Gcaud239.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud239.t1
Unique NameGcaud239.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length208
Homology
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BLAST of Gcaud239.t1 vs. uniprot
Match: A0A2V3IPL0_9FLOR (E3 ubiquitin-protein ligase UPL1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL0_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 2.260e-6
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 0 
Query:    2 LIDRSSLSEPMGLLMVDVDDDVIFPLPEENDDEDIGSYKDLFAQQNRVRNDIQTSGALQTSEDNDKDENKNEKDAEEEKITTSRFLVPRLKESELIVLTRTDIEREYLD 110
            L+++S +S+P+ LLM D+D+D +FP+  E D+E++ S+++L  + +R +  +          D          + EEE +   ++ VPRLKESELI LT+  +    +D
Sbjct:  960 LLEQSGISDPVRLLMFDIDEDEVFPMLVEEDEEEVDSFEELIMR-SRGQGRLPVPSGRDNPSDXXXXXXXXXXNKEEEVLIPPQYRVPRLKESELIALTKVLLRSSCVD 1067
The following BLAST results are available for this feature:
BLAST of Gcaud239.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPL0_9FLOR2.260e-632.11E3 ubiquitin-protein ligase UPL1 n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188
NoneNo IPR availableCOILSCoilCoilcoord: 59..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_417_length_26175_cov_4.521967contigNODE_417_length_26175_cov_4.521967:10492..11247 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud239.t1Gcaud239.t1Gracilaria caudata M_176_S67 malemRNANODE_417_length_26175_cov_4.521967 10492..11247 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MLIDRSSLSEPMGLLMVDVDDDVIFPLPEENDDEDIGSYKDLFAQQNRVR
NDIQTSGALQTSEDNDKDENKNEKDAEEEKITTSRFLVPRLKESELIVLT
RTDIEREYLDTVAELQAGAKCGDATQKKHILSAFSLGSNANDVTLLRVVK
SLSDFLLKHEVLKPEPKKENEEQEKDTLEINATDAEIGEYRRSMSDGLSW
FWAALDK*
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