGTCAAAAAGAGTGAAAGTGGTGCCAGTGGTGCCAGACGAAATCG
GGTCAATGCTAAAGAATTTTGTAGAAAGAGAGGTTGCAGTCAGAGCGAAA
TTGTTCATTGGAGACTTTGCAAGCACATGGTCTGGTACCCTGTACTATAA
ACGAAGAACACTAGGTCGAGAAACCGATTGGACATGTTCGCTAGTGGGAA
AGTGCGACGACAAAGCTTTCTACGCGAAGAAAGGAAAACTTGAGCAACCA
CAATGGTTCGAGAAGAATTTCGACGTGAGGCCGACTGCAAATGTTTTTAA
GCACTGA